-
1
-
-
84864832228
-
Empirical validation of pooled whole genome population re-sequencing in Drosophila melanogaster
-
3406057 1:CAS:528:DC%2BC38XhtFeisr7N 22848651
-
Zhu Y, Bergland AO, González J, Petrov DA. Empirical validation of pooled whole genome population re-sequencing in Drosophila melanogaster. PLoS One. 2012;7:e41901.
-
(2012)
PLoS One
, vol.7
, pp. 41901
-
-
Zhu, Y.1
Bergland, A.O.2
González, J.3
Petrov, D.A.4
-
2
-
-
79953735688
-
Population-based resequencing of experimentally evolved populations reveals the genetic basis of body size variation in Drosophila melanogaster
-
3060078 1:CAS:528:DC%2BC3MXktVWgsrw%3D 21437274
-
Turner TL, Stewart AD, Fields AT, Rice WR, Tarone AM. Population-based resequencing of experimentally evolved populations reveals the genetic basis of body size variation in Drosophila melanogaster. PLoS Genet. 2011;7:e1001336.
-
(2011)
PLoS Genet
, vol.7
, pp. 1001336
-
-
Turner, T.L.1
Stewart, A.D.2
Fields, A.T.3
Rice, W.R.4
Tarone, A.M.5
-
3
-
-
84870478438
-
A high resolution genome-wide scan for significant selective sweeps: An application to pooled sequencing data in laying chickens
-
3510216 1:CAS:528:DC%2BC38XhvVyju7%2FM 23209582
-
Qanbari S, Strom TM, Haberer G, Weigend S, Gheyas AA, Turner F, et al. A high resolution genome-wide scan for significant selective sweeps: An application to pooled sequencing data in laying chickens. PLoS One. 2012;7:e49525.
-
(2012)
PLoS One
, vol.7
, pp. 49525
-
-
Qanbari, S.1
Strom, T.M.2
Haberer, G.3
Weigend, S.4
Gheyas, A.A.5
Turner, F.6
-
4
-
-
84891643084
-
The genomic signal of partial sweeps in Mimulus guttatus
-
1:CAS:528:DC%2BC2cXit1SlsLk%3D
-
Kelly JK, Koseva B, Mojica JP. The genomic signal of partial sweeps in Mimulus guttatus. Genet Biol Evol. 2013;5:1457-69.
-
(2013)
Genet Biol Evol
, vol.5
, pp. 1457-1469
-
-
Kelly, J.K.1
Koseva, B.2
Mojica, J.P.3
-
5
-
-
84901296551
-
A genome-wide scan for evidence of selection in a maize population under long-term artificial selection for ear number
-
3948809 1:CAS:528:DC%2BC2cXhtl2rs7bJ 24381334
-
Beissinger TM, Hirsch CN, Vaillancourt B, Deshpande S, Barry K, Buell CR, et al. A genome-wide scan for evidence of selection in a maize population under long-term artificial selection for ear number. Genetics. 2014;196:829-40.
-
(2014)
Genetics
, vol.196
, pp. 829-840
-
-
Beissinger, T.M.1
Hirsch, C.N.2
Vaillancourt, B.3
Deshpande, S.4
Barry, K.5
Buell, C.R.6
-
6
-
-
0016220238
-
The hitch-hiking effect of a favourable gene
-
Maynard Smith J, Haigh J. The hitch-hiking effect of a favourable gene. Genet Res. 1974;23:23-35.
-
(1974)
Genet Res
, vol.23
, pp. 23-35
-
-
Maynard Smith, J.1
Haigh, J.2
-
7
-
-
84966152902
-
The spread of a gene in natural conditions in a colony of the moth Panaxia dominula L
-
Fisher RA, Ford EB. The spread of a gene in natural conditions in a colony of the moth Panaxia dominula L. Heredity. 1947;1:143-74.
-
(1947)
Heredity
, vol.1
, pp. 143-174
-
-
Fisher, R.A.1
Ford, E.B.2
-
9
-
-
84880023132
-
Exploring signatures of positive selection in pigmentation candidate genes in populations of East Asian ancestry
-
3727976 23848512
-
Hider JL, Gittelman RM, Shah T, Edwards M, Rosenbloom A, Akey JM, et al. Exploring signatures of positive selection in pigmentation candidate genes in populations of East Asian ancestry. BMC Evol Biol. 2013;13:150.
-
(2013)
BMC Evol Biol
, vol.13
, pp. 150
-
-
Hider, J.L.1
Gittelman, R.M.2
Shah, T.3
Edwards, M.4
Rosenbloom, A.5
Akey, J.M.6
-
10
-
-
77957346489
-
Genome-wide analysis of a long-term evolution experiment with Drosophila
-
1:CAS:528:DC%2BC3cXhtFGntL%2FN 20844486
-
Burke MK, Dunham JP, Shahrestani P, Thornton KR, Rose MR, Long AD. Genome-wide analysis of a long-term evolution experiment with Drosophila. Nature. 2010;467:587-90.
-
(2010)
Nature
, vol.467
, pp. 587-590
-
-
Burke, M.K.1
Dunham, J.P.2
Shahrestani, P.3
Thornton, K.R.4
Rose, M.R.5
Long, A.D.6
-
11
-
-
77950080740
-
Whole-genome resequencing reveals loci under selection during chicken domestication
-
1:CAS:528:DC%2BC3cXivFKnsb4%3D 20220755
-
Rubin CJ, Zody MC, Eriksson J, Meadows JRS, Sherwood E, Webster MT, et al. Whole-genome resequencing reveals loci under selection during chicken domestication. Nature. 2010;464:587-91.
-
(2010)
Nature
, vol.464
, pp. 587-591
-
-
Rubin, C.J.1
Zody, M.C.2
Eriksson, J.3
Meadows, J.R.S.4
Sherwood, E.5
Webster, M.T.6
-
12
-
-
65149103048
-
Construction genomic maps of positive selection in humans: Where do we go from here?
-
3647533 1:CAS:528:DC%2BD1MXlsFykur4%3D 19411596
-
Akey JM. Construction genomic maps of positive selection in humans: Where do we go from here? Genome Res. 2009;19:711-22.
-
(2009)
Genome Res
, vol.19
, pp. 711-722
-
-
Akey, J.M.1
-
13
-
-
37849028271
-
Identification and analysis of genomic regions with large between-population differentiation in humans
-
18184145
-
Myles S, Tang K, Somel M, Green RE, Kelso J, Stoneking M. Identification and analysis of genomic regions with large between-population differentiation in humans. Ann Hum Genet. 2008;72:99-110.
-
(2008)
Ann Hum Genet
, vol.72
, pp. 99-110
-
-
Myles, S.1
Tang, K.2
Somel, M.3
Green, R.E.4
Kelso, J.5
Stoneking, M.6
-
15
-
-
0021566877
-
Estimating F-statistics for the analysis of population structure
-
Weir BS, Cockerham CC. Estimating F-statistics for the analysis of population structure. Evolution. 1984;38:1358-70.
-
(1984)
Evolution
, vol.38
, pp. 1358-1370
-
-
Weir, B.S.1
Cockerham, C.C.2
-
16
-
-
15544376156
-
Integration of association statistics over genomic regions using Bayesian adaptive regression splines
-
1:CAS:528:DC%2BD2cXhsVymt7g%3D 15601530
-
Zhang Z, Roeder K, Wallstrom G, Devlin B. Integration of association statistics over genomic regions using Bayesian adaptive regression splines. Hum Genomics. 2003;1:20-9.
-
(2003)
Hum Genomics
, vol.1
, pp. 20-29
-
-
Zhang, Z.1
Roeder, K.2
Wallstrom, G.3
Devlin, B.4
-
17
-
-
84892436120
-
Use of locally weighted scatterplot smoothing (LOWESS) regression to study selection signatures in Piedmontese and Italian Brown cattle breeds
-
23889699
-
Pintus E, Sorbolini S, Albera A, Gaspa G, Dimauro C, Steri R, et al. Use of locally weighted scatterplot smoothing (LOWESS) regression to study selection signatures in Piedmontese and Italian Brown cattle breeds. Anim Genet. 2013;45:1-11.
-
(2013)
Anim Genet
, vol.45
, pp. 1-11
-
-
Pintus, E.1
Sorbolini, S.2
Albera, A.3
Gaspa, G.4
Dimauro, C.5
Steri, R.6
-
18
-
-
0001995852
-
Some aspects of the spline smoothing approach to non-parametric regression curve fitting
-
Silverman BW. Some aspects of the spline smoothing approach to non-parametric regression curve fitting. J R Stat Soc Series B Stat Methodol. 1985;47:1-52.
-
(1985)
J R Stat Soc Series B Stat Methodol
, vol.47
, pp. 1-52
-
-
Silverman, B.W.1
-
19
-
-
34250516079
-
Smoothing by spline functions
-
Reinsch CH. Smoothing by spline functions. Numer Math. 1967;10:177-83.
-
(1967)
Numer Math
, vol.10
, pp. 177-183
-
-
Reinsch, C.H.1
-
20
-
-
84908418476
-
R Core Team: A language and environment for statistical computing
-
R Core Team: A language and environment for statistical computing. Vienna: R Foundation for Statistical Computing; 2013.
-
(2013)
Vienna: R Foundation for Statistical Computing
-
-
-
21
-
-
84927764637
-
Pspline: Penalized smoothing splines
-
Ramsey J, Ripley B. pspline: penalized smoothing splines. 2007. R package version 1.0-16. http://CRAN.R-project.org/package=pspline. Accessed Feb 2014.
-
(2007)
R Package Version 1.0-16
-
-
Ramsey, J.1
Ripley, B.2
-
22
-
-
34250263445
-
Smoothing noisy data with spline functions
-
Craven P, Wahba G. Smoothing noisy data with spline functions. Numer Math. 1978;31:377-403.
-
(1978)
Numer Math
, vol.31
, pp. 377-403
-
-
Craven, P.1
Wahba, G.2
-
23
-
-
61449259063
-
QMSim: A large-scale genome simulator for livestock
-
1:CAS:528:DC%2BD1MXisFeks7Y%3D 19176551
-
Sargolzaei M, Schenkel FS. QMSim: a large-scale genome simulator for livestock. Bioinformatics. 2009;25:680-1.
-
(2009)
Bioinformatics
, vol.25
, pp. 680-681
-
-
Sargolzaei, M.1
Schenkel, F.S.2
-
24
-
-
79953706639
-
Genome-wide footprints of pig domestication and selection revealed through massive parallel sequencing of pooled DNA
-
3070695 1:CAS:528:DC%2BC3MXkvVers7k%3D 21483733
-
Amaral AJ, Ferretti L, Megens HJ, Crooijmans RPMA, Nie H, Ramos-Onsins SE, et al. Genome-wide footprints of pig domestication and selection revealed through massive parallel sequencing of pooled DNA. PLoS One. 2011;6:e14782.
-
(2011)
PLoS One
, vol.6
, pp. 14782
-
-
Amaral, A.J.1
Ferretti, L.2
Megens, H.J.3
Crooijmans, R.4
Nie, H.5
Ramos-Onsins, S.E.6
-
25
-
-
75749154475
-
Tracking footprints of artificial selection in the dog genome
-
2824266 1:CAS:528:DC%2BC3cXhtF2jsb0%3D 20080661
-
Akey JM, Ruhe AL, Akey DT, Wong AK, Connelly CF, Madeoy J, et al. Tracking footprints of artificial selection in the dog genome. Proc Natl Acad Sci. 2010;107:1160-5.
-
(2010)
Proc Natl Acad Sci
, vol.107
, pp. 1160-1165
-
-
Akey, J.M.1
Ruhe, A.L.2
Akey, D.T.3
Wong, A.K.4
Connelly, C.F.5
Madeoy, J.6
-
26
-
-
0024313579
-
Statistical method for testing the neutral mutation hypothesis by DNA polymorphism
-
1:CAS:528:DyaK3cXhslentA%3D%3D 2513255
-
Tajima F. Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics. 1989;123:585-95.
-
(1989)
Genetics
, vol.123
, pp. 585-595
-
-
Tajima, F.1
-
27
-
-
0037167852
-
Detecting recent positive selection in the human genome from haplotype structure
-
1:CAS:528:DC%2BD38XovF2itbc%3D 12397357
-
Sabeti PC, Reich DE, Higgins JM, Levine HZP, Richter DJ, Schaffner SF, et al. Detecting recent positive selection in the human genome from haplotype structure. Nature. 2002;419:832-7.
-
(2002)
Nature
, vol.419
, pp. 832-837
-
-
Sabeti, P.C.1
Reich, D.E.2
Higgins, J.M.3
Levine, H.Z.P.4
Richter, D.J.5
Schaffner, S.F.6
-
28
-
-
84869059015
-
LDx: Estimation of linkage disequilibrium from high-throughput resequencing data
-
3494690 1:CAS:528:DC%2BC38XhslCqu7nJ 23152785
-
Feder AF, Petrov DA, Bergland AO. LDx: Estimation of linkage disequilibrium from high-throughput resequencing data. PLoS One. 2012;7:e48588.
-
(2012)
PLoS One
, vol.7
, pp. 48588
-
-
Feder, A.F.1
Petrov, D.A.2
Bergland, A.O.3
|