메뉴 건너뛰기




Volumn 31, Issue 8, 2015, Pages 1169-1175

Andi: Fast and accurate estimation of evolutionary distances between closely related genomes

Author keywords

[No Author keywords available]

Indexed keywords

ESCHERICHIA; STREPTOCOCCUS PNEUMONIAE;

EID: 84927731921     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btu815     Document Type: Article
Times cited : (80)

References (25)
  • 1
    • 0025183708 scopus 로고
    • Basic local alignment search tool
    • Altschul, S. F. et al. (1990) Basic local alignment search tool. J. Mol. Biol., 215, 403-410.
    • (1990) J. Mol. Biol. , vol.215 , pp. 403-410
    • Altschul, S.F.1
  • 2
    • 79551599525 scopus 로고    scopus 로고
    • Mugsy: Fast multiple alignment of closely related whole genomes
    • Angiuoli, S. V. and Salzberg, S. L. (2011) Mugsy: fast multiple alignment of closely related whole genomes. Bioinformatics, 27, 334-342.
    • (2011) Bioinformatics , vol.27 , pp. 334-342
    • Angiuoli, S.V.1    Salzberg, S.L.2
  • 3
    • 84899548242 scopus 로고    scopus 로고
    • Automated reconstruction of whole-genome phylogenies from short-sequence reads
    • Bertels, F. et al. (2014) Automated reconstruction of whole-genome phylogenies from short-sequence reads. Mol. Biol. Evol., 31, 1077-1088
    • (2014) Mol. Biol. Evol. , vol.31 , pp. 1077-1088
    • Bertels, F.1
  • 4
    • 84895858474 scopus 로고    scopus 로고
    • Dense genomic sampling identifies highways of pneumococcal recombination
    • Chewapreecha, C. et al. (2014) Dense genomic sampling identifies highways of pneumococcal recombination. Nat. Genet., 46, 305-309.
    • (2014) Nat. Genet. , vol.46 , pp. 305-309
    • Chewapreecha, C.1
  • 5
    • 84865047945 scopus 로고    scopus 로고
    • Detecting phylogenetic signals in eukaryotic whole genome sequences
    • Cohen, E. and Chor, B. (2012) Detecting phylogenetic signals in eukaryotic whole genome sequences. J. Comput. Biol., 19, 945-956.
    • (2012) J. Comput. Biol. , vol.19 , pp. 945-956
    • Cohen, E.1    Chor, B.2
  • 6
    • 3543051830 scopus 로고    scopus 로고
    • Mauve: Multiple alignment of conserved genomic sequence with rearrangement
    • Darling, A. C. E. et al. (2004) Mauve: multiple alignment of conserved genomic sequence with rearrangement. Genome Res., 14, 1394-1403.
    • (2004) Genome Res. , vol.14 , pp. 1394-1403
    • Darling, A.C.E.1
  • 7
    • 75849146491 scopus 로고    scopus 로고
    • Efficient estimation of pairwise distances between genomes
    • Domazet-Loso, M. and Haubold, B. (2009) Efficient estimation of pairwise distances between genomes. Bioinformatics, 25, 3221-3227.
    • (2009) Bioinformatics , vol.25 , pp. 3221-3227
    • Domazet-Loso, M.1    Haubold, B.2
  • 10
    • 38049088202 scopus 로고    scopus 로고
    • A new succinct representation of rmqinformation and improvements in the enhanced suffix array
    • Fischer, J. and Heun, V. (2007) A new succinct representation of rmqinformation and improvements in the enhanced suffix array. Lect. Notes Comput. Sc., 4614, 459-470.
    • (2007) Lect. Notes Comput. Sc. , vol.4614 , pp. 459-470
    • Fischer, J.1    Heun, V.2
  • 11
    • 84900808883 scopus 로고    scopus 로고
    • Alignment-free phylogenetics and population genetics
    • Haubold, B. (2014) Alignment-free phylogenetics and population genetics. Brief. Bioinform., 15, 407-418.
    • (2014) Brief. Bioinform. , vol.15 , pp. 407-418
    • Haubold, B.1
  • 12
    • 70349789710 scopus 로고    scopus 로고
    • Estimating mutation distances from unaligned genomes
    • Haubold, B. et al. (2009) Estimating mutation distances from unaligned genomes. J. Comput. Biol., 16, 1487-1500.
    • (2009) J. Comput. Biol. , vol.16 , pp. 1487-1500
    • Haubold, B.1
  • 13
    • 84900374030 scopus 로고    scopus 로고
    • An alignment-free test for recombination
    • Haubold, B. et al. (2013) An alignment-free test for recombination. Bioinformatics, 29, 3121-3127.
    • (2013) Bioinformatics , vol.29 , pp. 3121-3127
    • Haubold, B.1
  • 14
    • 33751381461 scopus 로고    scopus 로고
    • TimeTree: A public knowledge-base of divergence times among organisms
    • Hedges, S. B. et al. (2006) TimeTree: a public knowledge-base of divergence times among organisms. Bioinformatics, 22, 2971-2972.
    • (2006) Bioinformatics , vol.22 , pp. 2971-2972
    • Hedges, S.B.1
  • 15
    • 0000732090 scopus 로고
    • Evolution of protein molecules
    • H. N. Munro (ed. ) Academic Press, NY
    • Jukes, T. H. and Cantor, C. R. (1969) Evolution of protein molecules. In: H. N., Munro (ed. ) Mammalian Protein Metabolism, vol. 3, Academic Press, NY, pp. 21-132.
    • (1969) Mammalian Protein Metabolism , vol.3 , pp. 21-132
    • Jukes, T.H.1    Cantor, C.R.2
  • 16
    • 2942538300 scopus 로고    scopus 로고
    • Versatile and open software for comparing large genomes
    • Kurtz, S. et al. (2004) Versatile and open software for comparing large genomes. Genome Biol., 5, R12.
    • (2004) Genome Biol. , vol.5 , pp. R12
    • Kurtz, S.1
  • 17
    • 84903977588 scopus 로고    scopus 로고
    • Kmacs: The k-mismatch average common substring approach to alignment-free sequence comparison
    • Leimeister, C.-A. and Morgenstern, B. (2014) kmacs: the k-mismatch average common substring approach to alignment-free sequence comparison. Bioinformatics, 30, 2000-2008.
    • (2014) Bioinformatics , vol.30 , pp. 2000-2008
    • Leimeister, C.-A.1    Morgenstern, B.2
  • 20
    • 0029853148 scopus 로고    scopus 로고
    • WWW-Query: An on-line retrieval system for biological sequence banks
    • Perrière, G. and Gouy, M. (1996)WWW-Query: an on-line retrieval system for biological sequence banks. Biochimie, 78, 364-369.
    • (1996) Biochimie , vol.78 , pp. 364-369
    • Perrière, G.1
  • 21
    • 84898814306 scopus 로고    scopus 로고
    • Global dissemination of a multidrug resistant Escherichia coli clone
    • USA
    • Petty, N. K. et al. (2014) Global dissemination of a multidrug resistant Escherichia coli clone. In Proceedings of the National Academy of Sciences, 111, 5694-5699, USA.
    • (2014) Proceedings of the National Academy of Sciences , vol.111 , pp. 5694-5699
    • Petty, N.K.1
  • 22
    • 0019424782 scopus 로고
    • Comparison of phylogenetic trees
    • Robinson, D. F. and Foulds, L. R. (1981) Comparison of phylogenetic trees. Math. Biosci., 53, 514-525.
    • (1981) Math. Biosci. , vol.53 , pp. 514-525
    • Robinson, D.F.1    Foulds, L.R.2
  • 23
    • 33646005790 scopus 로고    scopus 로고
    • The average common substring approach to phylogenomic reconstruction
    • Ulitsky, I. et al. (2006) The average common substring approach to phylogenomic reconstruction. J. Comput. Biol., 13, 336-350.
    • (2006) J. Comput. Biol. , vol.13 , pp. 336-350
    • Ulitsky, I.1
  • 24
    • 84884945088 scopus 로고    scopus 로고
    • Fixed-parameter algorithms for maximum agreement forests
    • Whidden, C. et al. (2013) Fixed-parameter algorithms for maximum agreement forests. SIAM J. Comput., 42, 1421-1466.
    • (2013) SIAM J. Comput. , vol.42 , pp. 1421-1466
    • Whidden, C.1
  • 25
    • 84876526790 scopus 로고    scopus 로고
    • Co-phylog: An assembly-free phylogenomic approach for closely related organisms
    • Yi, H. and Jin, L. (2013) Co-phylog: an assembly-free phylogenomic approach for closely related organisms. Nucleic Acids Res., 41, e75.
    • (2013) Nucleic Acids Res. , vol.41 , pp. e75
    • Yi, H.1    Jin, L.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.