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Volumn 56, Issue , 2015, Pages 71-83

Gene expression patterns combined with network analysis identify hub genes associated with bladder cancer

Author keywords

Bioprocess; Bladder cancer; Co expression network; Hub genes

Indexed keywords

CELL ADHESION; COMPLEX NETWORKS; COMPLEXATION; DIAGNOSIS; DISEASES; GENES; MATRIX ALGEBRA; PROTEINS; TRANSCRIPTION;

EID: 84927728616     PISSN: 14769271     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.compbiolchem.2015.04.001     Document Type: Article
Times cited : (43)

References (37)
  • 1
    • 70449341671 scopus 로고    scopus 로고
    • The bladder extracellular matrix. Part I: Architecture, development and disease
    • K.J. Aitken, and D.J. Bägli The bladder extracellular matrix. Part I: architecture, development and disease Nat. Rev. Urol. 6 11 2009 596 611
    • (2009) Nat. Rev. Urol. , vol.6 , Issue.11 , pp. 596-611
    • Aitken, K.J.1    Bägli, D.J.2
  • 2
    • 2942552459 scopus 로고    scopus 로고
    • An automated method for finding molecular complexes in large protein interaction networks
    • G.D. Bader, and C.W. Hogue An automated method for finding molecular complexes in large protein interaction networks BMC Bioinformatics 4 1 2003 2
    • (2003) BMC Bioinformatics , vol.4 , Issue.1 , pp. 2
    • Bader, G.D.1    Hogue, C.W.2
  • 3
    • 0001677717 scopus 로고
    • Controlling the false discovery rate: A practical and powerful approach to multiple testing
    • Y. Benjamini, and Y. Hochberg Controlling the false discovery rate: a practical and powerful approach to multiple testing J. R. Stat. Soc. Ser. B (Methodological) 1995 289 300
    • (1995) J. R. Stat. Soc. Ser. B (Methodological) , pp. 289-300
    • Benjamini, Y.1    Hochberg, Y.2
  • 4
    • 26444453688 scopus 로고    scopus 로고
    • Bladder cancer stage and outcome by array-based comparative genomic hybridization
    • E. Blaveri, and J.L. Brewer Bladder cancer stage and outcome by array-based comparative genomic hybridization Clin. Cancer Res. 11 19 2005 7012 7022
    • (2005) Clin. Cancer Res. , vol.11 , Issue.19 , pp. 7012-7022
    • Blaveri, E.1    Brewer, J.L.2
  • 5
    • 10144222646 scopus 로고    scopus 로고
    • Loss of adipocyte-type fatty acid binding protein and other protein biomarkers is associated with progression of human bladder transitional cell carcinomas
    • J.E. Celis, and M. ∅stergaard Loss of adipocyte-type fatty acid binding protein and other protein biomarkers is associated with progression of human bladder transitional cell carcinomas Cancer Res. 56 20 1996 4782 4790
    • (1996) Cancer Res. , vol.56 , Issue.20 , pp. 4782-4790
    • Celis, J.E.1    Ostergaard, M.2
  • 6
    • 79955673221 scopus 로고    scopus 로고
    • Cyclin-dependent kinase-associated protein Cks2 is associated with bladder cancer progression
    • R. Chen, and C. Feng Cyclin-dependent kinase-associated protein Cks2 is associated with bladder cancer progression J. Int. Med. Res. 39 2 2011 533 540
    • (2011) J. Int. Med. Res. , vol.39 , Issue.2 , pp. 533-540
    • Chen, R.1    Feng, C.2
  • 7
    • 79952993121 scopus 로고    scopus 로고
    • Bladder cancer: Translating molecular genetic insights into clinical practice
    • L. Cheng, and S. Zhang Bladder cancer: translating molecular genetic insights into clinical practice Hum. Pathol. 42 4 2011 455 481
    • (2011) Hum. Pathol. , vol.42 , Issue.4 , pp. 455-481
    • Cheng, L.1    Zhang, S.2
  • 8
    • 2542565666 scopus 로고    scopus 로고
    • Gene expression in the urinary bladder: A common carcinoma in situ gene expression signature exists disregarding histopathological classification
    • L. Dyrskjøt, and M. Kruhøffer Gene expression in the urinary bladder: a common carcinoma in situ gene expression signature exists disregarding histopathological classification Cancer Research 64 11 2004 4040 4048
    • (2004) Cancer Research , vol.64 , Issue.11 , pp. 4040-4048
    • Dyrskjøt, L.1    Kruhøffer, M.2
  • 9
    • 13444282534 scopus 로고    scopus 로고
    • Outcome signature genes in breast cancer: Is there a unique set?
    • L. Ein-Dor, and I. Kela Outcome signature genes in breast cancer: is there a unique set? Bioinformatics 21 2 2005 171 178
    • (2005) Bioinformatics , vol.21 , Issue.2 , pp. 171-178
    • Ein-Dor, L.1    Kela, I.2
  • 10
    • 84864371067 scopus 로고    scopus 로고
    • A new approach for boundary recognition in geometric sensor networks
    • arXiv:preprintcs/0508006
    • Fekete, S.P., Kaufmann, M., et al., 2005. A new approach for boundary recognition in geometric sensor networks, Canadian Conference on Computational Geometry, arXiv:preprintcs/0508006.
    • (2005) Canadian Conference on Computational Geometry
    • Fekete, S.P.1    Kaufmann, M.2
  • 11
    • 32844467533 scopus 로고    scopus 로고
    • Expression Analysis Systematic Explorer (EASE) analysis reveals differential gene expression in permanent and transient focal stroke rat models
    • G. Ford, and Z. Xu Expression Analysis Systematic Explorer (EASE) analysis reveals differential gene expression in permanent and transient focal stroke rat models Brain Res. 1071 1 2006 226 236
    • (2006) Brain Res. , vol.1071 , Issue.1 , pp. 226-236
    • Ford, G.1    Xu, Z.2
  • 12
    • 0009090117 scopus 로고
    • Centered graphs and the structure of ego networks
    • L.C. Freeman Centered graphs and the structure of ego networks Math. Soc. Sci. 3 3 1982 291 304
    • (1982) Math. Soc. Sci. , vol.3 , Issue.3 , pp. 291-304
    • Freeman, L.C.1
  • 13
    • 84872724548 scopus 로고    scopus 로고
    • Multicenter validation of cyclin D1, MCM7, TRIM29, and UBE2C as prognostic protein markers in non-muscle-invasive bladder cancer
    • N. Fristrup, and K. Birkenkamp-Demtröder Multicenter validation of cyclin D1, MCM7, TRIM29, and UBE2C as prognostic protein markers in non-muscle-invasive bladder cancer Am. J. Pathol. 182 2 2013 339 349
    • (2013) Am. J. Pathol. , vol.182 , Issue.2 , pp. 339-349
    • Fristrup, N.1    Birkenkamp-Demtröder, K.2
  • 14
    • 36549071997 scopus 로고    scopus 로고
    • Mutations in smooth muscle α-actin (ACTA2) lead to thoracic aortic aneurysms and dissections
    • D.-C. Guo, and H. Pannu Mutations in smooth muscle α-actin (ACTA2) lead to thoracic aortic aneurysms and dissections Nat. Genet. 39 12 2007 1488 1493
    • (2007) Nat. Genet. , vol.39 , Issue.12 , pp. 1488-1493
    • Guo, D.-C.1    Pannu, H.2
  • 15
    • 0030240869 scopus 로고    scopus 로고
    • Social network analysis: An approach and technique for the study of information exchange
    • C. Haythornthwaite Social network analysis: an approach and technique for the study of information exchange Libr. Inf. Sci. Res. 18 4 1996 323 342
    • (1996) Libr. Inf. Sci. Res. , vol.18 , Issue.4 , pp. 323-342
    • Haythornthwaite, C.1
  • 16
    • 61449172037 scopus 로고    scopus 로고
    • Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
    • D.W. Huang, and B.T. Sherman Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources Nat. Protoc. 4 1 2008 44 57
    • (2008) Nat. Protoc. , vol.4 , Issue.1 , pp. 44-57
    • Huang, D.W.1    Sherman, B.T.2
  • 18
    • 0142121516 scopus 로고    scopus 로고
    • Exploration, normalization, and summaries of high density oligonucleotide array probe level data
    • R.A. Irizarry, and B. Hobbs Exploration, normalization, and summaries of high density oligonucleotide array probe level data Biostatistics 4 2 2003 249 264
    • (2003) Biostatistics , vol.4 , Issue.2 , pp. 249-264
    • Irizarry, R.A.1    Hobbs, B.2
  • 19
    • 84859880855 scopus 로고    scopus 로고
    • Radiotherapy with or without chemotherapy in muscle-invasive bladder cancer
    • N.D. James, and S.A. Hussain Radiotherapy with or without chemotherapy in muscle-invasive bladder cancer N. Engl. J. Med. 366 16 2012 1477 1488
    • (2012) N. Engl. J. Med. , vol.366 , Issue.16 , pp. 1477-1488
    • James, N.D.1    Hussain, S.A.2
  • 20
    • 33749183595 scopus 로고    scopus 로고
    • Identification of differentially expressed genes in human bladder cancer through genome-wide gene expression profiling
    • K. Kawakami, and H. Enokida Identification of differentially expressed genes in human bladder cancer through genome-wide gene expression profiling Oncol. Rep. 16 3 2006 521 531
    • (2006) Oncol. Rep. , vol.16 , Issue.3 , pp. 521-531
    • Kawakami, K.1    Enokida, H.2
  • 21
    • 38049092434 scopus 로고    scopus 로고
    • Normalization of microarray expression data using within-pedigree pool and its effect on linkage analysis
    • Biomed Central Limited
    • Y. Kim, and B.Q. Doan Normalization of microarray expression data using within-pedigree pool and its effect on linkage analysis BMC Proceedings Biomed Central Limited 2007
    • (2007) BMC Proceedings
    • Kim, Y.1    Doan, B.Q.2
  • 22
    • 0038705314 scopus 로고    scopus 로고
    • Human DNA topoisomerase-IIα expression as a prognostic factor for transitional cell carcinoma of the urinary bladder
    • R. Koren, and V. Kugel Human DNA topoisomerase-IIα expression as a prognostic factor for transitional cell carcinoma of the urinary bladder BJU Int. 91 6 2003 489 492
    • (2003) BJU Int. , vol.91 , Issue.6 , pp. 489-492
    • Koren, R.1    Kugel, V.2
  • 23
    • 84887060169 scopus 로고    scopus 로고
    • Alpha-smooth muscle actin (ACTA2) is required for metastatic potential of human lung adenocarcinoma
    • H.W. Lee, and Y.M. Park Alpha-smooth muscle actin (ACTA2) is required for metastatic potential of human lung adenocarcinoma Clin. Cancer Res. 19 21 2013 5879 5889
    • (2013) Clin. Cancer Res. , vol.19 , Issue.21 , pp. 5879-5889
    • Lee, H.W.1    Park, Y.M.2
  • 24
    • 77951756330 scopus 로고    scopus 로고
    • Combined gene expression and genomic profiling define two intrinsic molecular subtypes of urothelial carcinoma and gene signatures for molecular grading and outcome
    • D. Lindgren, and A. Frigyesi Combined gene expression and genomic profiling define two intrinsic molecular subtypes of urothelial carcinoma and gene signatures for molecular grading and outcome Cancer Res. 70 9 2010 3463 3472
    • (2010) Cancer Res. , vol.70 , Issue.9 , pp. 3463-3472
    • Lindgren, D.1    Frigyesi, A.2
  • 25
    • 77957272055 scopus 로고    scopus 로고
    • Expression and biological-clinical significance of hTR, hTERT and CKS2 in washing fluids of patients with bladder cancer
    • L. Mezzasoma, and C. Antognelli Expression and biological-clinical significance of hTR, hTERT and CKS2 in washing fluids of patients with bladder cancer BMC Urol. 10 1 2010 17
    • (2010) BMC Urol. , vol.10 , Issue.1 , pp. 17
    • Mezzasoma, L.1    Antognelli, C.2
  • 26
    • 84883006605 scopus 로고    scopus 로고
    • UBE2C is a marker of unfavorable prognosis in bladder cancer after radical cystectomy
    • T. Morikawa, and T. Kawai UBE2C is a marker of unfavorable prognosis in bladder cancer after radical cystectomy Int. J. Clin. Exp. Pathol. 6 7 2013 1367
    • (2013) Int. J. Clin. Exp. Pathol. , vol.6 , Issue.7 , pp. 1367
    • Morikawa, T.1    Kawai, T.2
  • 27
    • 84877002827 scopus 로고    scopus 로고
    • A proposed score for assessing progression in pT1 high-grade urothelial carcinoma of the bladder
    • M.R. Raspollini, and A. Minervini A proposed score for assessing progression in pT1 high-grade urothelial carcinoma of the bladder Appl. Immunohistochem. Mol. Morphol. 21 3 2013 218 227
    • (2013) Appl. Immunohistochem. Mol. Morphol. , vol.21 , Issue.3 , pp. 218-227
    • Raspollini, M.R.1    Minervini, A.2
  • 28
    • 77951944593 scopus 로고    scopus 로고
    • Regulatory impact factors: Unraveling the transcriptional regulation of complex traits from expression data
    • A. Reverter, and N.J. Hudson Regulatory impact factors: unraveling the transcriptional regulation of complex traits from expression data Bioinformatics 26 7 2010 896 904
    • (2010) Bioinformatics , vol.26 , Issue.7 , pp. 896-904
    • Reverter, A.1    Hudson, N.J.2
  • 29
    • 0037881525 scopus 로고    scopus 로고
    • Gene discovery in bladder cancer progression using cDNA microarrays
    • M. Sanchez-Carbayo, and N.D. Socci Gene discovery in bladder cancer progression using cDNA microarrays Am. J. Pathol. 163 2 2003 505 516
    • (2003) Am. J. Pathol. , vol.163 , Issue.2 , pp. 505-516
    • Sanchez-Carbayo, M.1    Socci, N.D.2
  • 30
    • 79551587720 scopus 로고    scopus 로고
    • Cytoscape 2.8: New features for data integration and network visualization
    • M.E. Smoot, and K. Ono Cytoscape 2.8: new features for data integration and network visualization Bioinformatics 27 3 2011 431 432
    • (2011) Bioinformatics , vol.27 , Issue.3 , pp. 431-432
    • Smoot, M.E.1    Ono, K.2
  • 31
    • 4544341015 scopus 로고    scopus 로고
    • Linear models and empirical bayes methods for assessing differential expression in microarray experiments
    • G.K. Smyth Linear models and empirical bayes methods for assessing differential expression in microarray experiments Stat. Appl. Genet. Mol. Biol. 3 1 2004 3
    • (2004) Stat. Appl. Genet. Mol. Biol. , vol.3 , Issue.1 , pp. 3
    • Smyth, G.K.1
  • 32
    • 79955629384 scopus 로고    scopus 로고
    • Treatment of muscle-invasive and metastatic bladder cancer: Update of the EAU guidelines
    • A. Stenzl, and N.C. Cowan Treatment of muscle-invasive and metastatic bladder cancer: update of the EAU guidelines Eur. Urol. 59 6 2011 1009 1018
    • (2011) Eur. Urol. , vol.59 , Issue.6 , pp. 1009-1018
    • Stenzl, A.1    Cowan, N.C.2
  • 33
    • 0347384078 scopus 로고    scopus 로고
    • Polymers with nano-dimensional surface features enhance bladder smooth muscle cell adhesion
    • A. Thapa, and T.J. Webster Polymers with nano-dimensional surface features enhance bladder smooth muscle cell adhesion J. Biomed. Mater. Res. A 67 4 2003 1374 1383
    • (2003) J. Biomed. Mater. Res. A , vol.67 , Issue.4 , pp. 1374-1383
    • Thapa, A.1    Webster, T.J.2
  • 35
    • 84904036546 scopus 로고    scopus 로고
    • Relationship of PCNA, C-erbB2 and CD44s expression with tumor grade and stage in urothelial carcinomas of the bladder
    • A. YIldIrIm, and M. Kösem Relationship of PCNA, C-erbB2 and CD44s expression with tumor grade and stage in urothelial carcinomas of the bladder Int. J. Clin. Exp. Med. 7 6 2014 1516
    • (2014) Int. J. Clin. Exp. Med. , vol.7 , Issue.6 , pp. 1516
    • Yildirim, A.1    Kösem, M.2
  • 36
    • 79953682249 scopus 로고    scopus 로고
    • Spotlight on differentially expressed genes in urinary bladder cancer
    • A. Zaravinos, and G.I. Lambrou Spotlight on differentially expressed genes in urinary bladder cancer PloS One 6 4 2011 e18255
    • (2011) PloS One , vol.6 , Issue.4 , pp. e18255
    • Zaravinos, A.1    Lambrou, G.I.2
  • 37
    • 84880710519 scopus 로고    scopus 로고
    • Extracting a few functionally reproducible biomarkers to build robust subnetwork-based classifiers for the diagnosis of cancer
    • L. Zhang, and S. Li Extracting a few functionally reproducible biomarkers to build robust subnetwork-based classifiers for the diagnosis of cancer Gene 526 2 2013 232 238
    • (2013) Gene , vol.526 , Issue.2 , pp. 232-238
    • Zhang, L.1    Li, S.2


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