Presence of transposons and mycoviruses in botrytis cinerea isolates collected from a german grapevine growing region

Journal of Phytopathology

Volumn 162, Issue 9, 2014, Pages 582-595

  Kecskeméti, Elizabeth ^a   Brathuhn, Arne ^a   Kogel, Karl Heinz ^b   Berkelmann Löhnertz, Beate ^a   Reineke, Annette ^a  

^a HOCHSCHULE GEISENHEIM UNIVERSITY   (Germany)

^b JUSTUS LIEBIG UNIVERSITY   (Germany)

Author keywords

Botrytis cinerea; Mycovirus; Population genetics; Transposons

Indexed keywords

BOTRYOTINIA FUCKELIANA; FUNGI; VITIS;

EID: 84927696038     PISSN: 09311785     EISSN: 14390434     Source Type: Journal    
DOI: 10.1111/jph.12230     Document Type: Article

References (55)

1. Al Rwahnih M, Daubert S, Urbez-Torres JR, Cordero F, Rowhani A. (2011) Deep sequencing evidence from single grapevine plants reveals a virome dominated by mycoviruses. Arch Virol 156:397-403.
2. Alfonso C, Raposo R, Melgarejo P. (2000) Genetic diversity in Botrytis cinerea populations on vegetable crops in greenhouses in south-eastern Spain. Plant Pathol 49:243-251.
3. Arnaud-Haond S, Belkhir K. (2007) GENCLONE: a computer program to analyse genotypic data, test for clonality and describe spatial clonal organization. Mol Ecol Notes 7:15-17.
4. Baraldi E, Bertolini P, Chierici E, Trufelli B, Luiselli D. (2002) Genetic diversity between Botrytis cinerea isolates from unstored and cold stored kiwi fruit. J Phytopathol 150:629-635.
5. Beever R, Weeds P. (2007) Taxonomy and genetic variation of Botrytis and Botryotinia. In: Elad Y, Williamson B, Tudzynski P, Delen N (eds) Botrytis: Biology, Pathology and Control. The Netherlands, Springer, pp 29-52.
6. Boine B, Pearson MN, Beever R, Bailey A, Foster G. (2009) Molecular tools for studying the interaction between Botrytis an the viruses BVX and BVF. IOBC/WPRS Bull 43:49-52.
7. Cao J, Zhou Y, Zhang L, Zhang J, Yang L, Qin L, Jiang DH, Li GQ, Huang HC. (2011) DsRNA-free transmissible hypovirulence associated with formation of intra-hyphal hyphae in Botrytis cinerea. Fungal Biol 115:660-671.
8. Castro M, Kramer K, Lorena L, Ortiz S, Benavente J, Castillo A. (1999) A new double-stranded RNA mycovirus from Botrytis cinerea. FEMS Microbiol Lett 175:95-99.
9. Castro M, Kramer K, Valdivia L, Ortiz S, Castillo A. (2003) A double-stranded RNA mycovirus confers hypovirulence-associated traits to Botrytis cinerea. FEMS Microbiol Lett 228:87-91.
10. De Miccolis Angelini RM, Habib W, Rotolo C, Pollastro S, Faretra F. (2010) Selection, characterization and genetic analysis of laboratory mutants of Botryotinia fuckeliana (Botrytis cinerea) resistant to the fungicide boscalid. Eur J Plant Pathol 128:185-199.
11. Diolez A, Marches F, Fortini D, Brygoo Y. (1995) Boty, a Long-Terminal-Repeat retroelement in the phytopathogenic fungus Botrytis cinerea. Appl Environ Microbiol 61:103-108.
12. Earl DA, vonHoldt BM. (2012) STRUCTURE HARVESTER: a website and program for visualizing STRUCTURE output and implementing the Evanno method. Conserv Genet Resour 4:359-361.
13. Esterio M, Munoz G, Ramos C, Cofre G, Estevez R, Salinas A, Auger J. (2011) Characterization of Botrytis cinerea isolates present in Thompson seedless table grapes in the Central Valley of Chile. Plant Dis 95:683-690.
14. Evanno G, Regnaut S, Goudet J. (2005) Detecting the number of clusters of individuals using the software structure: a simulation study. Mol Ecol 14:2611-2620.
15. Excoffier L, Laval G, Schneider S. (2005) Arlequin (version 3.0): an integrated software package for population genetics data analysis. Evol Bioinform Online 1:47-50.
16. Falush D, Stephens M, Pritchard JK. (2003) Inference of population structure using multilocus genotype data: linked loci and correlated allele frequencies. Genetics 164:1567-1587.
17. Fournier E, Giraud T. (2008) Sympatric genetic differentiation of a generalist pathogenic fungus, Botrytis cinerea, on two different host plants, grapevine and bramble. J Evol Biol 21:122-132.
18. Fournier E, Giraud T, Loiseau A, Vautrin D, Estoup A, Solignac M, Cornuet JM, Brygoo Y. (2002) Characterization of nine polymorphic microsatellite loci in the fungus Botrytis cinerea (Ascomycota). Mol Ecol Notes 2:253-255.
19. Fournier E, Levis C, Fortini D, Leroux P, Giraud T, Brygoo Y. (2003) Characterization of Bc-hch, the Botrytis cinerea homolog of the Neurospora crassa het-c vegetative incompatibility locus, and its use as a population marker. Mycologia 95:251-261.
20. Fournier E, Giraud T, Albertini C, Brygoo Y. (2005) Partition of the Botrytis cinerea complex in France using multiple gene genealogies. Mycologia 97:1251-1267.
21. Gesellschaft für Rheingauer Weinkultur (2008) Terroir Hessen. http://www.terroir-hessen.de/english/start.htm (verified January 20, 2014).
22. Ghabrial SA. (1994) New developments in fungal virology. Adv Virus Res 43:303-388.
23. Giraud T, Fortini D, Levis C, Leroux P, Brygoo Y. (1997) RFLP markers show genetic recombination in Botryotinia fuckeliana (Botrytis cinerea) and transposable elements reveal two sympatric species. Mol Biol Evol 14:1177-1185.
24. Giraud T, Fortini D, Levis C, Lamarque C, Leroux P, LoBuglio K, Brygoo Y. (1999) Two sibling species of the Botrytis cinerea complex, transposa and vacuma, are found in sympatry on numerous host plants. Phytopathology 89:967-973.
25. Goudet J. (1995) FSTAT (Version 1.2): a computer program to calculate F-statistics. J Hered 86:485-486.
26. Howitt RLJ, Beever RE, Pearson MN, Forster RLS. (1995) Presence of double-stranded RNA and virus-like particles in Botrytis cinerea. Mycol Res 99:1472-1478.
27. Howitt RLJ, Beever RE, Pearson MN, Forster RLS. (2001) Genome characterization of Botrytis virus F, a flexuous rod-shaped mycovirus resembling plant 'potex-like' viruses. J Gen Virol 82:67-78.
28. Howitt RLJ, Beever RE, Pearson MN, Forster RLS. (2006) Genome characterization of a flexuous rod-shaped mycovirus, Botrytis virus X, reveals high amino acid identity to genes from plant 'potex-like' viruses. Arch Virol 151:563-579.
29. Isenegger DA, Ades PK, Ford R, Taylor PWJ. (2008a) Status of the Botrytis cinerea species complex and microsatellite analysis of transposon types in South Asia and Australia. Fungal Divers 29:17-26.
30. Isenegger DA, Macleod WJ, Ford R, Taylor PWJ. (2008b) Genotypic diversity and migration of clonal lineages of Botrytis cinerea from chickpea fields of Bangladesh inferred by microsatellite markers. Plant Pathol 57:967-973.
31. Jacometti MA, Wratten SD, Walter M. (2010) Review: alternatives to synthetic fungicides for Botrytis cinerea management in vineyards. Aust J Grape Wine Res 16:154-172.
32. Karchani-Balma S, Gautier A, Raies A, Fournier E. (2008) Geography, plants, and growing systems shape the genetic structure of Tunisian Botrytis cinerea populations. Phytopathology 98:1271-1279.
33. Kretschmer M, Hahn M. (2008) Fungicide resistance and genetic diversity of Botrytis cinerea isolates from a vineyard in Germany. J Plant Dis Prot 115:214-219.
34. Leroch M, Kretschmer M, Hahn M. (2011) Fungicide resistance phenotypes of Botrytis cinerea isolates from commercial vineyards in south west Germany. J Phytopathol 159:63-65.
35. Levis C, Fortini D, Brygoo Y. (1997) Flipper, a mobile Fot1-like transposable element in Botrytis cinerea. Mol Gen Genet 254:674-680.
36. Linsenmeier AW, Loos U, Löhnertz O. (2008) Must composition and nitrogen uptake in a long-term trial as affected by timing of nitrogen fertilization in a cool-climate Riesling vineyard. Am J Enol Vit 59:255-264.
37. Ma ZH, Michailides TJ. (2005) Genetic structure of Botrytis cinerea populations from different host plants in California. Plant Dis 89:1083-1089.
38. Martinez F, Blancard D, Lecomte P, Levis C, Dubos B, Fermaud M. (2003) Phenotypic differences between vacuma and transposa subpopulations of Botrytis cinerea. Eur J Plant Pathol 109:479-488.
39. Martinez F, Dubos B, Fermaud M. (2005) The role of saprotrophy and virulence in the population dynamics of Botrytis cinerea in vineyards. Phytopathology 95:692-700.
40. Martinez F, Corio-Costet MF, Levis C, Coarer M, Fermaud M. (2008) New PCR primers applied to characterize distribution of Botrytis cinerea populations in French vineyards. Vitis 47:217-226.
41. Milicevic T, Topolovec-Pintaric S, Cvjetkovic B, Ivic D, Duralija B. (2006) Sympatric subpopulations of Botrytis cinerea on strawberries based on the content of transposable elements and their connection with resistance to botryticides. Acta Hortic 708:115-118.
42. Munoz G, Hinrichsen P, Brygoo Y, Giraud T. (2002) Genetic characterisation of Botrytis cinerea populations in Chile. Mycol Res 106:594-601.
43. Nuss DL. (1992) Biological control of chestnut blight: an example of virus-mediated attenuation of fungal pathogenesis. Microbiol Rev 56:561-576.
44. Pearson M, Beever R, Boine B, Arthur K. (2009a) Mycoviruses of filamentous fungi and their relevance to plant pathology. Mol Plant Pathol 10:115-128.
45. Pearson M, Beever R, Boine B, Tan C. (2009b) Can mycoviruses be used for the biocontrol of the plant pathogenic fungus Botrytis cinerea. IOBC/WPRS Bull 43:7-10.
46. Pritchard JK, Stephens M, Donnelly P. (2000) Inference of population structure using multilocus genotype data. Genetics 155:945-959.
47. Prospero S, Conedera M, Heiniger U, Rigling D. (2006) Saprophytic activity and sporulation of Cryphonectria parasitica on dead chestnut wood in forests with naturally established hypovirulence. Phytopathology 96:1337-1344.
48. Rice WR. (1989) Analyzing tables of statistical tests. Evolution 43:223-225.
49. Schuelke M. (2000) An economic method for the fluorescent labeling of PCR fragments. Nat Biotechnol 18:233-234.
50. Staats M, van Baarlen P, van Kan JAL. (2007) AFLP analysis of genetic diversity in populations of Botrytis elliptica and Botrytis tulipae from the Netherlands. Eur J Plant Pathol 117:219-235.
51. Steel CC, Greer LA, Savocchia S, Samuelian SK. (2011) Effect of temperature on Botrytis cinerea, Colletotrichum acutatum and Greeneria uvicola mixed fungal infection of Vitis vinifera grape berries. Vitis 50:69-71.
52. Váczy K, Sándor E, Karaffa L, Fekete E, Fekete E, Arnyasi M, Czegledi L, Koevics G, Druzhinina I, Kubicek C. (2008) Sexual recombination in the Botrytis cinerea populations in Hungarian vineyards. Phytopathology 98:1312-1319.
53. Vilches S, Castillo A. (1997) A double-stranded RNA mycovirus in Botrytis cinerea. FEMS Microbiol Lett 155:125-130.
54. Walker AS, Gautier A, Confais J, Martinho D, Viaud M, Le P, Cheur P, Dupont J, Fournier E. (2011) Botrytis pseudocinerea, a new cryptic species causing gray mold in French vineyards in sympatry with Botrytis cinerea. Phytopathology 101:1433-1445.
55. Wu MD, Zhang L, Li GQ, Jiang DH, Hou MS, Huang HC. (2007) Hypovirulence and double-stranded RNA in Botrytis cinerea. Phytopathology 97:1590-1599.