-
1
-
-
84864439921
-
FastML: a web server for probabilistic reconstruction of ancestral sequences
-
W580-W584
-
Ashkenazy H., et al. FastML: a web server for probabilistic reconstruction of ancestral sequences. Nucleic Acids Res. 2012, 40. W580-W584. 10.1093/nar/gks498.
-
(2012)
Nucleic Acids Res.
, vol.40
-
-
Ashkenazy, H.1
-
2
-
-
84908075494
-
Portrait of a Killer: genome of the 2014 EBOV Outbreak Strain
-
Basler C.F. Portrait of a Killer: genome of the 2014 EBOV Outbreak Strain. Cell Host Microbe 2014, 16:419-421. 10.1016/j.chom.2014.09.012.
-
(2014)
Cell Host Microbe
, vol.16
, pp. 419-421
-
-
Basler, C.F.1
-
3
-
-
84882787658
-
Structural rearrangement of ebola virus VP40 begets multiple functions in the virus life cycle
-
Bornholdt Z.A., et al. Structural rearrangement of ebola virus VP40 begets multiple functions in the virus life cycle. Cell 2013, 154:763-774. 10.1016/j.cell.2013.07.015.
-
(2013)
Cell
, vol.154
, pp. 763-774
-
-
Bornholdt, Z.A.1
-
4
-
-
34447278575
-
Ebola virus glycoprotein 1: identification of residues important for binding and postbinding events
-
Brindley, M.A. et al.. Ebola virus glycoprotein 1: identification of residues important for binding and postbinding events. J. Virol. 81, 7702-7709, 10.1128/JVI.02433-06 (2007).
-
J. Virol. 81, 7702-7709, 10.1128/JVI.02433-06 (2007).
-
-
Brindley, M.A.1
-
5
-
-
79958029735
-
Evolution and disorder
-
Brown C.J., Johnson A.K., Dunker A.K., Daughdrill G.W. Evolution and disorder. Curr. Opin. Struct. Biol. 2011, 21:441-446. 10.1016/j.sbi.2011.02.005.
-
(2011)
Curr. Opin. Struct. Biol.
, vol.21
, pp. 441-446
-
-
Brown, C.J.1
Johnson, A.K.2
Dunker, A.K.3
Daughdrill, G.W.4
-
6
-
-
82655175482
-
Attributes of short linear motifs
-
Davey, N.E. et al.. Attributes of short linear motifs. Mol. BioSyst. 8, 268-281, 10.1039/c1mb05231d (2012).
-
(2012)
Mol. BioSyst.
, vol.8
, pp. 268-281
-
-
Davey, N.E.1
-
7
-
-
24044538903
-
IUPred: web server for the prediction of intrinsically unstructured regions of proteins based on estimated energy content
-
Dosztanyi Z., Csizmok V., Tompa P., Simon I. IUPred: web server for the prediction of intrinsically unstructured regions of proteins based on estimated energy content. Bioinformatics 2005, 21:3433-3434. 10.1093/bioinformatics/bti541.
-
(2005)
Bioinformatics
, vol.21
, pp. 3433-3434
-
-
Dosztanyi, Z.1
Csizmok, V.2
Tompa, P.3
Simon, I.4
-
8
-
-
70349996473
-
ANCHOR: web server for predicting protein binding regions in disordered proteins
-
Dosztanyi Z., Meszaros B., Simon I. ANCHOR: web server for predicting protein binding regions in disordered proteins. Bioinformatics 2009, 25:2745-2746. 10.1093/bioinformatics/btp518.
-
(2009)
Bioinformatics
, vol.25
, pp. 2745-2746
-
-
Dosztanyi, Z.1
Meszaros, B.2
Simon, I.3
-
9
-
-
84907017637
-
The structure of the C-terminal domain of the Zaire ebolavirus nucleoprotein
-
Dziubańska P.J., Derewenda U., Ellena J.F., Engel D.A., Derewenda Z.S. The structure of the C-terminal domain of the Zaire ebolavirus nucleoprotein. Acta Crystallogr. Sect. D: Biol. Crystallogr. 2014, 70:2420-2429. 10.1107/S1399004714014710.
-
(2014)
Acta Crystallogr. Sect. D: Biol. Crystallogr.
, vol.70
, pp. 2420-2429
-
-
Dziubańska, P.J.1
Derewenda, U.2
Ellena, J.F.3
Engel, D.A.4
Derewenda, Z.S.5
-
10
-
-
84904438309
-
The Ebola virus disease outbreak in West Africa
-
Gatherer D. The Ebola virus disease outbreak in West Africa. J. Gen. Virol. 2014, 95(2014)):1619-1624. 10.1099/vir.0.067199-0.
-
(2014)
J. Gen. Virol.
, vol.95
, Issue.2014
, pp. 1619-1624
-
-
Gatherer, D.1
-
11
-
-
84922011265
-
The unprecedented scale of the West African Ebola virus disease outbreak is due to environmental and sociological factors, not special attributes of the currently circulating strain of the virus
-
Gatherer D. The unprecedented scale of the West African Ebola virus disease outbreak is due to environmental and sociological factors, not special attributes of the currently circulating strain of the virus. Evid.-Based Med. 2015, 20:28. 10.1136/ebmed-2014-110127.
-
(2015)
Evid.-Based Med.
, vol.20
, pp. 28
-
-
Gatherer, D.1
-
12
-
-
84907193791
-
Genomic surveillance elucidates Ebola virus origin and transmission during the 2014 outbreak
-
Gire S.K., et al. Genomic surveillance elucidates Ebola virus origin and transmission during the 2014 outbreak. Science 2014, 345:1369-1372. 10.1126/science.1259657.
-
(2014)
Science
, vol.345
, pp. 1369-1372
-
-
Gire, S.K.1
-
13
-
-
0037389018
-
The matrix protein VP40 from Ebola virus octamerizes into pore-like structures with specific RNA binding properties
-
Gomis-Rüth F.X., et al. The matrix protein VP40 from Ebola virus octamerizes into pore-like structures with specific RNA binding properties. Structure 2003, 11:423-433.
-
(2003)
Structure
, vol.11
, pp. 423-433
-
-
Gomis-Rüth, F.X.1
-
14
-
-
0036291145
-
Predicting changes in the stability of proteins and protein complexes: a study of more than 1000 mutations
-
Guerois R., Nielsen J.E., Serrano L. Predicting changes in the stability of proteins and protein complexes: a study of more than 1000 mutations. J. Mol. Biol. 2002, 320:369-387. 10.1016/S0022-2836(02)00442-4.
-
(2002)
J. Mol. Biol.
, vol.320
, pp. 369-387
-
-
Guerois, R.1
Nielsen, J.E.2
Serrano, L.3
-
15
-
-
33846282646
-
Crystal structure of the C-terminal domain of Ebola virus VP30 reveals a role in transcription and nucleocapsid association
-
Hartlieb B., Muziol T., Weissenhorn W., Becker S. Crystal structure of the C-terminal domain of Ebola virus VP30 reveals a role in transcription and nucleocapsid association. Proc. Natl. Acad. Sci. USA 2007, 104:624-629. 10.1073/pnas.0606730104.
-
(2007)
Proc. Natl. Acad. Sci. USA
, vol.104
, pp. 624-629
-
-
Hartlieb, B.1
Muziol, T.2
Weissenhorn, W.3
Becker, S.4
-
17
-
-
17744396121
-
Not so different after all: a comparison of methods for detecting amino acid sites under selection
-
Kosakovsky Pond S.L., Frost S.D.W. Not so different after all: a comparison of methods for detecting amino acid sites under selection. Mol. Biol. Evol. 2005, 22:1208-1222. 10.1093/molbev/msi105.
-
(2005)
Mol. Biol. Evol.
, vol.22
, pp. 1208-1222
-
-
Kosakovsky Pond, S.L.1
Frost, S.D.W.2
-
18
-
-
0020475449
-
A simple method for displaying the hydropathic character of a protein
-
Kyte J., Doolittle R.F. A simple method for displaying the hydropathic character of a protein. J. Mol. Biol. 1982, 157:105-132.
-
(1982)
J. Mol. Biol.
, vol.157
, pp. 105-132
-
-
Kyte, J.1
Doolittle, R.F.2
-
19
-
-
47049107589
-
Structure of the Ebola virus glycoprotein bound to an antibody from a human survivor
-
Lee J.E., et al. Structure of the Ebola virus glycoprotein bound to an antibody from a human survivor. Nature 2008, 454:177-182. 10.1038/nature07082.
-
(2008)
Nature
, vol.454
, pp. 177-182
-
-
Lee, J.E.1
-
20
-
-
58849098002
-
Structure of the Ebola VP35 interferon inhibitory domain
-
Leung D.W., et al. Structure of the Ebola VP35 interferon inhibitory domain. Proc. Natl. Acad. Sci. USA 2009, 106:411-416. 10.1073/pnas.0807854106.
-
(2009)
Proc. Natl. Acad. Sci. USA
, vol.106
, pp. 411-416
-
-
Leung, D.W.1
-
21
-
-
76349125544
-
Structural basis for dsRNA recognition and interferon antagonism by Ebola VP35
-
Leung D.W., et al. Structural basis for dsRNA recognition and interferon antagonism by Ebola VP35. Nat. Struct. Mol. Biol. 2010, 17:165-172. 10.1038/nsmb.1765.
-
(2010)
Nat. Struct. Mol. Biol.
, vol.17
, pp. 165-172
-
-
Leung, D.W.1
-
22
-
-
0034663722
-
The penultimate rotamer library
-
Lovell S.C., Word J.M., Richardson J.S., Richardson D.C. The penultimate rotamer library. Proteins 2000, 40:389-408.
-
(2000)
Proteins
, vol.40
, pp. 389-408
-
-
Lovell, S.C.1
Word, J.M.2
Richardson, J.S.3
Richardson, D.C.4
-
23
-
-
16244391124
-
Comprehensive analysis of ebola virus GP1 in viral entry
-
Manicassamy B., Wang J., Jiang H., Rong L. Comprehensive analysis of ebola virus GP1 in viral entry. J. Virol. 2005, 79:4793-4805. 10.1128/JVI.79.8.4793-4805.2005.
-
(2005)
J. Virol.
, vol.79
, pp. 4793-4805
-
-
Manicassamy, B.1
Wang, J.2
Jiang, H.3
Rong, L.4
-
24
-
-
67049119327
-
Prediction of protein binding regions in disordered proteins
-
e1000376
-
Meszaros B., Simon I., Dosztanyi Z. Prediction of protein binding regions in disordered proteins. PLoS Comput. Biol. 2009, 5. e1000376. 10.1371/journal.pcbi.1000376.
-
(2009)
PLoS Comput. Biol.
, vol.5
-
-
Meszaros, B.1
Simon, I.2
Dosztanyi, Z.3
-
25
-
-
33749133853
-
Identification of two amino acid residues on Ebola virus glycoprotein 1 critical for cell entry
-
Mpanju O.M., Towner J.S., Dover J.E., Nichol S.T., Wilson C.A. Identification of two amino acid residues on Ebola virus glycoprotein 1 critical for cell entry. Virus Res. 2006, 121:205-214. 10.1016/j.virusres.2006.06.002.
-
(2006)
Virus Res.
, vol.121
, pp. 205-214
-
-
Mpanju, O.M.1
Towner, J.S.2
Dover, J.E.3
Nichol, S.T.4
Wilson, C.A.5
-
26
-
-
78650994056
-
Computational prediction of O-linked glycosylation sites that preferentially map on intrinsically disordered regions of extracellular proteins
-
Nishikawa I., et al. Computational prediction of O-linked glycosylation sites that preferentially map on intrinsically disordered regions of extracellular proteins. Int. J. Mol. Sci. 2010, 11:4991-5008. 10.3390/ijms11124991.
-
(2010)
Int. J. Mol. Sci.
, vol.11
, pp. 4991-5008
-
-
Nishikawa, I.1
-
27
-
-
0015722319
-
Slightly deleterious mutant substitutions in evolution
-
Ohta T. Slightly deleterious mutant substitutions in evolution. Nature 1973, 246:96-98.
-
(1973)
Nature
, vol.246
, pp. 96-98
-
-
Ohta, T.1
-
28
-
-
84911891126
-
Strategies for containing Ebola in West Africa
-
Pandey A., et al. Strategies for containing Ebola in West Africa. Science 2014, 346:991-995.
-
(2014)
Science
, vol.346
, pp. 991-995
-
-
Pandey, A.1
-
30
-
-
0027136282
-
Comparative protein modelling by satisfaction of spatial restraints
-
Sali A., Blundell T.L. Comparative protein modelling by satisfaction of spatial restraints. J. Mol. Biol. 1993, 234:779-815. 10.1006/jmbi.1993.1626.
-
(1993)
J. Mol. Biol.
, vol.234
, pp. 779-815
-
-
Sali, A.1
Blundell, T.L.2
-
31
-
-
0029976177
-
The virion glycoproteins of Ebola viruses are encoded in two reading frames and are expressed through transcriptional editing
-
Sanchez A., Trappier S.G., Mahy B.W., Peters C.J., Nichol S.T. The virion glycoproteins of Ebola viruses are encoded in two reading frames and are expressed through transcriptional editing. Proc. Natl. Acad. Sci. USA 1996, 93:3602-3607.
-
(1996)
Proc. Natl. Acad. Sci. USA
, vol.93
, pp. 3602-3607
-
-
Sanchez, A.1
Trappier, S.G.2
Mahy, B.W.3
Peters, C.J.4
Nichol, S.T.5
-
33
-
-
84899553363
-
RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
-
Stamatakis A. RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies. Bioinformatics 2014, 30:1312-1313. 10.1093/bioinformatics/btu033.
-
(2014)
Bioinformatics
, vol.30
, pp. 1312-1313
-
-
Stamatakis, A.1
-
34
-
-
3242891318
-
The DISOPRED server for the prediction of protein disorder
-
Ward J.J., McGuffin L.J., Bryson K., Buxton B.F., Jones D.T. The DISOPRED server for the prediction of protein disorder. Bioinformatics 2004, 20:2138-2139. 10.1093/bioinformatics/bth195.
-
(2004)
Bioinformatics
, vol.20
, pp. 2138-2139
-
-
Ward, J.J.1
McGuffin, L.J.2
Bryson, K.3
Buxton, B.F.4
Jones, D.T.5
-
35
-
-
0035031966
-
A general empirical model of protein evolution derived from multiple protein families using a maximum-likelihood approach
-
Whelan S., Goldman N. A general empirical model of protein evolution derived from multiple protein families using a maximum-likelihood approach. Mol. Biol. Evol. 2001, 18:691-699.
-
(2001)
Mol. Biol. Evol.
, vol.18
, pp. 691-699
-
-
Whelan, S.1
Goldman, N.2
-
36
-
-
0033613812
-
Visualizing and quantifying molecular goodness-of-fit: small-probe contact dots with explicit hydrogen atoms
-
Word J.M., et al. Visualizing and quantifying molecular goodness-of-fit: small-probe contact dots with explicit hydrogen atoms. J. Mol. Biol. 1999, 285:1711-1733. 10.1006/jmbi.1998.2400.
-
(1999)
J. Mol. Biol.
, vol.285
, pp. 1711-1733
-
-
Word, J.M.1
-
37
-
-
0033614004
-
Asparagine and glutamine: using hydrogen atom contacts in the choice of side-chain amide orientation
-
Word J.M., Lovell S.C., Richardson J.S., Richardson D.C. Asparagine and glutamine: using hydrogen atom contacts in the choice of side-chain amide orientation. J. Mol. Biol. 1999, 285:1735-1747. 10.1006/jmbi.1998.2401.
-
(1999)
J. Mol. Biol.
, vol.285
, pp. 1735-1747
-
-
Word, J.M.1
Lovell, S.C.2
Richardson, J.S.3
Richardson, D.C.4
-
38
-
-
84896691834
-
Intrinsic disorder in proteins involved in the innate antiviral immunity: another flexible side of a molecular arms race
-
Xue B., Uversky V.N. Intrinsic disorder in proteins involved in the innate antiviral immunity: another flexible side of a molecular arms race. J. Mol. Biol. 2014, 426:1322-1350. 10.1016/j.jmb.2013.10.030.
-
(2014)
J. Mol. Biol.
, vol.426
, pp. 1322-1350
-
-
Xue, B.1
Uversky, V.N.2
-
40
-
-
84860903741
-
The ebola virus interferon antagonist VP24 directly binds STAT1 and has a novel, pyramidal fold
-
e1002550
-
Zhang A.P.P., et al. The ebola virus interferon antagonist VP24 directly binds STAT1 and has a novel, pyramidal fold. PLoS Pathog. 2012, 8. e1002550. 10.1371/journal.ppat.1002550.
-
(2012)
PLoS Pathog.
, vol.8
-
-
Zhang, A.P.P.1
|