Thermophilic and cellulolytic consortium isolated from composting plants improves anaerobic digestion of cellulosic biomass: Toward a microbial resource management approach

Bioresource Technology

Volumn 189, Issue , 2015, Pages 138-144

  Kinet, R ^a   Destain, J ^a   Hiligsmann, S ^a   Thonart, P ^a   Delhalle, L ^b   Taminiau, B ^a   Daube, G ^a   Delvigne, F ^a  

^a UNIVERSITY OF LIÈGE   (Belgium)

^b Quality Partner SA   (Belgium)

Author keywords

Anaerobic digestion; Composting; Microbial communities; Process engineering; Pyrosequencing

Indexed keywords

CELLULOSE; COMPOSTING; MICROORGANISMS; PROCESS ENGINEERING;

ANAEROBIC DEGRADATION; CELLULOSE DEGRADATION; DEGRADATION POTENTIAL; ENVIRONMENTAL BIOTECHNOLOGY; MICROBIAL COMMUNITIES; MICROBIAL POPULATIONS; MICROBIAL RESOURCE MANAGEMENTS; PYROSEQUENCING;

ANAEROBIC DIGESTION;

ACETIC ACID; ALCOHOL; BIOGAS; CARBON; CELLULOSE; DNA 16S; GLUCOSE; LACTIC ACID; METHANE; BIOFUEL; SOIL; VOLATILE FATTY ACID;

ANOXIC CONDITIONS; BACTERIUM; BIOGAS; BIOTECHNOLOGY; CELLULOSE; COMPOSTING; HYDROLYSIS; MICROBIAL COMMUNITY; RESOURCE MANAGEMENT;

ACIDIFICATION; ANAEROBIC DIGESTION; ARTICLE; BIOMASS; BIOTRANSFORMATION; CLOSTRIDIUM THERMOCELLUM; COMMUNITY STRUCTURE; COMPOSTING; CONTROLLED STUDY; DEGRADATION KINETICS; ENRICHMENT CULTURE; ENZYME DEGRADATION; FERMENTATION; FIRMICUTES; GAS CHROMATOGRAPHY; HYDROLYSIS; INDUSTRIAL SLUDGE; METAGENOMICS; MICROBIAL COMMUNITY; MICROBIAL CONSORTIUM; MICROBIAL DEGRADATION; MICROBIAL DIVERSITY; MICROBIAL METABOLISM; NONHUMAN; PH; PRIORITY JOURNAL; PYROSEQUENCING; RESOURCE MANAGEMENT; SPECIES DISTRIBUTION; THERMOANAEROBACTERIUM; THERMOPHILIC BACTERIUM; ANAEROBIC GROWTH; BIOSYNTHESIS; KINETICS; METABOLISM; MICROBIOLOGY; PLANT; PROCEDURES; SOIL; TEMPERATURE; WASTE DISPOSAL;

CLOSTRIDIA; OTUS;

ANAEROBIOSIS; BIOFUELS; BIOMASS; CELLULOSE; FATTY ACIDS, VOLATILE; HYDROGEN-ION CONCENTRATION; KINETICS; METHANE; MICROBIAL CONSORTIA; PLANTS; REFUSE DISPOSAL; SOIL; TEMPERATURE;

EID: 84927592504     PISSN: 09608524     EISSN: 18732976     Source Type: Journal    
DOI: 10.1016/j.biortech.2015.04.010     Document Type: Article

References (33)

1. Altschul S.F., Gish W., Miller W., Myers E.W., Lipman D.J. Basic local alignment search tool. J. Mol. Biol. 1990, 215:403-410.
2. Brosius J., Dull T.J., Sleeter D.D., Noller H.F. Gene organization and primary structure of a ribosomal RNA operon from Escherichia coli. J. Mol. Biol. 1981, 148:107-127.
3. Buswell A.M., Mueller H.F. Mechanism of methane fermentation. Ind. Eng. Chem. 1952, 44:550-552.
4. Crespo C., Pozzo T., Karlsson E.N., Alvarez M.T., Mattiasson B. Caloramator boliviensis sp. nov., a thermophilic, ethanol-producing bacterium isolated from a hot spring. Int. J. Syst. Evol. Microbiol. 2012, 62:1679-1686.
5. De Roy K., Marzorati M., Van den Abbeele P., Van de Wiele T., Boon N. Synthetic microbial ecosystems: an exciting tool to understand and apply microbial communities. Environ. Microbiol. 2014, 16:1472-1481.
6. Delcenserie V., Taminiau B., Delhalle L., Nezer C., Doyen P., Crevecoeur S., Roussey D., Korsak N., Daube G. Microbiota characterization of a Belgian protected designation of origin cheese, Herve cheese, using metagenomic analysis. J. Dairy Sci. 2014, 97:6046-6056.
7. Edgar R.C., Haas B.J., Clemente J.C., Quince C., Knight R. UCHIME improves sensitivity and speed of chimera detection. Bioinformatics 2011, 27:2194-2200.
8. Feng Y., Yu Y., Wang X., Qu Y., Li D., He W., Kim B.H. Degradation of raw corn stover powder (RCSP) by an enriched microbial consortium and its community structure. Bioresour. Technol. 2011, 102:742-747.
9. Gladden J.M., Allgaier M., Miller C.S., Hazen T.C., VanderGheynst J.S., Hugenholtz P., Simmons B.A., Singer S.W. Glycoside hydrolase activities of thermophilic bacterial consortia adapted to switchgrass. Appl. Environ. Microbiol. 2011, 77:5804-5812.
10. Izquierdo J.A., Sizova M.V., Lynd L.R. Diversity of bacteria and glycosyl hydrolase family 48 genes in cellulolytic consortia enriched from thermophilic biocompost. Appl. Environ. Microbiol. 2010, 76:3545-3553.
11. Jabari L., Gannoun H., Cayol J.-L., Hamdi M., Fauque G., Ollivier B., Fardeau M.-L. Characterization of Defluviitalea saccharophila gen. nov., sp. nov., a thermophilic bacterium isolated from an upflow anaerobic filter treating abattoir wastewaters, and proposal of Defluviitaleaceae fam. nov. Int. J. Syst. Evol. Microbiol. 2012, 62:550-555.
12. Liu Y., Yu P., Song X., Qu Y. Hydrogen production from cellulose by co-culture of Clostridium thermocellum JN4 and Thermoanaerobacterium thermosaccharolyticum GD17. Int. J. Hydrogen Energy 2008, 33:2927-2933.
13. Martins L.F., Antunes L.P., Pascon R.C., de Oliveira J.C.F., Digiampietri L.A., Barbosa D., Peixoto B.M., Vallim M.A., Viana-Niero C., Ostroski E.H., Telles G.P., Dias Z., da Cruz J.B., Juliano L., Verjovski-Almeida S., da Silva A.M., Setubal J.C. Metagenomic analysis of a tropical composting operation at the São Paulo zoo park reveals diversity of biomass degradation functions and organisms. PLoS ONE 2013, 8:e61928.
14. Marzorati M., Wittebolle L., Boon N., Daffonchio D., Verstraete W. How to get more out of molecular fingerprints: practical tools for microbial ecology. Environ. Microbiol. 2008, 10:1571-1581.
15. Monlau F., Barakat A., Steyer J.P., Carrere H. Comparison of seven types of thermo-chemical pretreatments on the structural features and anaerobic digestion of sunflower stalks. Bioresour. Technol. 2012, 120:241-247.
16. Palmqvist E., Hahn-Hägerdal B. Fermentation of lignocellulosic hydrolysates. II: Inhibitors and mechanisms of inhibition. Bioresour. Technol. 2000, 74:25-33.
17. Pommier S., Llamas A.M., Lefebvre X. Analysis of the outcome of shredding pretreatment on the anaerobic biodegradability of paper and cardboard materials. Bioresour. Technol. 2010, 101:463-468.
18. Pruesse E., Quast C., Knittel K., Fuchs B.M., Ludwig W., Peplies J., Glöckner F.O. SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB. Nucleic Acids Res. 2007, 35:7188-7196.
19. Ren N., Cao G., Wang A., Lee D.-J., Guo W., Zhu Y. Dark fermentation of xylose and glucose mix using isolated Thermoanaerobacterium thermosaccharolyticum W16. Int. J. Hydrogen Energy 2008, 33:6124-6132.
20. Salehian P., Karimi K., Zilouei H., Jeihanipour A. Improvement of biogas production from pine wood by alkali pretreatment. Fuel 2013, 106:484-489.
21. Schloss P.D., Hay A.G., Wilson D.B., Walker L.P. Tracking temporal changes of bacterial community fingerprints during the initial stages of composting. FEMS Microbiol. Ecol. 2003, 46:1-9.
22. Schloss P.D., Westcott S.L., Ryabin T., Hall J.R., Hartmann M., Hollister E.B., Lesniewski R.A., Oakley B.B., Parks D.H., Robinson C.J., Sahl J.W., Stres B., Thallinger G.G., Van Horn D.J., Weber C.F. Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities. Appl. Environ. Microbiol. 2009, 75:7537-7541.
23. Tachaapaikoon C., Kosugi A., Pason P., Waeonukul R., Ratanakhanokchai K., Kyu K.L., Arai T., Murata Y., Mori Y. Isolation and characterization of a new cellulosome-producing Clostridium thermocellum strain. Biodegradation 2012, 23:57-68.
24. Vavilin V.A., Fernandez B., Palatsi J., Flotats X. Hydrolysis kinetics in anaerobic degradation of particulate organic material: an overview. Waste Manage. 2008, 28:939-951.
25. Verstraete W., Wittebolle L., Heylen K., Vanparys B., de Vos P., van de Wiele T., Boon N. Microbial resource management: the road to go for environmental biotechnology. Eng. Life Sci. 2007, 7:117-126.
26. Viravaidya K., Tangjerdjaras W., Tachaapaikoon C. Cellulosic bioethanol from clostridium thermocellum fermentation. 2011 Int. Conf. Chem. Chem. Process 2011, vol. 10. IACSIT Press.
27. Wang Y.-S., Byrd C.S., Barlaz M.A. Anaerobic biodegradability of cellulose and hemicellulose in excavated refuse samples using a biochemical methane potential assay. J. Ind. Microbiol. Biotechnol. 1994, 13:147-153.
28. Wang Y., Qian P.-Y. Conservative fragments in bacterial 16S rRNA genes and primer design for 16S ribosomal DNA amplicons in metagenomic studies. PLoS ONE 2009, 4:e7401.
29. Wittebolle L., Marzorati M., Clement L., Balloi A., Daffonchio D., Heylen K., De Vos P., Verstraete W., Boon N. Initial community evenness favours functionality under selective stress. Nature 2009, 458:623-626.
30. Wongwilaiwalin S., Rattanachomsri U., Laothanachareon T., Eurwilaichitr L., Igarashi Y., Champreda V. Analysis of a thermophilic lignocellulose degrading microbial consortium and multi-species lignocellulolytic enzyme system. Enzyme Microb. Technol. 2010, 47:283-290.
31. Yan L., Gao Y., Wang Y., Liu Q., Sun Z., Fu B., Wen X., Cui Z., Wang W. Diversity of a mesophilic lignocellulolytic microbial consortium which is useful for enhancement of biogas production. Bioresour. Technol. 2012, 111:49-54.
32. Zhang Q., He J., Tian M., Mao Z., Tang L., Zhang J., Zhang H. Enhancement of methane production from cassava residues by biological pretreatment using a constructed microbial consortium. Bioresour. Technol. 2011, 102:8899-8906.
33. Zuroff T.R., Curtis W.R. Developing symbiotic consortia for lignocellulosic biofuel production. Appl. Microbiol. Biotechnol. 2012, 93:1423-1435.