메뉴 건너뛰기




Volumn 114, Issue 1, 2015, Pages 48-55

Phylogenomics of the killer whale indicates ecotype divergence in sympatry

Author keywords

[No Author keywords available]

Indexed keywords

CETACEA; DELPHINIDAE; ORCINUS ORCA;

EID: 84927566945     PISSN: 0018067X     EISSN: 13652540     Source Type: Journal    
DOI: 10.1038/hdy.2014.67     Document Type: Article
Times cited : (47)

References (56)
  • 1
    • 84867099945 scopus 로고    scopus 로고
    • Influences of past climatic changes on historical population structure and demography of a cosmopolitan marine predator, the common dolphin (genus Delphinus
    • Amaral AR, Beheregaray LB, Bilgmann K, Freitas L, Robertson KM, Sequeira M et al. (2012). Influences of past climatic changes on historical population structure and demography of a cosmopolitan marine predator, the common dolphin (genus Delphinus). Mol Ecol 9: 4854-4871.
    • (2012) Mol Ecol , vol.9 , pp. 4854-4871
    • Amaral, A.R.1    Beheregaray, L.B.2    Bilgmann, K.3    Freitas, L.4    Robertson, K.M.5    Sequeira, M.6
  • 2
  • 4
    • 0037625296 scopus 로고    scopus 로고
    • Habitat preference and the marine-speciation paradox
    • Bierne N, Bonhomme F, David P (2003). Habitat preference and the marine-speciation paradox. Proc R Soc Lond B Biol Sci 270: 1399-1406.
    • (2003) Proc R Soc Lond B Biol Sci , vol.270 , pp. 1399-1406
    • Bierne, N.1    Bonhomme, F.2    David, P.3
  • 5
    • 37749020514 scopus 로고    scopus 로고
    • Sympatric speciation: Models and empirical evidence
    • Bolnick DI, Fitzpatrick BM (2007). Sympatric speciation: models and empirical evidence. Annu Rev Ecol Evol Syst 38: 459-487.
    • (2007) Annu Rev Ecol Evol Syst , vol.38 , pp. 459-487
    • Bolnick, D.I.1    Fitzpatrick, B.M.2
  • 6
    • 47649097691 scopus 로고    scopus 로고
    • Eastern temperate North Pacific offshore killer whales (Orcinus orca): Occurrence, movements, and insights into feeding ecology
    • Dahlheim ME, Schulman-Janiger A, Black N, Ternullo R, Ellifrit D, Balcomb Iii KC (2008). Eastern temperate North Pacific offshore killer whales (Orcinus orca): occurrence, movements, and insights into feeding ecology. Mar Mammal Sci 24: 719-729.
    • (2008) Mar Mammal Sci , vol.24 , pp. 719-729
    • Dahlheim, M.E.1    Schulman-Janiger, A.2    Black, N.3    Ternullo, R.4    Ellifrit, D.5    Balcomb, K.C.6
  • 8
    • 84871770283 scopus 로고    scopus 로고
    • Killer whale ecotypes: Is there a global model?
    • de Bruyn PJN, Tosh CA, Terauds A (2013). Killer whale ecotypes: is there a global model? Biol Rev 88: 62-80.
    • (2013) Biol Rev , vol.88 , pp. 62-80
    • De Bruyn, P.J.N.1    Tosh, C.A.2    Terauds, A.3
  • 9
    • 11844250004 scopus 로고    scopus 로고
    • The vocal behaviour of mammal-eating killer whales: Communicating with costly calls
    • Deecke VB, Ford JKB, Slater PJB (2005). The vocal behaviour of mammal-eating killer whales: communicating with costly calls. Anim Behav 69: 395-405.
    • (2005) Anim Behav , vol.69 , pp. 395-405
    • Deecke, V.B.1    Ford, J.K.B.2    Slater, P.J.B.3
  • 10
    • 79955483667 scopus 로고    scopus 로고
    • A framework for variation discovery and genotyping using next-generation DNA sequencing data
    • DePristo MA, Banks E, Poplin R, Garimella KV, Maguire JR, Hartl C et al. (2011). A framework for variation discovery and genotyping using next-generation DNA sequencing data. Nat Genet 43: 491-498.
    • (2011) Nat Genet , vol.43 , pp. 491-498
    • Depristo, M.A.1    Banks, E.2    Poplin, R.3    Garimella, K.V.4    Maguire, J.R.5    Hartl, C.6
  • 11
    • 84855870606 scopus 로고    scopus 로고
    • Relaxed clocks and inferences of heterogeneous patterns of nucleotide substitution and divergence time estimates across whales and dolphins (Mammalia: Cetacea
    • Dornburg A, Brandley MC, McGowen MR, Near TJ (2012). Relaxed clocks and inferences of heterogeneous patterns of nucleotide substitution and divergence time estimates across whales and dolphins (Mammalia: Cetacea). Mol Biol Evol 29: 721-736.
    • (2012) Mol Biol Evol , vol.29 , pp. 721-736
    • Dornburg, A.1    Brandley, M.C.2    McGowen, M.R.3    Near, T.J.4
  • 12
  • 13
    • 84917735497 scopus 로고    scopus 로고
    • An improved dual-indexing approach for multiplexed 16S rRNA gene sequencing on the Illumina MiSeq platform
    • Fadrosh DW, Ma B, Gajer P, Sengamalay N, Ott S, Brotman RM, Ravel J (2014). An improved dual-indexing approach for multiplexed 16S rRNA gene sequencing on the Illumina MiSeq platform. Microbiome 2: 6.
    • (2014) Microbiome , vol.2 , pp. 6
    • Fadrosh, D.W.1    Ma, B.2    Gajer, P.3    Sengamalay, N.4    Ott, S.5    Brotman, R.M.6    Ravel, J.7
  • 14
    • 80052954268 scopus 로고    scopus 로고
    • Out of the Pacific and back again: Insights into the matrilineal history of Pacific killer whale ecotypes
    • Foote AD, Morin PA, Durban JW, Willerslev E, Orlando L, Gilbert MTP (2011a). Out of the Pacific and back again: insights into the matrilineal history of Pacific killer whale ecotypes. PLoS One 6: e24980.
    • (2011) PLoS One , vol.6 , pp. e24980
    • Foote, A.D.1    Morin, P.A.2    Durban, J.W.3    Willerslev, E.4    Orlando, L.5    Gilbert, M.T.P.6
  • 17
    • 71549166081 scopus 로고    scopus 로고
    • Ecological, morphological and genetic divergence of sympatric North Atlantic killer whale populations
    • Foote AD, Newton J, Piertney SB, Willerslev E, Gilbert MTP (2009). Ecological, morphological and genetic divergence of sympatric North Atlantic killer whale populations. Mol Ecol 18: 5207-5217.
    • (2009) Mol Ecol , vol.18 , pp. 5207-5217
    • Foote, A.D.1    Newton, J.2    Piertney, S.B.3    Willerslev, E.4    Gilbert, M.T.P.5
  • 19
    • 0032447965 scopus 로고    scopus 로고
    • Dietary specialization in two sympatric populations of killer whales (Orcinus orca) in coastal British Columbia and adjacent waters
    • Ford JKB, Ellis GM, Barrett-Lennard LG, Morton AB, Palm RS, Balcomb KC III (1998). Dietary specialization in two sympatric populations of killer whales (Orcinus orca) in coastal British Columbia and adjacent waters. Can J Zool 76: 1456-1471.
    • (1998) Can J Zool , vol.76 , pp. 1456-1471
    • Ford, J.K.B.1    Ellis, G.M.2    Barrett-Lennard, L.G.3    Morton, A.B.4    Palm, R.S.5    Balcomb, K.C.6
  • 20
    • 0346223060 scopus 로고    scopus 로고
    • Contribution of Southern Ocean surface-water stratification to low atmospheric CO2 concentrations during the last glacial period
    • Francois R, Altabet MA, Yu E-F, Sigman DM, Bacon MP, Frank M et al. (1997). Contribution of Southern Ocean surface-water stratification to low atmospheric CO2 concentrations during the last glacial period. Nature 389: 929-935.
    • (1997) Nature , vol.389 , pp. 929-935
    • Francois, R.1    Altabet, M.A.2    Yu, E.-F.3    Sigman, D.M.4    Bacon, M.P.5    Frank, M.6
  • 22
    • 74549125386 scopus 로고    scopus 로고
    • SeaView Version 4: A Multiplatform graphical user interface for sequence alignment and phylogenetic tree building
    • Gouy M, Guindon S, Gascuel O (2009). SeaView Version 4: a Multiplatform graphical user interface for sequence alignment and phylogenetic tree building. Mol Biol Evol 27: 221-224.
    • (2009) Mol Biol Evol , vol.27 , pp. 221-224
    • Gouy, M.1    Guindon, S.2    Gascuel, O.3
  • 23
    • 38449100326 scopus 로고    scopus 로고
    • Elevated substitution rates estimated from ancient DNA sequences
    • Ho SYW, Kolokotronis SO, Allaby RG (2007). Elevated substitution rates estimated from ancient DNA sequences. Biol Lett 3: 702-705.
    • (2007) Biol Lett , vol.3 , pp. 702-705
    • Ho, S.Y.W.1    Kolokotronis, S.O.2    Allaby, R.G.3
  • 24
    • 70349869190 scopus 로고    scopus 로고
    • Evolution of population structure in marine mammals
    • Bertorelle G, Bruford MW, Hauffe HC, Rizzoli A, Vernesi C (eds) . Cambridge University Press: Cambridge, UK
    • Hoelzel AR (2009). Evolution of population structure in marine mammals. In: Bertorelle G, Bruford MW, Hauffe HC, Rizzoli A, Vernesi C (eds) Population Genetics for Animal Conservation. Cambridge University Press: Cambridge, UK.
    • (2009) Population Genetics for Animal Conservation
    • Hoelzel, A.R.1
  • 25
    • 0031979721 scopus 로고    scopus 로고
    • Low genetic variation among killer whales (Orcinus orca) in the Eastern North Pacific and genetic differentiation between foraging specialists
    • Hoelzel AR, Dahlheim M, Stern SJ (1998). Low genetic variation among killer whales (Orcinus orca) in the Eastern North Pacific and genetic differentiation between foraging specialists. J Hered 89: 121-128.
    • (1998) J Hered , vol.89 , pp. 121-128
    • Hoelzel, A.R.1    Dahlheim, M.2    Stern, S.J.3
  • 28
    • 32044457405 scopus 로고    scopus 로고
    • A Northeast Pacific offshore killer whale (Orcinus orca) feeding on a pacific halibut (Hippoglossus stenolepis)
    • Jones IM (2006). A Northeast Pacific offshore killer whale (Orcinus orca) feeding on a pacific halibut (Hippoglossus stenolepis). Mar Mammal Sci 22: 198-200.
    • (2006) Mar Mammal Sci , vol.22 , pp. 198-200
    • Jones, I.M.1
  • 29
  • 30
    • 2442691520 scopus 로고    scopus 로고
    • A Bayesian mixture model for across-site heterogeneities in the amino-acid replacement process
    • Lartillot N, Philippe H (2004). A Bayesian mixture model for across-site heterogeneities in the amino-acid replacement process. Mol Biol Evol 21: 1095-1109.
    • (2004) Mol Biol Evol , vol.21 , pp. 1095-1109
    • Lartillot, N.1    Philippe, H.2
  • 31
    • 69949126557 scopus 로고    scopus 로고
    • PhyloBayes 3: A Bayesian software package for phylogenetic reconstruction and molecular dating
    • Lartillot N, Lepage T, Blanquart S (2009). PhyloBayes 3: a Bayesian software package for phylogenetic reconstruction and molecular dating. Bioinformatics 25: 2286-2288.
    • (2009) Bioinformatics , vol.25 , pp. 2286-2288
    • Lartillot, N.1    Lepage, T.2    Blanquart, S.3
  • 32
    • 0035711568 scopus 로고    scopus 로고
    • Terrigenous input and paleoproductivity in the Southern Ocean
    • Latimer JC, Filippelli GM (2001). Terrigenous input and paleoproductivity in the Southern Ocean. Paleoceanography 16: 627-643.
    • (2001) Paleoceanography , vol.16 , pp. 627-643
    • Latimer, J.C.1    Filippelli, G.M.2
  • 33
    • 67649884743 scopus 로고    scopus 로고
    • Fast and accurate short read alignment with Burrows-Wheeler transform
    • Li H, Durbin R (2009). Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics 25: 1754-1760.
    • (2009) Bioinformatics , vol.25 , pp. 1754-1760
    • Li, H.1    Durbin, R.2
  • 34
    • 77956295988 scopus 로고    scopus 로고
    • The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data
    • McKenna A, Hanna M, Banks E, Sivachenko A, Cibulskis K, Kernytsky A et al. (2010). The Genome Analysis Toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data. Genome Res 20: 1297-1303.
    • (2010) Genome Res , vol.20 , pp. 1297-1303
    • McKenna, A.1    Hanna, M.2    Banks, E.3    Sivachenko, A.4    Cibulskis, K.5    Kernytsky, A.6
  • 35
    • 58049218990 scopus 로고    scopus 로고
    • TOPALi v2: A rich graphical interface for evolutionary analyses of multiple alignments on HPC clusters and multi-core desktops
    • Milne I, Lindner D, Bayer M, Husmeier D, McGuire G, Marshall DF et al. (2009). TOPALi v2: a rich graphical interface for evolutionary analyses of multiple alignments on HPC clusters and multi-core desktops. Bioinformatics 25: 126-127.
    • (2009) Bioinformatics , vol.25 , pp. 126-127
    • Milne, I.1    Lindner, D.2    Bayer, M.3    Husmeier, D.4    McGuire, G.5    Marshall, D.F.6
  • 36
    • 77954236362 scopus 로고    scopus 로고
    • Complete mitochondrial genome phylogeographic analysis of killer whales (Orcinus orca) indicates multiple species
    • Morin PA, Archer FI, Foote AD, Vilstrup J, Allen EE, Wade P et al. (2010). Complete mitochondrial genome phylogeographic analysis of killer whales (Orcinus orca) indicates multiple species. Genome Res 20: 908-916.
    • (2010) Genome Res , vol.20 , pp. 908-916
    • Morin, P.A.1    Archer, F.I.2    Foote, A.D.3    Vilstrup, J.4    Allen, E.E.5    Wade, P.6
  • 37
    • 84899534182 scopus 로고    scopus 로고
    • Killer whale nuclear genome and mtDNA reveals widespread population bottleneck during the last glacial maximum
    • Moura AE, Janse van Rensburg C, Pilot M, Tehrani A, Best PB, Thornton M et al. (2014). Killer whale nuclear genome and mtDNA reveals widespread population bottleneck during the last glacial maximum. Mol Biol Evol 31: 1121-1131.
    • (2014) Mol Biol Evol , vol.31 , pp. 1121-1131
    • Moura, A.E.1    Janse Van Rensburg, C.2    Pilot, M.3    Tehrani, A.4    Best, P.B.5    Thornton, M.6
  • 38
    • 84886073051 scopus 로고    scopus 로고
    • Recent diversification of a marine genus (Tursiops spp.) tracks habitat preference and environmental change
    • Moura AE, Nielsen SCA, Vilstrup JT, Moreno-Mayar JV, Gilbert MTP, Gray H et al. (2013). Recent diversification of a marine genus (Tursiops spp.) tracks habitat preference and environmental change. Syst Biol 62: 865-877.
    • (2013) Syst Biol , vol.62 , pp. 865-877
    • Moura, A.E.1    Nielsen, S.C.A.2    Vilstrup, J.T.3    Moreno-Mayar, J.V.4    Gilbert, M.T.P.5    Gray, H.6
  • 39
    • 24044458933 scopus 로고    scopus 로고
    • Habitat structure and the dispersal of male and female bottlenose dolphins (Tursiops truncatus
    • Natoli A, Birkun A, Aguilar A, Lopez A, Hoelzel AR (2005). Habitat structure and the dispersal of male and female bottlenose dolphins (Tursiops truncatus). Proc R Soc Lond B Biol Sci 272: 1217-1226.
    • (2005) Proc R Soc Lond B Biol Sci , vol.272 , pp. 1217-1226
    • Natoli, A.1    Birkun, A.2    Aguilar, A.3    Lopez, A.4    Hoelzel, A.R.5
  • 40
    • 84938514729 scopus 로고    scopus 로고
    • Oxford, University Press, Oxford, UK
    • Nosil P (2012). Ecological Speciation. Oxford University Press: Oxford, UK, pp 304.
    • (2012) Ecological Speciation , pp. 304
    • Nosil, P.1
  • 41
    • 0028164409 scopus 로고
    • Genetic divergence, reproductive isolation, and marine speciation
    • Palumbi SR (1994). Genetic divergence, reproductive isolation, and marine speciation. Annu Rev Ecol Syst 25: 547-572.
    • (1994) Annu Rev Ecol Syst , vol.25 , pp. 547-572
    • Palumbi, S.R.1
  • 42
    • 84886232707 scopus 로고    scopus 로고
    • Geographic patterns of genetic differentiation among killer whales in the northern North Pacific
    • Parsons KM, Durban JW, Burdin AM, Burkanov VN, Pitman RL, Barlow J et al. (2013). Geographic patterns of genetic differentiation among killer whales in the northern North Pacific. J Hered 104: 737-754.
    • (2013) J Hered , vol.104 , pp. 737-754
    • Parsons, K.M.1    Durban, J.W.2    Burdin, A.M.3    Burkanov, V.N.4    Pitman, R.L.5    Barlow, J.6
  • 43
    • 72449144244 scopus 로고    scopus 로고
    • Social cohesion among kin, gene flow without dispersal and the evolution of population genetic structure in the killer whale (Orcinus orca
    • Pilot M, Dahlheim ME, Hoelzel AR (2010). Social cohesion among kin, gene flow without dispersal and the evolution of population genetic structure in the killer whale (Orcinus orca). J Evol Biol 23: 20-31.
    • (2010) J Evol Biol , vol.23 , pp. 20-31
    • Pilot, M.1    Dahlheim, M.E.2    Hoelzel, A.R.3
  • 44
    • 9644277857 scopus 로고    scopus 로고
    • Three forms of killer whales in Antarctic waters
    • Pitman RL, Ensor P (2003). Three forms of killer whales in Antarctic waters. J Cetacean Res Manage 5: 131-139.
    • (2003) J Cetacean Res Manage , vol.5 , pp. 131-139
    • Pitman, R.L.1    Ensor, P.2
  • 45
    • 80051949959 scopus 로고    scopus 로고
    • Abundance estimates of killer whales at -subantarctic Marion Island
    • Reisinger RR, de Bruyn PJN, Bester MN (2011). Abundance estimates of killer whales at -subantarctic Marion Island. Aquatic Biol 12: 177-185.
    • (2011) Aquatic Biol , vol.12 , pp. 177-185
    • Reisinger, R.R.1    De Bruyn, P.J.N.2    Bester, M.N.3
  • 46
    • 84859345902 scopus 로고    scopus 로고
    • Cultural traditions and the evolution of reproductive isolation ecological speciation in killer whales?
    • Riesch R, Barrett-Lennard LG, Ellis GM, Ford JKB, Deeke VB (2012). Cultural traditions and the evolution of reproductive isolation: ecological speciation in killer whales? Biol J Linn Soc 106: 1-17.
    • (2012) Biol J Linn Soc , vol.106 , pp. 1-17
    • Riesch, R.1    Barrett-Lennard, L.G.2    Ellis, G.M.3    Ford, J.K.B.4    Deeke, V.B.5
  • 47
    • 84883229050 scopus 로고    scopus 로고
    • Less is more in mammalian phylogenomics: AT-rich genes minimize tree conflicts and unravel the root of placental mammals
    • Romiguier J, Ranwez V, Delsuc F, Galtier N, Douzery EJP (2013). Less is more in mammalian phylogenomics: AT-rich genes minimize tree conflicts and unravel the root of placental mammals. Mol Biol Evol 30: 2134-2144.
    • (2013) Mol Biol Evol , vol.30 , pp. 2134-2144
    • Romiguier, J.1    Ranwez, V.2    Delsuc, F.3    Galtier, N.4    Ejp, D.5
  • 48
    • 0031476053 scopus 로고    scopus 로고
    • Dispersal-Vicariance analysis: A new approach to the quantification of historical biogeography
    • Ronquist F (1997). Dispersal-Vicariance analysis: a new approach to the quantification of historical biogeography. Syst Biol 46: 195-203.
    • (1997) Syst Biol , vol.46 , pp. 195-203
    • Ronquist, F.1
  • 49
    • 4344648036 scopus 로고    scopus 로고
    • Bayesian inference of character evolution
    • Ronquist F (2004). Bayesian inference of character evolution. Trends Ecol Evol 19: 475-481.
    • (2004) Trends Ecol Evol , vol.19 , pp. 475-481
    • Ronquist, F.1
  • 50
    • 0041386108 scopus 로고    scopus 로고
    • MrBayes 3: Bayesian phylogenetic inference under mixed models
    • Ronquist F, Huelsenbeck JP (2003). MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19: 1572-1574.
    • (2003) Bioinformatics , vol.19 , pp. 1572-1574
    • Ronquist, F.1    Huelsenbeck, J.P.2
  • 53
    • 84872480881 scopus 로고    scopus 로고
    • Genome-wide RAD sequence data provide unprecedented resolution of species boundaries and relationships in Lake Victoria cichlid adaptive radiation
    • Wagner CE, Keller I, Wittwer S, Selz OM, Mwaiko S, Greuter L et al. (2012). Genome-wide RAD sequence data provide unprecedented resolution of species boundaries and relationships in Lake Victoria cichlid adaptive radiation. Mol Ecol 22: 787-798.
    • (2012) Mol Ecol , vol.22 , pp. 787-798
    • Wagner, C.E.1    Keller, I.2    Wittwer, S.3    Selz, O.M.4    Mwaiko, S.5    Greuter, L.6
  • 55
    • 77953130216 scopus 로고    scopus 로고
    • S-DIVA (Statistical Dispersal-Vicariance Analysis): A tool for inferring biogeographic histories
    • Yu Y, Harris AJ, He X (2010). S-DIVA (Statistical Dispersal-Vicariance Analysis): a tool for inferring biogeographic histories. Mol Phylogenet Evol 56: 848-850.
    • (2010) Mol Phylogenet Evol , vol.56 , pp. 848-850
    • Yu, Y.1    Harris, A.J.2    He, X.3
  • 56
    • 0036038169 scopus 로고    scopus 로고
    • Cultural transmission within maternal lineages: Vocal clans in resident killer whales in southern Alaska
    • Yurk H, Barrett-Lennard L, Ford JKB, Matkin CO (2002). Cultural transmission within maternal lineages: vocal clans in resident killer whales in southern Alaska. Anim Behav 63: 1103-1119.
    • (2002) Anim Behav , vol.63 , pp. 1103-1119
    • Yurk, H.1    Barrett-Lennard, L.2    Ford, J.K.B.3    Matkin, C.O.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.