Snapshot of methanogen sensitivity to temperature in Zoige wetland from Tibetan plateau

Frontiers in Microbiology

Volumn 6, Issue FEB, 2015, Pages

  Fu, Li ^a   Song, Tianze ^b,c   Lu, Yahai ^a,c  

^a CHINA AGRICULTURAL UNIVERSITY   (China)

^b FUDAN UNIVERSITY   (China)

^c PEKING UNIVERSITY   (China)

Author keywords

Methanogenesis; Methanogens; Temperature sensitivity; Tibetan plateau; Zoige wetland

Indexed keywords

CARBON; RNA 16S; VOLATILE FATTY ACID;

ARTICLE; BACTERIAL GENE; CHINA; COMMUNITY STRUCTURE; DNA EXTRACTION; MCRA GENE; MESOPHILIC BACTERIUM; METHANOBACTERIALES; METHANOCELLALES; METHANOGEN; METHANOGENESIS; METHANOGENIC BACTERIUM; METHANOMICROBIALES; METHANOSARCINACEAE; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; REAL TIME POLYMERASE CHAIN REACTION; RESTRICTION FRAGMENT LENGTH POLYMORPHISM; RNA GENE; SEQUENCE ANALYSIS; SOIL ANALYSIS; SPECIES COMPOSITION; TEMPERATURE SENSITIVITY; WETLAND;

METHANOBACTERIALES; METHANOMICROBIALES; METHANOSARCINACEAE;

EID: 84927550656     PISSN: None     EISSN: 1664302X     Source Type: Journal    
DOI: 10.3389/fmicb.2015.00131     Document Type: Article

References (51)

1. Bond-Lamberty, B., and Thomson, A. (2010). Temperature-associated increases in the global soil respiration record. Nature 464, 579-582. doi: 10.1038/nature08930.
2. Cai, Y., Lang, H., and Wang, X. (1965). Mires of Zoige Plateau. Beijing: Science Press.
3. Chen, H., Wu, N., Gao, Y., Wang, Y., Luo, P., and Tian, J. (2009a). Spatial variations on methane emissions from Zoige alpine wetlands of southwest China. Sci. Total Environ. 407, 1097-1104. doi: 10.1016/j.scitotenv.2008.10.038.
4. Chen, H., Wu, N., Wang, Y., Zhu, D., Yang, G., Gao, Y., et al. (2013a). Inter-annual variations of methane emission from an open fen on the Qinghai-Tibetan Plateau: a three-year study. PLoS ONE 8:e53878. doi: 10.1371/journal.pone.0053878.
5. Chen, H., Wu, N., Yao, S., Gao, Y., Wang, Y., Tian, J., et al. (2009b). Diurnal variation of methane emissions from an alpine wetland on the eastern edge of Qinghai-Tibetan Plateau. Environ. Monit. Assess. 164, 21-28. doi: 10.1007/s10661-009-0871-3.
6. Chen, H., Zhu, Q. A., Peng, C., Wu, N., Wang, Y., Fang, X., et al. (2013b). Methane emissions from rice paddies natural wetlands, and lakes in China: synthesis and new estimate. Glob. Chang. Biol. 19, 19-32. doi: 10.1111/gcb.12034.
7. Chin, K. J., Lukow, T., and Conrad, R. (1999). Effect of temperature on structure and function of the methanogenic archaeal community in an anoxic rice field soil. Appl. Environ. Microbiol. 65, 2341-2349.
8. Conrad, R. (1999). Contribution of hydrogen to methane production and control of hydrogen concentrations in methanogenic soils and sediments. FEMS Microbiol. Ecol. 28, 193-202. doi: 10.1111/j.1574-6941.1999.tb00575.x.
9. Conrad, R. (2009). The global methane cycle: recent advances in understanding the microbial processes involved. Environ. Microbiol. Rep. 1, 285-292. doi: 10.1111/j.1758-2229.2009.00038.x.
10. Conrad, R., Klose, M., and Noll, M. (2009). Functional and structural response of the methanogenic microbial community in rice field soil to temperature change. Environ. Microbiol. 11, 1844-1853. doi: 10.1111/j.1462-2920.2009.01909.x.
11. Davidson, E. A., and Janssens, I. A. (2006). Temperature sensitivity of soil carbon decomposition and feedbacks to climate change. Nature 440, 165-173. doi: 10.1038/nature04514.
12. Fey, A., and Conrad, R. (2000). Effect of temperature on carbon and electron flow and on the archaeal community in methanogenic rice field soil. Appl. Environ. Microbiol. 66, 4790-4797. doi: 10.1128/AEM.66.11.4790-4797.2000.
13. Galand, P. E., Fritze, H., Conrad, R., and Yrjala, K. (2005). Pathways for methanogenesis and diversity of methanogenic archaea in three boreal peatland ecosystems. Appl. Environ. Microbiol. 71, 2195-2198. doi: 10.1128/AEM.71.4.2195-2198.2005.
14. Galand, P. E., Fritze, H., and Yrjala, K. (2003). Microsite-dependent changes in methanogenic populations in a boreal oligotrophic fen. Environ. Microbiol. 5, 1133-1143. doi: 10.1046/j.1462-2920.2003.00520.x.
15. Galand, P. E., Saarnio, S., Fritze, H., and Yrjala, K. (2002). Depth related diversity of methanogen archaea in Finnish oligotrophic fen. FEMS Microbiol. Ecol. 42, 441-449. doi: 10.1111/j.1574-6941.2002.tb01033.x.
16. Glissmann, K., Chin, K. J., Casper, P., and Conrad, R. (2004). Methanogenic pathway and archaeal community structure in the sediment of eutrophic Lake Dagow: effect of temperature. Microb. Ecol. 48, 389-399. doi: 10.1007/s00248-003-2027-2.
17. Godin, A., Mclaughlin, J. W., Webster, K. L., Packalen, M., and Basiliko, N. (2012). Methane and methanogen community dynamics across a boreal peatland nutrient gradient. Soil Biol. Biochem. 48, 96-105. doi: 10.1016/j.soilbio.2012.01.018.
18. Good, I. J. (1953). The population frequencies of species and the estimation of population parameters. Biometrika 40, 237-264. doi: 10.1093/biomet/40.3-4.237.
19. Hartley, I. P., Armstrong, A. F., Murthyw, R., Barron-Gafford, G., Ineson, P., and Atkin, O. K. (2006). The dependence of respiration on photosynthetic substrate supply and temperature: integrating leaf, soil and ecosystem measurements. Glob. Chang. Biol. 12, 1954-1968. doi: 10.1111/j.1365-2486.2006.01214.x.
20. He, G., Li, K., Liu, X., Gong, Y., and Hu, Y. (2014). Fluxes of methane, carbon dioxide and nitrous oxide in an alpine wetland and an alpine grassland of the Tianshan Mountains, China. J. Arid Land 6, 717-724. doi: 10.1007/s, 40333-014-0070-0.
21. Høj, L., Olsen, R. A., and Torsvik, V. L. (2008). Effects of temperature on the diversity and community structure of known methanogenic groups and other archaea in high Arctic peat. ISME J. 2, 37-48. doi: 10.1038/ismej.2007.84.
22. IPCC: Climate Change. (2014). Mitigation of Climate Change. Working Group III Contribution to the IPCC Fifth Assessment Report. Avaliable online at: http://www.mitigation2014.org.
23. Juottonen, H., Tuittila, E.-S., Juutinen, S., Fritze, H., and Yrjala, K. (2008). Seasonality of rDNA-and rRNA-derived archaeal communities and methanogenic potential in a boreal mire. ISME J. 2, 1157-1168. doi: 10.1038/ismej.2008.66.
24. Kanta Gaihre, Y., Wassmann, R., Tirol-Padre, A., Villegas-Pangga, G., Aquino, E., and Kimball, B. A. (2014). Seasonal assessment of greenhouse gas emissions from irrigated lowland rice fields under infrared warming. Agric. Ecosyst. Environ. 184, 88-100. doi: 10.1016/j.agee.2013.11.024.
25. Karhu, K., Auffret, M. D., Dungait, J. A. J., Hopkins, D. W., Prosser, J. I., Singh, B. K., et al. (2014). Temperature sensitivity of soil respiration rates enhanced by microbial community response. Nature 513, 81-84. doi: 10.1038/nature13604.
26. Kirschke, S., Bousquet, P., Ciais, P., Saunois, M., Canadell, J. G., Dlugokencky, E. J., et al. (2013). Three decades of global methane sources and sinks. Nat. Geosci. 6, 813-823. doi: 10.1038/ngeo1955.
27. Liu, D. Y., Ding, W. X., Jia, Z. J., and Cai, Z. C. (2011). Relation between methanogenic archaea and methane production potential in selected natural wetland ecosystems across China. Biogeosciences 8, 329-338. doi: 10.5194/bg-8-329-2011.
28. Lueders, T., and Friedrich, M. (2000). Archaeal population dynamics during sequential reduction processes in rice field soil. Appl. Environ. Microbiol. 66, 2732-2742. doi: 10.1128/AEM.66.7.2732-2742.2000.
29. Lueders, T., Manefield, M., and Friedrich, M. W. (2004). Enhanced sensitivity of DNA-and rRNA-based stable isotope probing by fractionation and quantitative analysis of isopycnic centrifugation gradients. Environ. Microbiol. 6, 73-78. doi: 10.1046/j.1462-2920.2003.00536.x.
30. Ma, K., Conrad, R., and Lu, Y. H. (2012). Responses of methanogen mcrA genes and their transcripts to an alternate dry/wet cycle of paddy field soil. Appl. Environ. Microbiol. 78, 445-454. doi: 10.1128/AEM.06934-11.
31. Macdonald, J. A., Fowler, D., Hargreaves, K. J., Skiba, U., Leith, I. D., and Murray, M. B. (1998). Methane emission rates from a northern wetland; response to temperature, water table and transport. Atmos. Environ. 32, 3219-3227. doi: 10.1016/S1352-2310(97)00464-0.
32. Mahecha, M. D., Reichstein, M., Carvalhais, N., Lasslop, G., Lange, H., Seneviratne, S. I., et al. (2010). Global convergence in the temperature sensitivity of respiration at ecosystem level. Science 329, 838-840. doi: 10.1126/science.1189587.
33. Noll, M., Matthies, D., Frenzel, P., Derakshani, M., and Liesack, W. (2005). Succession of bacterial community structure and diversity in a paddy soil oxygen gradient. Environ. Microbiol. 7, 382-395. doi: 10.1111/j.1462-2920.2005.00700.x.
34. Peng, J., Lu, Z., Rui, J., and Lu, Y. (2008). Dynamics of the methanogenic archaeal community during plant residue decomposition in an anoxic rice field soil. Appl. Environ. Microbiol. 74, 2894-2901. doi: 10.1128/AEM.00070-08.
35. Rui, J., Peng, J., and Lu, Y. (2009). Succession of bacterial populations during plant residue decomposition in rice field soil. Appl. Environ. Microbiol. 75, 4879-4886. doi: 10.1128/AEM.00702-09.
36. Rui, J., Qiu, Q., and Lu, Y. (2011). Syntrophic acetate oxidation under thermophilic methanogenic condition in Chinese paddy field soil. FEMS Microbiol. Ecol. 77, 264-273. doi: 10.1111/j.1574-6941.2011.01104.x.
37. 4 flux upscaling. Environ. Res. Lette. 9. doi: 10.1088/1748-9326/9/4/045008.
38. Schloss, P. D., and Handelsman, J. (2005). Introducing DOTUR, a computer program for defining operational taxonomic units and estimating species richness. Appl. Environ. Microbiol. 71, 1501-1506. doi: 10.1128/AEM.71.3.1501-1506.2005.
39. Steinberg, L. M., and Regan, J. M. (2008). Phylogenetic comparison of the methanogenic communities from an acidic, oligotrophic fen and an anaerobic digester treating municipal wastewater sludge. Appl. Environ. Microbiol. 74, 6663-6671. doi: 10.1128/AEM.00553-08.
40. Tian, J., Chen, H., Dong, X., and Wang, Y. (2012a). Relationship between archaeal community structure and vegetation type in a fen on the Qinghai-Tibetan Plateau. Biol. Fertil. Soils 48, 349-356. doi: 10.1007/s00374-011-0597-6.
41. Tian, J., Zhu, Y., Kang, X., Dong, X., Li, W., Chen, H., et al. (2012b). Effects of drought on the archaeal community in soil of the Zoige wetlands of the Qinghai-Tibetan plateau. Eur. J. Soil Biol. 52, 84-90. doi: 10.1016/j.ejsobi.2012.07.003.
42. Van Hulzen, J. B., Segers, R., Van Bodegom, P. M., and Leffelaar, P. A. (1999). Temperature effects on soil methane production: an explanation for observed variability. Soil Biol. Biochem. 31, 1919-1929. doi: 10.1016/S0038-0717(99)00109-1.
43. 2O fluxes at an alpine steppe site on the central Tibetan Plateau and their responses to simulated N deposition. Geoderma 232, 88-96. doi: 10.1016/j.geoderma.2014.05.002.
44. 4 emissions from the Zoige peatland in China. Soil Biol. Biochem. 78, 83-89. doi: 10.1016/j.soilbio.2014.07.013.
45. 4 production and oxidation processes in a boreal fen ecosystem after long-term water table drawdown. Glob. Chang. Biol. 17, 1311-1320. doi: 10.1111/j.1365-2486.2010.02290.x.
46. Yuan, Q., and Lu, Y. (2009). Response of methanogenic archaeal community to nitrate addition in rice field soil. Environ. Microbiol. Rep. 1, 362-369. doi: 10.1111/j.1758-2229.2009.00065.x.
47. Yvon-Durocher, G., Allen, A. P., Bastviken, D., Conrad, R., Gudasz, C., St-Pierre, A., et al. (2014). Methane fluxes show consistent temperature dependence across microbial to ecosystem scales. Nature 507, 488-491. doi: 10.1038/nature13164.
48. Yvon-Durocher, G., Caffrey, J. M., Cescatti, A., Dossena, M., Del Giorgio, P., Gasol, J. M., et al. (2012). Reconciling the temperature dependence of respiration across timescales and ecosystem types. Nature 487, 472-476. doi: 10.1038/nature11205.
49. Zhang, G., Jiang, N., Liu, X., and Dong, X. (2008a). Methanogenesis from methanol at low temperatures by a novel psychrophilic methanogen, "Methanolobus psychrophilus" sp nov., prevalent in Zoige wetland of the Tibetan plateau. Appl. Environ. Microbiol. 74, 6114-6120. doi: 10.1128/AEM.01146-08.
50. Zhang, G., Tian, J., Jiang, N., Guo, X., Wang, Y., and Dong, X. (2008b). Methanogen community in Zoige wetland of Tibetan plateau and phenotypic characterization of a dominant uncultured methanogen cluster ZC-I. Environ. Microbiol. 10, 1850-1860. doi: 10.1111/j.1462-2920.2008.01606.x.
51. Zou, D., and Gao, K. (2013). Thermal acclimation of respiration and photosynthesis in the marine macroalga Gracilaria lemaneiformis (Gracilariales, Rhodophyta). J. Phycol. 49, 61-68. doi: 10.1111/jpy.12009.