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Volumn 96, Issue 7, 2015, Pages 1985-1993

Microbial functional diversity enhances predictive models linking environmental parameters to ecosystem properties

Author keywords

Denitrification; Ecosystem services; Functional diversity; Model selection; Multimodel inference; Nitrogen cycling

Indexed keywords

ABUNDANCE; AGRICULTURAL LAND; AGRICULTURAL PRODUCTION; AKAIKE INFORMATION CRITERION; BIOGEOCHEMICAL CYCLE; DENITRIFICATION; ECOLOGICAL MODELING; ECOSYSTEM FUNCTION; ECOSYSTEM HEALTH; MICROBIAL COMMUNITY; NITRATE; NITROGEN CYCLE; PARAMETERIZATION; SOIL MICROORGANISM; SPECIES DIVERSITY;

EID: 84927533560     PISSN: 00129658     EISSN: None     Source Type: Journal    
DOI: 10.1890/14-1127.1     Document Type: Article
Times cited : (63)

References (56)
  • 1
    • 84864013176 scopus 로고    scopus 로고
    • A trait-based approach for modelling microbial litter decomposition
    • Allison, S. D. 2012. A trait-based approach for modelling microbial litter decomposition. Ecology Letters 15:1058-1070.
    • (2012) Ecology Letters , vol.15 , pp. 1058-1070
    • Allison, S.D.1
  • 2
    • 0029474101 scopus 로고
    • A hierarchical approach to evaluating the significance of soil biodiversity to biogeo-chemical cycling
    • H. P. Collins, G. P. Robertson, and M. J. Klug, editors, Springer Netherlands, Dordrecht, The Netherlands
    • Beare, M. H., D. C. Coleman, D. A. Crossley, Jr., P. F. Hendrix, and E. P. Odum. 1995. A hierarchical approach to evaluating the significance of soil biodiversity to biogeo-chemical cycling. Pages 5-22 in H. P. Collins, G. P. Robertson, and M. J. Klug, editors. The significance and regulation of soil biodiversity. Springer Netherlands, Dordrecht, The Netherlands.
    • (1995) The Significance and Regulation of Soil Biodiversity , pp. 5-22
    • Beare, M.H.1    Coleman, D.C.2    Crossley, D.A.3    Hendrix, P.F.4    Odum, E.P.5
  • 3
    • 24144447031 scopus 로고    scopus 로고
    • The contribution of species richness and composition to bacterial services
    • Bell, T., J. A. Newman, B. W. Silverman, S. L. Turner, and A. K. Lilley. 2005. The contribution of species richness and composition to bacterial services. Nature 436:1157-1160.
    • (2005) Nature , vol.436 , pp. 1157-1160
    • Bell, T.1    Newman, J.A.2    Silverman, B.W.3    Turner, S.L.4    Lilley, A.K.5
  • 4
    • 0030821424 scopus 로고    scopus 로고
    • Incorporating the soil community into plant population dynamics: The utility of the feedback approach
    • Bever, J. D., K. M. Westover, and J. Antonovics. 1997. Incorporating the soil community into plant population dynamics: the utility of the feedback approach. Journal of Ecology 85:561-573.
    • (1997) Journal of Ecology , vol.85 , pp. 561-573
    • Bever, J.D.1    Westover, K.M.2    Antonovics, J.3
  • 6
    • 34447129589 scopus 로고    scopus 로고
    • Seasonal and diel distributions of denitrifying and bacterial communities in a hypersaline microbial mat (Camargue, France)
    • Desnues, C., V. D. Michotey, A. Wieland, C. Zhizang, A. Fourcans, R. Duran, and P. C. Bonin. 2007. Seasonal and diel distributions of denitrifying and bacterial communities in a hypersaline microbial mat (Camargue, France). Water Research 41:3407-3419.
    • (2007) Water Research , vol.41 , pp. 3407-3419
    • Desnues, C.1    Michotey, V.D.2    Wieland, A.3    Zhizang, C.4    Fourcans, A.5    Duran, R.6    Bonin, P.C.7
  • 8
    • 34248524104 scopus 로고    scopus 로고
    • Using terminal restriction fragment length polymorphism (T-RFLP) to identify mycorrhizal fungi: A methods review
    • Dickie, I. A., and R. G. FitzJohn. 2007. Using terminal restriction fragment length polymorphism (T-RFLP) to identify mycorrhizal fungi: a methods review. Mycorrhiza 17:259-270.
    • (2007) Mycorrhiza , vol.17 , pp. 259-270
    • Dickie, I.A.1    FitzJohn, R.G.2
  • 9
    • 84855446161 scopus 로고    scopus 로고
    • Do assembly history effects attenuate from species to ecosystem properties? A field test with wood-inhabiting fungi
    • Dickie, I. A., T. Fukami, J. P. Wilkie, R. B. Allen, and P. K. Buchanan. 2012. Do assembly history effects attenuate from species to ecosystem properties? A field test with wood-inhabiting fungi. Ecology Letters 15:133-141.
    • (2012) Ecology Letters , vol.15 , pp. 133-141
    • Dickie, I.A.1    Fukami, T.2    Wilkie, J.P.3    Allen, R.B.4    Buchanan, P.K.5
  • 10
    • 77952975677 scopus 로고    scopus 로고
    • Influence of evenness on the litter-species richness-decomposition relationship in Mediterranean grasslands
    • Dimitrakopoulos, P. G. 2010. Influence of evenness on the litter-species richness-decomposition relationship in Mediterranean grasslands. Journal of Plant Ecology 3:71-78.
    • (2010) Journal of Plant Ecology , vol.3 , pp. 71-78
    • Dimitrakopoulos, P.G.1
  • 11
    • 29144511306 scopus 로고    scopus 로고
    • Activity and composition of the denitrifying bacterial community respond differently to long-term fertilization
    • Enwall, K., L. Philippot, and S. Hallin. 2005. Activity and composition of the denitrifying bacterial community respond differently to long-term fertilization. Applied and Environmental Microbiology 71:8335-8343.
    • (2005) Applied and Environmental Microbiology , vol.71 , pp. 8335-8343
    • Enwall, K.1    Philippot, L.2    Hallin, S.3
  • 12
    • 77950263969 scopus 로고    scopus 로고
    • Soil resources influence spatial patterns of denitrifying communities at scales compatible with land management
    • Enwall, K., I. N. Throback, M. Stenberg, M. Soderstrom, and S. Hallin. 2010. Soil resources influence spatial patterns of denitrifying communities at scales compatible with land management. Applied and Environmental Microbiology 76:2243-2250.
    • (2010) Applied and Environmental Microbiology , vol.76 , pp. 2243-2250
    • Enwall, K.1    Throback, I.N.2    Stenberg, M.3    Soderstrom, M.4    Hallin, S.5
  • 14
    • 0032724937 scopus 로고    scopus 로고
    • Dilution/extinction of community phenotypic characters to estimate relative structural diversity in mixed communities
    • Garland, J. L., and R. M. Lehman. 1999. Dilution/extinction of community phenotypic characters to estimate relative structural diversity in mixed communities. FEMS Microbiology Ecology 30:333-343.
    • (1999) FEMS Microbiology Ecology , vol.30 , pp. 333-343
    • Garland, J.L.1    Lehman, R.M.2
  • 15
    • 84856887615 scopus 로고    scopus 로고
    • Randomization tests for quantifying species importance to ecosystem function
    • Gotelli, N. J., W. Ulrich, and F. T. Maestre. 2011. Randomization tests for quantifying species importance to ecosystem function. Methods in Ecology and Evolution 2:634-642.
    • (2011) Methods in Ecology and Evolution , vol.2 , pp. 634-642
    • Gotelli, N.J.1    Ulrich, W.2    Maestre, F.T.3
  • 16
    • 84914680332 scopus 로고    scopus 로고
    • Intergenomic comparisons highlight modularity of the denitrification pathway and underpin the importance of community structure for N2O emissions
    • Graf, D., C. M. Jones, and S. Hallin. 2014. Intergenomic comparisons highlight modularity of the denitrification pathway and underpin the importance of community structure for N2O emissions. PLoS ONE 9(12):e114118.
    • (2014) PLoS ONE , vol.9 , Issue.12 , pp. e114118
    • Graf, D.1    Jones, C.M.2    Hallin, S.3
  • 18
    • 0032425501 scopus 로고    scopus 로고
    • Benefits of plant diversity to ecosystems: Immediate, filter and founder effects
    • Grime, J. P. 1998. Benefits of plant diversity to ecosystems: immediate, filter and founder effects. Journal of Ecology 86:902-910.
    • (1998) Journal of Ecology , vol.86 , pp. 902-910
    • Grime, J.P.1
  • 19
    • 84871404209 scopus 로고    scopus 로고
    • Soil functional operating range linked to microbial biodiversity and community composition using denitrifiers as model guild
    • Hallin, S., A. Welsh, J. Stenstrom, S. Hallet, K. Enwall, D. Bru, and L. Philippot. 2012. Soil functional operating range linked to microbial biodiversity and community composition using denitrifiers as model guild. PLoS ONE 7:e51962.
    • (2012) PLoS ONE , vol.7 , pp. e51962
    • Hallin, S.1    Welsh, A.2    Stenstrom, J.3    Hallet, S.4    Enwall, K.5    Bru, D.6    Philippot, L.7
  • 20
    • 70349119250 scopus 로고
    • Regression and time series model selection in small samples
    • Hurvich, C. M., and C.-L. Tsai. 1989. Regression and time series model selection in small samples. Biometrika 76:297-307.
    • (1989) Biometrika , vol.76 , pp. 297-307
    • Hurvich, C.M.1    Tsai, C.-L.2
  • 21
    • 80052588395 scopus 로고    scopus 로고
    • High plant diversity is needed to maintain ecosystem services
    • Isbell, F., et al. 2011. High plant diversity is needed to maintain ecosystem services. Nature 477:199-202.
    • (2011) Nature , vol.477 , pp. 199-202
    • Isbell, F.1
  • 22
    • 77951498193 scopus 로고    scopus 로고
    • Ecological and evolutionary factors underlying global and local assembly of denitrifier communities
    • Jones, C. M., and S. Hallin. 2010. Ecological and evolutionary factors underlying global and local assembly of denitrifier communities. ISME Journal 4:633-641.
    • (2010) ISME Journal , vol.4 , pp. 633-641
    • Jones, C.M.1    Hallin, S.2
  • 23
    • 84899995051 scopus 로고    scopus 로고
    • Microbial community dynamics alleviate stoichiometric constraints during litter decay
    • Kaiser, C, O. Franklin, U. Dieckmann, and A. Richter. 2014. Microbial community dynamics alleviate stoichiometric constraints during litter decay. Ecology Letters 17:680-690.
    • (2014) Ecology Letters , vol.17 , pp. 680-690
    • Kaiser, C.1    Franklin, O.2    Dieckmann, U.3    Richter, A.4
  • 24
    • 0344629203 scopus 로고    scopus 로고
    • Bias and artifacts in multitemplate polymerase chain reactions (PCR)
    • Kanagawa, T. 2003. Bias and artifacts in multitemplate polymerase chain reactions (PCR). Journal of Bioscience and Bioengineering 96:317-323.
    • (2003) Journal of Bioscience and Bioengineering , vol.96 , pp. 317-323
    • Kanagawa, T.1
  • 26
    • 0021516358 scopus 로고
    • Effect of water-filled pore space on carbon dioxide and nitrous oxide production in tilled and nontilled soils
    • Linn, D. M., and J. W. Doran. 1984. Effect of water-filled pore space on carbon dioxide and nitrous oxide production in tilled and nontilled soils. Soil Science Society of America Journal 48:1267.
    • (1984) Soil Science Society of America Journal , vol.48 , pp. 1267
    • Linn, D.M.1    Doran, J.W.2
  • 27
    • 0035811475 scopus 로고    scopus 로고
    • Partitioning selection and complementarity in biodiversity experiments
    • Loreau, M., and A. Hector. 2001. Partitioning selection and complementarity in biodiversity experiments. Nature 412:72-76.
    • (2001) Nature , vol.412 , pp. 72-76
    • Loreau, M.1    Hector, A.2
  • 28
    • 0035955371 scopus 로고    scopus 로고
    • Biodiversity and ecosystem functioning: Current knowledge and future challenges
    • Loreau, M., et al. 2001. Biodiversity and ecosystem functioning: current knowledge and future challenges. Science 294:804-808.
    • (2001) Science , vol.294 , pp. 804-808
    • Loreau, M.1
  • 29
    • 34250893026 scopus 로고    scopus 로고
    • Influence of phylogeny on fungal community assembly and ecosystem functioning
    • Maherali, H., and J. N. Klironomos. 2007. Influence of phylogeny on fungal community assembly and ecosystem functioning. Science 316:1746-1748.
    • (2007) Science , vol.316 , pp. 1746-1748
    • Maherali, H.1    Klironomos, J.N.2
  • 30
    • 79957595286 scopus 로고    scopus 로고
    • Deciphering the rhizosphere microbiome for disease-suppressive bacteria
    • Mendes, R., et al. 2011. Deciphering the rhizosphere microbiome for disease-suppressive bacteria. Science 332:1097-1100.
    • (2011) Science , vol.332 , pp. 1097-1100
    • Mendes, R.1
  • 33
    • 1142293897 scopus 로고    scopus 로고
    • Rapid decay of diversity-productivity relationships after invasion of experimental plant communities
    • Pfisterer, A. B., J. Joshi, B. Schmid, and M. Fischer. 2004. Rapid decay of diversity-productivity relationships after invasion of experimental plant communities. Basic and Applied Ecology 5:5-14.
    • (2004) Basic and Applied Ecology , vol.5 , pp. 5-14
    • Pfisterer, A.B.1    Joshi, J.2    Schmid, B.3    Fischer, M.4
  • 36
    • 0009752612 scopus 로고
    • The measurement of diversity in different types of biological collections
    • Pielou, E. C. 1966. The measurement of diversity in different types of biological collections. Journal of Theoretical Biology 13:131-144.
    • (1966) Journal of Theoretical Biology , vol.13 , pp. 131-144
    • Pielou, E.C.1
  • 37
    • 84875071123 scopus 로고    scopus 로고
    • A new tool of the trade: Plant-trait based approaches in microbial ecology
    • Powell, J. R., I. C. Anderson, and M. C. Rillig. 2013. A new tool of the trade: plant-trait based approaches in microbial ecology. Plant and Soil 365:35-40.
    • (2013) Plant and Soil , vol.365 , pp. 35-40
    • Powell, J.R.1    Anderson, I.C.2    Rillig, M.C.3
  • 38
    • 84863304598 scopus 로고    scopus 로고
    • R: A language and environment for statistical computing
    • Vienna, Austria
    • R Core Development Team. 2013. R: a language and environment for statistical computing. R Project for Statistical Computing, Vienna, Austria. http://cran. r-project.org/
    • (2013) R Project for Statistical Computing
  • 39
    • 0034791782 scopus 로고    scopus 로고
    • Effects of land-use on the activity and diversity of methane oxidizing bacteria in forest soils
    • Reay, D. S., S. Radajewski, J. C. Murrell, N. McNamara, and D. B. Nedwell. 2001. Effects of land-use on the activity and diversity of methane oxidizing bacteria in forest soils. Soil Biology and Biochemistry 33:1613-1623.
    • (2001) Soil Biology and Biochemistry , vol.33 , pp. 1613-1623
    • Reay, D.S.1    Radajewski, S.2    Murrell, J.C.3    McNamara, N.4    Nedwell, D.B.5
  • 41
    • 66749103178 scopus 로고    scopus 로고
    • Ecological realism and mechanisms by which diversity begets stability
    • Romanuk, T. N., R. J. Vogt, and J. Kolasa. 2009. Ecological realism and mechanisms by which diversity begets stability. Oikos 118:819-828.
    • (2009) Oikos , vol.118 , pp. 819-828
    • Romanuk, T.N.1    Vogt, R.J.2    Kolasa, J.3
  • 42
    • 72949116825 scopus 로고    scopus 로고
    • Community niche predicts the functioning of denitrifying bacterial assemblages
    • Salles, J. F., F. Poly, B. Schmid, and X. L. Roux. 2009. Community niche predicts the functioning of denitrifying bacterial assemblages. Ecology 90:3324-3332.
    • (2009) Ecology , vol.90 , pp. 3324-3332
    • Salles, J.F.1    Poly, F.2    Schmid, B.3    Roux, X.L.4
  • 43
    • 33644949502 scopus 로고    scopus 로고
    • Denitrifier community composition along a nitrate and salinity gradient in a coastal aquifer
    • Santoro, A. E., A. B. Boehm, and C. A. Francis. 2006. Denitrifier community composition along a nitrate and salinity gradient in a coastal aquifer. Applied and Environmental Microbiology 72:2102-2109.
    • (2006) Applied and Environmental Microbiology , vol.72 , pp. 2102-2109
    • Santoro, A.E.1    Boehm, A.B.2    Francis, C.A.3
  • 45
    • 84947402121 scopus 로고
    • Rectangular confidence regions for the means of multivariate normal distributions
    • Šidak, Z. 1967. Rectangular confidence regions for the means of multivariate normal distributions. Journal of the American Statistical Association 62:626-633.
    • (1967) Journal of the American Statistical Association , vol.62 , pp. 626-633
    • Šidak, Z.1
  • 46
    • 52649158799 scopus 로고    scopus 로고
    • Genetic and functional variation in denitrifier populations along a short-term restoration chronosequence
    • Smith, J. M., and A. Ogram. 2008. Genetic and functional variation in denitrifier populations along a short-term restoration chronosequence. Applied and Environmental Microbiology 74:5615-5620.
    • (2008) Applied and Environmental Microbiology , vol.74 , pp. 5615-5620
    • Smith, J.M.1    Ogram, A.2
  • 47
    • 4344685944 scopus 로고    scopus 로고
    • Reassessing PCR primers targeting nirS, nirK and nosZ genes for community surveys of denitrifying bacteria with DGGE
    • Throback, I. N., K. Enwall, A. Jarvis, and S. Hallin. 2004. Reassessing PCR primers targeting nirS, nirK and nosZ genes for community surveys of denitrifying bacteria with DGGE. FEMS Microbiology Ecology 49:401-417.
    • (2004) FEMS Microbiology Ecology , vol.49 , pp. 401-417
    • Throback, I.N.1    Enwall, K.2    Jarvis, A.3    Hallin, S.4
  • 48
    • 0030881030 scopus 로고    scopus 로고
    • The influence of functional diversity and composition on ecosystem processes
    • Tilman, D., J. Knops, D. Wedin, P. Reich, M. Ritchie, and E. Siemann. 1997. The influence of functional diversity and composition on ecosystem processes. Science 277:1300-1302.
    • (1997) Science , vol.277 , pp. 1300-1302
    • Tilman, D.1    Knops, J.2    Wedin, D.3    Reich, P.4    Ritchie, M.5    Siemann, E.6
  • 49
    • 0036270789 scopus 로고    scopus 로고
    • Microbial diversity and function in soil: From genes to ecosystems
    • Torsvik, V., and L. Øvreas. 2002. Microbial diversity and function in soil: from genes to ecosystems. Current Opinion in Microbiology 5:240-245.
    • (2002) Current Opinion in Microbiology , vol.5 , pp. 240-245
    • Torsvik, V.1    Øvreas, L.2
  • 50
    • 84860115124 scopus 로고    scopus 로고
    • Integrating microbial ecology into ecosystem models: Challenges and priorities
    • Treseder, K. K., et al. 2012. Integrating microbial ecology into ecosystem models: challenges and priorities. Biogeochemistry 109:7-18.
    • (2012) Biogeochemistry , vol.109 , pp. 7-18
    • Treseder, K.K.1
  • 51
    • 38649142473 scopus 로고    scopus 로고
    • The unseen majority: Soil microbes as drivers of plant diversity and productivity in terrestrial ecosystems
    • van der Heijden, M. G. A., R. D. Bardgett, and N. M. Van Straalen. 2008. The unseen majority: soil microbes as drivers of plant diversity and productivity in terrestrial ecosystems. Ecology Letters 11:296-310.
    • (2008) Ecology Letters , vol.11 , pp. 296-310
    • Van Der Heijden, M.G.A.1    Bardgett, R.D.2    Van Straalen, N.M.3
  • 54
    • 84887221497 scopus 로고    scopus 로고
    • Global soil carbon projections are improved by modelling microbial processes
    • Wieder, W. R., G. B. Bonan, and S. D. Allison. 2013. Global soil carbon projections are improved by modelling microbial processes. Nature Climate Change 3:909-912.
    • (2013) Nature Climate Change , vol.3 , pp. 909-912
    • Wieder, W.R.1    Bonan, G.B.2    Allison, S.D.3
  • 56
    • 84863032388 scopus 로고    scopus 로고
    • Differential responses of nirK- and nirS-carrying bacteria to denitrifying conditions in the anoxic rice field soil
    • Yuan, Q., P. Liu, and Y. Lu. 2012. Differential responses of nirK- and nirS-carrying bacteria to denitrifying conditions in the anoxic rice field soil. Environmental Microbiology Reports 4:113-122.
    • (2012) Environmental Microbiology Reports , vol.4 , pp. 113-122
    • Yuan, Q.1    Liu, P.2    Lu, Y.3


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