메뉴 건너뛰기




Volumn 13, Issue 4, 2014, Pages 826-838

Modeling thermophoretic effects in solid-state nanopores

Author keywords

Boundary driven MD; Molecular dynamics; Nanofluidics; Non equilibrium MD; Plasmonic heating; Soret coefficient; Thermodiffusion; Thermophoresis

Indexed keywords

BIOMOLECULES; DNA; HYDROGELS; MODULATION; MOLECULAR DYNAMICS; NANOFLUIDICS; PLASMONS; TEMPERATURE; THERMAL GRADIENTS; THERMOPHORESIS;

EID: 84927123546     PISSN: 15698025     EISSN: 15728137     Source Type: Journal    
DOI: 10.1007/s10825-014-0594-8     Document Type: Article
Times cited : (22)

References (96)
  • 1
    • 34248351114 scopus 로고    scopus 로고
    • Solid-state nanopores
    • Dekker, C.: Solid-state nanopores. Nat. Nanotechnol. 2, 209–215 (2007)
    • (2007) Nat. Nanotechnol. , vol.2 , pp. 209-215
    • Dekker, C.1
  • 3
    • 69249086081 scopus 로고    scopus 로고
    • Nanopore analytics: sensing of single molecules
    • Howorka, S., Siwy, Z.: Nanopore analytics: sensing of single molecules. Chem. Soc. Rev. 38(8), 2360–2384 (2009)
    • (2009) Chem. Soc. Rev. , vol.38 , Issue.8 , pp. 2360-2384
    • Howorka, S.1    Siwy, Z.2
  • 4
    • 53649108801 scopus 로고    scopus 로고
    • Xinsheng Sean, L., Mastrangelo, C.H., Meller, A., Oliver, J.S., Pershin, Y.V., Ramsey, J.M., Riehn, R., Soni, G.V., Tabard-Cossa, V., Wanunu, M., Wiggin, M., Schloss, J.A.: The potential and challenges of nanopore sequencing
    • Branton, D., Deamer, D.W., Marziali, A., Bayley, H., Benner, S.A., Butler, T., Di Ventra, M., Garaj, S., Hibbs, A., Huang, X., Jovanovich, S.B., Krstic, P.S., Lindsay, S.: Xinsheng Sean, L., Mastrangelo, C.H., Meller, A., Oliver, J.S., Pershin, Y.V., Ramsey, J.M., Riehn, R., Soni, G.V., Tabard-Cossa, V., Wanunu, M., Wiggin, M., Schloss, J.A.: The potential and challenges of nanopore sequencing. Nat. Biotechnol. 26(10), 1146–1153 (2008)
    • (2008) Nat. Biotechnol. , vol.26 , Issue.10 , pp. 1146-1153
    • Branton, D.1    Deamer, D.W.2    Marziali, A.3    Bayley, H.4    Benner, S.A.5    Butler, T.6    Di Ventra, M.7    Garaj, S.8    Hibbs, A.9    Huang, X.10    Jovanovich, S.B.11    Krstic, P.S.12    Lindsay, S.13
  • 7
    • 0030465241 scopus 로고    scopus 로고
    • Characterization of individual polynucleotide molecules using a membrane channel
    • Kasianowicz, J.J., Brandin, E., Branton, D., Deamer, D.W.: Characterization of individual polynucleotide molecules using a membrane channel. Proc. Natl. Acad. Sci. USA 93, 13770–13773 (1996)
    • (1996) Proc. Natl. Acad. Sci. USA , vol.93 , pp. 13770-13773
    • Kasianowicz, J.J.1    Brandin, E.2    Branton, D.3    Deamer, D.W.4
  • 8
    • 50849102996 scopus 로고    scopus 로고
    • Electro-osmotic screening of the DNA charge in a nanopore
    • Luan, B., Aksimentiev, A.: Electro-osmotic screening of the DNA charge in a nanopore. Phys. Rev. E 78, 021912 (2008)
    • (2008) Phys. Rev. E , vol.78 , pp. 021912
    • Luan, B.1    Aksimentiev, A.2
  • 9
    • 80052258551 scopus 로고    scopus 로고
    • Controlling molecular transport through nanopores
    • Keyser, U.F.: Controlling molecular transport through nanopores. J. R. Soc. Interface 8(63), 1369–1378 (2011)
    • (2011) J. R. Soc. Interface , vol.8 , Issue.63 , pp. 1369-1378
    • Keyser, U.F.1
  • 11
    • 58849087632 scopus 로고    scopus 로고
    • Microscopic mechanics of hairpin DNA translocation through synthetic nanopores
    • Comer, J., Dimitrov, V., Zhao, Q., Timp, G., Aksimentiev, A.: Microscopic mechanics of hairpin DNA translocation through synthetic nanopores. Biophys. J. 96(2), 593–608 (2009)
    • (2009) Biophys. J. , vol.96 , Issue.2 , pp. 593-608
    • Comer, J.1    Dimitrov, V.2    Zhao, Q.3    Timp, G.4    Aksimentiev, A.5
  • 12
    • 77953298585 scopus 로고    scopus 로고
    • Electrically facilitated translocations of proteins through silicon nitride nanopores: Conjoint and competitive action of diffusion, electrophoresis, and electroosmosis
    • Firnkes, M., Pedone, D., Knezevic, J., Doblinger, M., Rant, U.: Electrically facilitated translocations of proteins through silicon nitride nanopores: Conjoint and competitive action of diffusion, electrophoresis, and electroosmosis. Nano Lett. 10(6), 2162–2167 (2010)
    • (2010) Nano Lett. , vol.10 , Issue.6 , pp. 2162-2167
    • Firnkes, M.1    Pedone, D.2    Knezevic, J.3    Doblinger, M.4    Rant, U.5
  • 13
    • 84855450584 scopus 로고    scopus 로고
    • Modeling and simulation of nanoparticle separation through a solid-state nanopore
    • Jubery, T.Z., Prabhu, A.S., Kim, M.J., Dutta, P.: Modeling and simulation of nanoparticle separation through a solid-state nanopore. Electrophoresis 33(2), 325–333 (2012)
    • (2012) Electrophoresis , vol.33 , Issue.2 , pp. 325-333
    • Jubery, T.Z.1    Prabhu, A.S.2    Kim, M.J.3    Dutta, P.4
  • 14
    • 84883239984 scopus 로고    scopus 로고
    • Filtering of nanoparticles with tunable semiconductor membranes
    • Nadtochiy, A., Melnikov, D., Gracheva, M.: Filtering of nanoparticles with tunable semiconductor membranes. ACS Nano 7(8), 7053–7061 (2013)
    • (2013) ACS Nano , vol.7 , Issue.8 , pp. 7053-7061
    • Nadtochiy, A.1    Melnikov, D.2    Gracheva, M.3
  • 15
    • 0035831563 scopus 로고    scopus 로고
    • Voltage-driven DNA translocations through a nanopore
    • Meller, A., Nivon, L., Branton, D.: Voltage-driven DNA translocations through a nanopore. Phys. Rev. Lett. 86, 3435–3438 (2001)
    • (2001) Phys. Rev. Lett. , vol.86 , pp. 3435-3438
    • Meller, A.1    Nivon, L.2    Branton, D.3
  • 16
    • 76649116514 scopus 로고    scopus 로고
    • Electrostatic focusing of unlabelled DNA into nanoscale pores using a salt gradient
    • Wanunu, M., Morrison, W., Rabin, Y., Grosberg, A.Y., Meller, A.: Electrostatic focusing of unlabelled DNA into nanoscale pores using a salt gradient. Nat. Nanotechnol. 5(2), 169–165 (2010)
    • (2010) Nat. Nanotechnol. , vol.5 , Issue.2 , pp. 165-169
    • Wanunu, M.1    Morrison, W.2    Rabin, Y.3    Grosberg, A.Y.4    Meller, A.5
  • 17
    • 33845196984 scopus 로고    scopus 로고
    • Temperature-responsive protein pores
    • Jung, Y., Bayley, H., Movileanu, L.: Temperature-responsive protein pores. J. Am. Chem. Soc. 128(47), 15332–15340 (2006)
    • (2006) J. Am. Chem. Soc , vol.128 , Issue.47 , pp. 15332-15340
    • Jung, Y.1    Bayley, H.2    Movileanu, L.3
  • 18
    • 0035980607 scopus 로고    scopus 로고
    • Transport properties of thermo-responsive ion track membranes
    • Reber, N., Kuchel, A., Spohr, R., Wolf, A., Yoshida, M.: Transport properties of thermo-responsive ion track membranes. J. Memb. Sci. 193(1), 49–58 (2001)
    • (2001) J. Memb. Sci. , vol.193 , Issue.1 , pp. 49-58
    • Reber, N.1    Kuchel, A.2    Spohr, R.3    Wolf, A.4    Yoshida, M.5
  • 19
    • 37249033882 scopus 로고    scopus 로고
    • PNIPAAM-modified nanoporous colloidal films with positive and negative temperature gating
    • Schepelina, O., Zharov, I.: PNIPAAM-modified nanoporous colloidal films with positive and negative temperature gating. Langmuir 23(25), 12704–12709 (2007)
    • (2007) Langmuir , vol.23 , Issue.25 , pp. 12704-12709
    • Schepelina, O.1    Zharov, I.2
  • 20
    • 67649976476 scopus 로고    scopus 로고
    • Ionic transport through single solid-state nanopores controlled with thermally nanoactuated macromolecular gates
    • Yameen, B., Ali, M., Neumann, R., Ensinger, W., Knoll, W., Azzaroni, O.: Ionic transport through single solid-state nanopores controlled with thermally nanoactuated macromolecular gates. Small 5(11), 1287–1291 (2009)
    • (2009) Small , vol.5 , Issue.11 , pp. 1287-1291
    • Yameen, B.1    Ali, M.2    Neumann, R.3    Ensinger, W.4    Knoll, W.5    Azzaroni, O.6
  • 22
    • 84861083762 scopus 로고    scopus 로고
    • Thermally controlled permeation of ionic molecules through synthetic nanopores functionalized with amine-terminated polymer brushes
    • Nasir, S., Ali, M., Ensinger, W.: Thermally controlled permeation of ionic molecules through synthetic nanopores functionalized with amine-terminated polymer brushes. Nanotechnology 23(22), 225502 (2012)
    • (2012) Nanotechnology , vol.23 , Issue.22 , pp. 225502
    • Nasir, S.1    Ali, M.2    Ensinger, W.3
  • 23
    • 84874995365 scopus 로고    scopus 로고
    • Plasmonic nanopore for electrical profiling of optical intensity landscapes
    • Jonsson, M.P., Dekker, C.: Plasmonic nanopore for electrical profiling of optical intensity landscapes. Nano Lett. 13(3), 1029–1033 (2013)
    • (2013) Nano Lett. , vol.13 , Issue.3 , pp. 1029-1033
    • Jonsson, M.P.1    Dekker, C.2
  • 25
    • 0000343089 scopus 로고    scopus 로고
    • Photothermal applications of lasers: study of fast and ultrafast photothermal phenomena at metal-liquid interfaces
    • Harata, A., Shen, Q., Sawada, T.: Photothermal applications of lasers: study of fast and ultrafast photothermal phenomena at metal-liquid interfaces. Annu. Rev. Phys. Chem. 50, 193–219 (1999)
    • (1999) Annu. Rev. Phys. Chem. , vol.50 , pp. 193-219
    • Harata, A.1    Shen, Q.2    Sawada, T.3
  • 26
    • 2942612663 scopus 로고    scopus 로고
    • Investigation of the properties of gold nanoparticles in aqueous solution at extremely high lattice temperatures
    • Min, H., Petrova, H., Hartland, G.V.: Investigation of the properties of gold nanoparticles in aqueous solution at extremely high lattice temperatures. Chem. Phys. Lett. 391, 220–225 (2004)
    • (2004) Chem. Phys. Lett. , vol.391 , pp. 220-225
    • Min, H.1    Petrova, H.2    Hartland, G.V.3
  • 28
    • 84883218258 scopus 로고    scopus 로고
    • Stretching and controlled motion of single-stranded DNA in locally heated solid-state nanopores
    • Belkin, M., Maffeo, C., Wells, D.B., Aksimentiev, A.: Stretching and controlled motion of single-stranded DNA in locally heated solid-state nanopores. ACS Nano 7(8), 6816–6824 (2013)
    • (2013) ACS Nano , vol.7 , Issue.8 , pp. 6816-6824
    • Belkin, M.1    Maffeo, C.2    Wells, D.B.3    Aksimentiev, A.4
  • 29
    • 84872846190 scopus 로고    scopus 로고
    • Thermophoretic manipulation of DNA translocation through nanopores
    • He, Y., Tsutsui, M., Scheicher, R.H., Bai, F., Taniguchi, M., Kawai, T.: Thermophoretic manipulation of DNA translocation through nanopores. ACS Nano 7(1), 538–546 (2013)
    • (2013) ACS Nano , vol.7 , Issue.1 , pp. 538-546
    • He, Y.1    Tsutsui, M.2    Scheicher, R.H.3    Bai, F.4    Taniguchi, M.5    Kawai, T.6
  • 30
    • 33746255963 scopus 로고    scopus 로고
    • Optothermal molecule trapping by opposing fluid flow with thermophoretic drift
    • Duhr, S., Braun, D.: Optothermal molecule trapping by opposing fluid flow with thermophoretic drift. Phys. Rev. Lett. 97(3), 038103 (2006)
    • (2006) Phys. Rev. Lett. , vol.97 , Issue.3 , pp. 038103
    • Duhr, S.1    Braun, D.2
  • 31
    • 84860390443 scopus 로고    scopus 로고
    • Molecular interaction studies using microscale thermophoresis. Assay Drug Dev
    • Jerabek-Willemsen, M., Wienken, C.J., Braun, D., Baaske, P., Duhr, S.: Molecular interaction studies using microscale thermophoresis. Assay Drug Dev. Technol. 9(4), 342–353 (2011)
    • (2011) Technol , vol.9 , Issue.4 , pp. 342-353
    • Jerabek-Willemsen, M.1    Wienken, C.J.2    Braun, D.3    Baaske, P.4    Duhr, S.5
  • 32
    • 0000631742 scopus 로고
    • Diffusion zwischen ungleich erwärmten Orten gleich zusammengesetzter Lösungen
    • Ludwig, C.: Diffusion zwischen ungleich erwärmten Orten gleich zusammengesetzter Lösungen. Sitzungsber. Akad. Wiss. Wien Math.-Naturwiss. 20, 539 (1856)
    • (1856) Sitzungsber. Akad. Wiss. Wien Math.-Naturwiss. , vol.20 , pp. 539
    • Ludwig, C.1
  • 33
    • 0001846333 scopus 로고
    • Sur l’état d’équilibre que prend, du point de vue de sa concentration, une dissolution saline primitivement homogéne, dont deux parties sont portées a des températures différentes
    • Soret, C.: Sur l’état d’équilibre que prend, du point de vue de sa concentration, une dissolution saline primitivement homogéne, dont deux parties sont portées a des températures différentes. Arch. Sci. Phys. Nat. 2, 48–61 (1879)
    • (1879) Arch. Sci. Phys. Nat , vol.2 , pp. 48-61
    • Soret, C.1
  • 35
    • 33748930874 scopus 로고
    • Thermal diffusion in solutions of electrolytes
    • Agar, J.N., Turner, J.C.R.: Thermal diffusion in solutions of electrolytes. Proc. R. Soc. A 255(1282), 307–330 (1960)
    • (1960) Proc. R. Soc. A , vol.255 , Issue.1282 , pp. 307-330
    • Agar, J.N.1    Turner, J.C.R.2
  • 36
    • 0013610208 scopus 로고
    • The Soret effect in some 0.01 normal aqueous electrolytes
    • Snowdon, P.N., Turner, J.C.R.: The Soret effect in some 0.01 normal aqueous electrolytes. Trans. Faraday Soc. 56(10), 1409–1418 (1960)
    • (1960) Trans. Faraday Soc. , vol.56 , Issue.10 , pp. 1409-1418
    • Snowdon, P.N.1    Turner, J.C.R.2
  • 38
    • 0011096371 scopus 로고
    • Thermal diffusion in polymer solutions
    • Emery, A.H., Drickamer, H.G.: Thermal diffusion in polymer solutions. J. Chem. Phys. 23(12), 2252–2257 (1955)
    • (1955) J. Chem. Phys. , vol.23 , Issue.12 , pp. 2252-2257
    • Emery, A.H.1    Drickamer, H.G.2
  • 40
    • 3843106302 scopus 로고
    • Soret-type motion of macromolecules in solution
    • Giglio, M., Vendramini, A.: Soret-type motion of macromolecules in solution. Phys. Rev. Lett. 38(1), 26–30 (1977)
    • (1977) Phys. Rev. Lett. , vol.38 , Issue.1 , pp. 26-30
    • Giglio, M.1    Vendramini, A.2
  • 41
    • 42449157611 scopus 로고
    • Separation of seawater by Soret diffusion
    • Caldwell, D.R., Eide, S.A.: Separation of seawater by Soret diffusion. Deep-Sea Res. 32(8), 965–982 (1985)
    • (1985) Deep-Sea Res. , vol.32 , Issue.8 , pp. 965-982
    • Caldwell, D.R.1    Eide, S.A.2
  • 43
    • 11744354111 scopus 로고
    • Thermal diffusion of 1:1 electrolytes in ordinary and in heavy water
    • Wood, C., Hawksworth, W.: Thermal diffusion of 1:1 electrolytes in ordinary and in heavy water. Afr. Chem. Inst. 24, 170 (1971)
    • (1971) Afr. Chem. Inst , vol.24 , pp. 170
    • Wood, C.1    Hawksworth, W.2
  • 44
    • 0141578963 scopus 로고
    • Thermal and Fickian diffusion of sodium chloride in a solution of oceanic concentration
    • Caldwell, D.R.: Thermal and Fickian diffusion of sodium chloride in a solution of oceanic concentration. Deep-Sea Res. 20(11), 1029–1039 (1973)
    • (1973) Deep-Sea Res. , vol.20 , Issue.11 , pp. 1029-1039
    • Caldwell, D.R.1
  • 45
    • 0000140014 scopus 로고
    • Radiation pressure theory of thermal diffusion in liquids
    • Gaeta, F.S.: Radiation pressure theory of thermal diffusion in liquids. Phys. Rev. 182(1), 289–296 (1969)
    • (1969) Phys. Rev. , vol.182 , Issue.1 , pp. 289-296
    • Gaeta, F.S.1
  • 46
    • 0001533754 scopus 로고    scopus 로고
    • Thermal diffusion in (LiCl, RH2O)
    • Colombani, J., Bert, J., Dupuy-Philon, J.: Thermal diffusion in (LiCl, RH2O). J. Chem. Phys. 110(17), 8622–8627 (1999)
    • (1999) J. Chem. Phys. , vol.110 , Issue.17 , pp. 8622-8627
    • Colombani, J.1    Bert, J.2    Dupuy-Philon, J.3
  • 47
    • 0242358351 scopus 로고    scopus 로고
    • Thermal diffusion in disperse systems
    • Morozov, K.: Thermal diffusion in disperse systems. J. Exp. Theor. Phys. 88, 944–946 (1999)
    • (1999) J. Exp. Theor. Phys. , vol.88 , pp. 944-946
    • Morozov, K.1
  • 48
    • 33646382855 scopus 로고    scopus 로고
    • Thermophoretic depletion follows Boltzmann distribution
    • Duhr, S., Braun, D.: Thermophoretic depletion follows Boltzmann distribution. Phys. Rev. Lett. 96, 168301 (2006)
    • (2006) Phys. Rev. Lett. , vol.96 , pp. 168301
    • Duhr, S.1    Braun, D.2
  • 49
    • 5044247403 scopus 로고    scopus 로고
    • Thermal-lensing measurement of particle thermophoresis in aqueous dispersions
    • Rusconi, R., Isa, L., Piazza, R.: Thermal-lensing measurement of particle thermophoresis in aqueous dispersions. J. Opt. Soc. Am. B 21(3), 605–616 (2004)
    • (2004) J. Opt. Soc. Am. B , vol.21 , Issue.3 , pp. 605-616
    • Rusconi, R.1    Isa, L.2    Piazza, R.3
  • 50
    • 45849155266 scopus 로고    scopus 로고
    • Molecular origin of thermal diffusion in benzene plus cyclohexane mixtures
    • Debuschewitz, C., Kohler, W.: Molecular origin of thermal diffusion in benzene plus cyclohexane mixtures. Phys. Rev. Lett. 87(5), 055901 (2001)
    • (2001) Phys. Rev. Lett. , vol.87 , Issue.5 , pp. 055901
    • Debuschewitz, C.1    Kohler, W.2
  • 51
    • 36849139881 scopus 로고
    • Theory of the heat of transport of electrolytic solutions
    • Helfand, E., Kirkwood, J.G.: Theory of the heat of transport of electrolytic solutions. J. Chem. Phys. 32(3), 857–866 (1960)
    • (1960) J. Chem. Phys , vol.32 , Issue.3 , pp. 857-866
    • Helfand, E.1    Kirkwood, J.G.2
  • 53
    • 35248901833 scopus 로고    scopus 로고
    • Jiang, H.-R., Sano, M.: Stretching single molecular dna by temperature gradient. Appl. Phys. Lett. 91(15), 154104 (2007)
    • Jiang, H.-R., Sano, M.: Stretching single molecular dna by temperature gradient. Appl. Phys. Lett. 91(15), 154104 (2007)
  • 55
    • 0036392715 scopus 로고    scopus 로고
    • Genetically engineered gold-binding polypeptides: structure prediction and molecular dynamics
    • Braun, R., Sarikaya, M., Schulten, K.: Genetically engineered gold-binding polypeptides: structure prediction and molecular dynamics. J. Biomater. Sci. 13, 747–758 (2002)
    • (2002) J. Biomater. Sci. , vol.13 , pp. 747-758
    • Braun, R.1    Sarikaya, M.2    Schulten, K.3
  • 56
    • 33845917564 scopus 로고    scopus 로고
    • Why molecules move along a temperature gradient
    • Duhr, S., Braun, D.: Why molecules move along a temperature gradient. Proc. Natl. Acad. Sci. USA 103(52), 19678–19682 (2006)
    • (2006) Proc. Natl. Acad. Sci. USA , vol.103 , Issue.52 , pp. 19678-19682
    • Duhr, S.1    Braun, D.2
  • 57
    • 27744489170 scopus 로고    scopus 로고
    • A microscopic approach to thermophoresis in colloidal suspensions
    • Parola, A., Piazza, R.: A microscopic approach to thermophoresis in colloidal suspensions. J. Phys.: Condens. Matter 17(45, SI), S3639–S3643 (2005)
    • (2005) J. Phys.: Condens. Matter , vol.17 , Issue.45, SI , pp. 3639-3643
    • Parola, A.1    Piazza, R.2
  • 58
    • 37649029912 scopus 로고    scopus 로고
    • Symmetric diffusion equations, barodiffusion, and cross-diffusion in concentrated liquid mixtures
    • Schimpf, M.E., Semenov, S.N.: Symmetric diffusion equations, barodiffusion, and cross-diffusion in concentrated liquid mixtures. Phys. Rev. E 70, 031202 (2004)
    • (2004) Phys. Rev. E , vol.70 , Issue.31202
    • Schimpf, M.E.1    Semenov, S.N.2
  • 59
    • 0043121062 scopus 로고
    • Kinetic theory of thermal diffusion in dilute polymer solutions
    • Ham, J.S.: Kinetic theory of thermal diffusion in dilute polymer solutions. J. Appl. Phys. 31(11), 1853–1858 (1960)
    • (1960) J. Appl. Phys. , vol.31 , Issue.11 , pp. 1853-1858
    • Ham, J.S.1
  • 60
    • 1142266034 scopus 로고
    • On the theory of thermal diffusion in dilute polymer solutions
    • Khazanovich, T.N.: On the theory of thermal diffusion in dilute polymer solutions. J. Polymer Sci.: Part C 16, 2463–2468 (1967)
    • (1967) J. Polymer Sci. : Part C , vol.16 , pp. 2463-2468
    • Khazanovich, T.N.1
  • 61
    • 0042333427 scopus 로고    scopus 로고
    • Prediction of polymer thermal diffusion coefficients from polymer-solvent interaction parameters: Comparison with thermal field flow fractionation and thermal diffusion forced rayleigh scattering experiments
    • Mes, E.P.C., Kok, WTh, Tijssen, R.: Prediction of polymer thermal diffusion coefficients from polymer-solvent interaction parameters: Comparison with thermal field flow fractionation and thermal diffusion forced rayleigh scattering experiments. Int. J. Polym. Anal. Charact. 8(2), 133–153 (2003)
    • (2003) Int. J. Polym. Anal. Charact. , vol.8 , Issue.2 , pp. 133-153
    • Mes, E.P.C.1    Kok, W.T.2    Tijssen, R.3
  • 62
    • 0041510618 scopus 로고    scopus 로고
    • Two-chamber lattice model for thermodiffusion in polymer solutions
    • Luettmer-Strathmann, J.: Two-chamber lattice model for thermodiffusion in polymer solutions. J. Chem. Phys. 119(5), 2892–2902 (2003)
    • (2003) J. Chem. Phys. , vol.119 , Issue.5 , pp. 2892-2902
    • Luettmer-Strathmann, J.1
  • 63
    • 33749259560 scopus 로고    scopus 로고
    • The Soret effect in dilute polymer solutions: Influence of chain length, chain stiffness, and solvent quality
    • Zhang, M., Mueller-Plathe, F.: The Soret effect in dilute polymer solutions: Influence of chain length, chain stiffness, and solvent quality. J. Chem. Phys. 125(12), 124903 (2006)
    • (2006) J. Chem. Phys. , vol.125 , Issue.12 , pp. 124903
    • Zhang, M.1    Mueller-Plathe, F.2
  • 64
    • 0002425296 scopus 로고
    • Can phoretic motions be treated as interfacial tension gradient driven phenomena?
    • Ruckenstein, E.: Can phoretic motions be treated as interfacial tension gradient driven phenomena? J. Coll. Interface Sci. 83(1), 77–81 (1981)
    • (1981) J. Coll. Interface Sci. , vol.83 , Issue.1 , pp. 77-81
    • Ruckenstein, E.1
  • 66
    • 1842584402 scopus 로고    scopus 로고
    • Thermophoresis of dissolved molecules and polymers: consideration of the temperature-induced macroscopic pressure gradient
    • Semenov, S., Schimpf, M.: Thermophoresis of dissolved molecules and polymers: consideration of the temperature-induced macroscopic pressure gradient. Phys. Rev. E 69, 011201 (2004)
    • (2004) Phys. Rev. E , vol.69 , Issue.11201
    • Semenov, S.1    Schimpf, M.2
  • 67
    • 0037141508 scopus 로고    scopus 로고
    • Piazza, v., Guarino, A.: Soret effect in interacting micellar solutions. Phys. Rev. Lett. 88(20), 208302 (2002)
    • Piazza, v., Guarino, A.: Soret effect in interacting micellar solutions. Phys. Rev. Lett. 88(20), 208302 (2002)
  • 68
    • 0038731312 scopus 로고    scopus 로고
    • Colloid transport in nonuniform temperature
    • Bringuier, E., Bourdon, A.: Colloid transport in nonuniform temperature. Phys. Rev. E 67(1, Part 1), 011404 (2003)
    • (2003) Phys. Rev. E 67(1, Part , vol.1 , Issue.11404
    • Bringuier, E.1    Bourdon, A.2
  • 69
    • 17044407877 scopus 로고    scopus 로고
    • Thermophoresis for a single charged colloidal particle
    • Rasuli, S.N., Golestanian, R.: Thermophoresis for a single charged colloidal particle. J. Phys.: Condens. Matter 17(14, SI), S1171–S1176 (2005)
    • (2005) J. Phys.: Condens. Matter , vol.17 , Issue.14, SI , pp. 1171-1176
    • Rasuli, S.N.1    Golestanian, R.2
  • 70
    • 0002493935 scopus 로고
    • Colloid transport by interfacial forces
    • Anderson, J.L.: Colloid transport by interfacial forces. Annu. Rev. Fluid Mech. 21, 61–99 (1989)
    • (1989) Annu. Rev. Fluid Mech. , vol.21 , pp. 61-99
    • Anderson, J.L.1
  • 71
    • 0001261359 scopus 로고
    • Heat and matter transport in binary-liquid mixtures
    • Macgowan, D., Evans, D.J.: Heat and matter transport in binary-liquid mixtures. Phys. Rev. A 34(3), 2133–2142 (1986)
    • (1986) Phys. Rev. A , vol.34 , Issue.3 , pp. 2133-2142
    • Macgowan, D.1    Evans, D.J.2
  • 72
    • 0032173207 scopus 로고    scopus 로고
    • Thermal diffusion in alkane binary mixtures: A molecular dynamics approach
    • Simon, J.-M., Dysthe, D.K., Fuchs, A.H., Rousseau, B.: Thermal diffusion in alkane binary mixtures: A molecular dynamics approach. Fluid Phase Equilib. 150151, 151–159 (1998)
    • (1998) Fluid Phase Equilib. , pp. 151-159
    • Simon, J.-M.1    Dysthe, D.K.2    Fuchs, A.H.3    Rousseau, B.4
  • 73
    • 0001136733 scopus 로고    scopus 로고
    • On the nature of thermal diffusion in binary Lennard-Jones liquids
    • Reith, D., Muller-Plathe, F.: On the nature of thermal diffusion in binary Lennard-Jones liquids. J. Chem. Phys. 112(5), 2436–2443 (2000)
    • (2000) J. Chem. Phys , vol.112 , Issue.5 , pp. 2436-2443
    • Reith, D.1    Muller-Plathe, F.2
  • 74
    • 0000179330 scopus 로고
    • Soret coefficient of isotopic Lennard-Jones mixtures and the ar-kr system as determined by equilibrium molecular-dynamics calculations
    • Vogelsang, R., Hoheisel, C., Paolini, G.V., Ciccotti, G.: Soret coefficient of isotopic Lennard-Jones mixtures and the ar-kr system as determined by equilibrium molecular-dynamics calculations. Phys. Rev. A 36(8), 3964–3974 (1987)
    • (1987) Phys. Rev. A , vol.36 , Issue.8 , pp. 3964-3974
    • Vogelsang, R.1    Hoheisel, C.2    Paolini, G.V.3    Ciccotti, G.4
  • 75
    • 33947610602 scopus 로고    scopus 로고
    • Microscopic interpretation of a pure chemical contribution to the Soret effect
    • Artola, P.-A., Rousseau, B.: Microscopic interpretation of a pure chemical contribution to the Soret effect. Phys. Rev. Lett. 98(12), 125901 (2007)
    • (2007) Phys. Rev. Lett. , vol.98 , Issue.12 , pp. 125901
    • Artola, P.-A.1    Rousseau, B.2
  • 77
    • 0001389840 scopus 로고
    • On the molecular mechanism of thermal diffusion in liquids
    • Hafskjold, B., Ikeshoji, T., Ratkje, S.K.: On the molecular mechanism of thermal diffusion in liquids. Mol. Phys. 80(6), 1389–1412 (1993)
    • (1993) Mol. Phys. , vol.80 , Issue.6 , pp. 1389-1412
    • Hafskjold, B.1    Ikeshoji, T.2    Ratkje, S.K.3
  • 78
    • 0344341434 scopus 로고
    • Non-equilibrium molecular dynamics calculation of heat conduction in liquid and through liquid-gas interface
    • Ikeshoji, T., Hafskjold, B.: Non-equilibrium molecular dynamics calculation of heat conduction in liquid and through liquid-gas interface. Mol. Phys. 81(2), 251–261 (1994)
    • (1994) Mol. Phys. , vol.81 , Issue.2 , pp. 251-261
    • Ikeshoji, T.1    Hafskjold, B.2
  • 79
    • 84891865827 scopus 로고    scopus 로고
    • Bresme, F., Armstrong, J.: Note: local thermal conductivities from boundary driven non-equilibrium molecular dynamics simulations. J. Chem. Phys. 140(1), 016102 (2014)
    • Bresme, F., Armstrong, J.: Note: local thermal conductivities from boundary driven non-equilibrium molecular dynamics simulations. J. Chem. Phys. 140(1), 016102 (2014)
  • 80
    • 84880146550 scopus 로고    scopus 로고
    • Alkali halide solutions under thermal gradients: Soret coefficients and heat transfer mechanisms
    • Römer, F., Wang, Z., Wiegand, S., Bresme, F.: Alkali halide solutions under thermal gradients: Soret coefficients and heat transfer mechanisms. J. Phys. Chem. B 117(27), 8209–8222 (2013)
    • (2013) J. Phys. Chem. B , vol.117 , Issue.27 , pp. 8209-8222
    • Römer, F.1    Wang, Z.2    Wiegand, S.3    Bresme, F.4
  • 81
    • 84870610774 scopus 로고    scopus 로고
    • Heat conduction and thermomolecular orientation in diatomic fluids: a non-equilibrium molecular dynamics study
    • Römer, F., Bresme, F.: Heat conduction and thermomolecular orientation in diatomic fluids: a non-equilibrium molecular dynamics study. Mol. Sim. 38(14–15), 1198–1208 (2012)
    • (2012) Mol. Sim. , vol.38 , Issue.14-15 , pp. 1198-1208
    • Römer, F.1    Bresme, F.2
  • 82
    • 84903362874 scopus 로고    scopus 로고
    • Water polarization induced by thermal gradients: the extended simple point charge model (SPC/E)
    • Armstrong, J., Bresme, F.: Water polarization induced by thermal gradients: the extended simple point charge model (SPC/E). J. Chem. Phys. 139(1), 014504 (2013)
    • (2013) J. Chem. Phys. , vol.139 , Issue.1 , pp. 014504
    • Armstrong, J.1    Bresme, F.2
  • 83
    • 0348244547 scopus 로고    scopus 로고
    • All-atom empirical force field for nucleic acids: I. Parameter optimization based on small molecule and condensed phase macromolecular target data
    • Foloppe, N., MacKerrell Jr, A.D.: All-atom empirical force field for nucleic acids: I. Parameter optimization based on small molecule and condensed phase macromolecular target data. J. Comput. Chem. 21, 86–104 (2000)
    • (2000) J. Comput. Chem. , vol.21 , pp. 86-104
    • Foloppe, N.1    MacKerrell, A.D.2
  • 84
    • 84855431691 scopus 로고    scopus 로고
    • Improved parametrization of Li+, Na+, K+, and Mg2+ ions for all-atom molecular dynamics simulations of nucleic acid systems
    • Yoo, J., Aksimentiev, A.: Improved parametrization of Li+, Na+, K+, and Mg2+ ions for all-atom molecular dynamics simulations of nucleic acid systems. J. Phys. Chem. Lett. 3(1), 45–50 (2012)
    • (2012) J. Phys. Chem. Lett. , vol.3 , Issue.1 , pp. 45-50
    • Yoo, J.1    Aksimentiev, A.2
  • 85
    • 84986440341 scopus 로고
    • SETTLE: an analytical version of the SHAKE and RATTLE algorithm for rigid water molecules
    • Miyamoto, S., Kollman, P.A.: SETTLE: an analytical version of the SHAKE and RATTLE algorithm for rigid water molecules. J. Comput. Chem. 13(8), 952–962 (1992)
    • (1992) J. Comput. Chem. , vol.13 , Issue.8 , pp. 952-962
    • Miyamoto, S.1    Kollman, P.A.2
  • 86
    • 48749148224 scopus 로고
    • RATTLE: a “velocity” version of the SHAKE algorithm for molecular dynamics calculations
    • Andersen, H.C.: RATTLE: a “velocity” version of the SHAKE algorithm for molecular dynamics calculations. J. Comput. Phys. 52(1), 24–34 (1983)
    • (1983) J. Comput. Phys. , vol.52 , Issue.1 , pp. 24-34
    • Andersen, H.C.1
  • 87
    • 34447255444 scopus 로고    scopus 로고
    • Correcting mesh-based force calculations to conserve both energy and momentum in molecular dynamics simulations
    • Skeel, R.D., Hardy, D.J., Phillips, J.C.: Correcting mesh-based force calculations to conserve both energy and momentum in molecular dynamics simulations. J. Comput. Phys. 225(1), 1–5 (2007)
    • (2007) J. Comput. Phys , vol.225 , Issue.1 , pp. 1-5
    • Skeel, R.D.1    Hardy, D.J.2    Phillips, J.C.3
  • 88
    • 0035449971 scopus 로고    scopus 로고
    • Optimized particle-mesh Ewald/multiple-time step integration for molecular dynamics simulations
    • Batcho, P.F., Case, D.A., Schlick, T.: Optimized particle-mesh Ewald/multiple-time step integration for molecular dynamics simulations. J. Chem. Phys. 115(9), 4003–4018 (2001)
    • (2001) J. Chem. Phys , vol.115 , Issue.9 , pp. 4003-4018
    • Batcho, P.F.1    Case, D.A.2    Schlick, T.3
  • 89
    • 34848830419 scopus 로고    scopus 로고
    • Exploring transmembrane transport through $$\alpha $$α-hemolysin with grid-steered molecular dynamics
    • Wells, D.B., Abramkina, V., Aksimentiev, A.: Exploring transmembrane transport through $$\alpha $$α-hemolysin with grid-steered molecular dynamics. J. Chem. Phys. 127, 125101 (2007)
    • (2007) J. Chem. Phys , vol.127
    • Wells, D.B.1    Abramkina, V.2    Aksimentiev, A.3
  • 90
    • 34547925931 scopus 로고    scopus 로고
    • Advantages of a Lowe-Andersen thermostat in molecular dynamics simulations
    • Koopman, E.A., Lowe, C.P.: Advantages of a Lowe-Andersen thermostat in molecular dynamics simulations. J. Chem. Phys. 124, 204103 (2006)
    • (2006) J. Chem. Phys. , vol.124 , pp. 204103
    • Koopman, E.A.1    Lowe, C.P.2
  • 91
    • 49449085241 scopus 로고    scopus 로고
    • Determination of alkali and halide monovalent ion parameters for use in explicitly solvated biomolecular simulations
    • Joung, I.S., Cheatham, T.E.: Determination of alkali and halide monovalent ion parameters for use in explicitly solvated biomolecular simulations. J. Phys. Chem. B 112(30), 9020–9041 (2008)
    • (2008) J. Phys. Chem. B , vol.112 , Issue.30 , pp. 9020-9041
    • Joung, I.S.1    Cheatham, T.E.2
  • 92
    • 84855661433 scopus 로고    scopus 로고
    • Optimization of the CHARMM additive force field for DNA: improved treatment of the BI/BII conformational equilibrium
    • Hart, K., Foloppe, N., Baker, C.M., Denning, E.J., Nilsson, L., MacKerell, A.D.: Optimization of the CHARMM additive force field for DNA: improved treatment of the BI/BII conformational equilibrium. J. Chem. Theory Comput. 8(1), 348–362 (2012)
    • (2012) J. Chem. Theory Comput. , vol.8 , Issue.1 , pp. 348-362
    • Hart, K.1    Foloppe, N.2    Baker, C.M.3    Denning, E.J.4    Nilsson, L.5    MacKerell, A.D.6
  • 93
    • 67849110013 scopus 로고    scopus 로고
    • 3D-DART: a DNA structure modelling server
    • van Dijk, M., Bonvin, A.M.J.J.: 3D-DART: a DNA structure modelling server. Nucleic Acids Res. 37, W235–W239 (2009)
    • (2009) Nucleic Acids Res. , vol.37 , pp. 235-239
    • van Dijk, M.1    Bonvin, A.M.J.J.2
  • 95
    • 84906237862 scopus 로고    scopus 로고
    • A coarse-grained model of unstructured single-stranded DNA derived from atomistic simulation and single-molecule experiment. J. Chem
    • Maffeo, C., Ngo, T.T.M., Ha, T., Aksimentiev, A.: A coarse-grained model of unstructured single-stranded DNA derived from atomistic simulation and single-molecule experiment. J. Chem. Theory Comput. (2014). doi:10.1021/ct500193u
    • (2014) Theory Comput
    • Maffeo, C.1    Ngo, T.T.M.2    Ha, T.3    Aksimentiev, A.4
  • 96
    • 84927123032 scopus 로고    scopus 로고
    • A First Principles Approach. Mercury Learning Series. Mercury Learning and Information, Dulles, VA:
    • Pryor, R.W.: Multiphysics Modeling Using COMSOL 4: A First Principles Approach. Mercury Learning Series. Mercury Learning and Information, Dulles, VA (2012)
    • (2012) Multiphysics Modeling Using COMSOL , vol.4
    • Pryor, R.W.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.