The prevalence of STL polyomavirus in stool samples from Chinese children

Journal of Clinical Virology

Volumn 66, Issue , 2015, Pages 19-23

  Li, Ke ^a   Zhang, Chi ^a   Zhao, Rong ^a   Xue, Ying ^a   Yang, Jian ^a   Peng, Junping ^a   Jin, Qi ^a  

^a INSTITUTE OF PATHOGEN BIOLOGY   (China)

Author keywords

Gastroenteriti; MALDI TOF mass spectrometry; Polyomavirus; STL polyomavirus

Indexed keywords

VIRUS RNA; VIRUS DNA;

ACUTE GASTROENTERITIS; ADENOVIRIDAE; ARTICLE; ASTROVIRUS; CHILD; CHINESE; CONTROLLED STUDY; DIARRHEA; DISEASE DURATION; FECES ANALYSIS; FEMALE; GENE SEQUENCE; GENOTYPE; HUMAN; INFANT; LIMIT OF DETECTION; MAJOR CLINICAL STUDY; MALE; MATRIX ASSISTED LASER DESORPTION IONIZATION TIME OF FLIGHT MASS SPECTROMETRY; MIXED INFECTION; MULTIPLEX POLYMERASE CHAIN REACTION; NONHUMAN; NOROVIRUS; PHYLOGENY; POLYOMA VIRUS; PRESCHOOL CHILD; PRIORITY JOURNAL; ROTAVIRUS; SAPOVIRUS; SCHOOL CHILD; SENSITIVITY AND SPECIFICITY; STL POLYOMAVIRUS; VIRUS DETECTION; VIRUS GENE; VOMITING; ASIAN CONTINENTAL ANCESTRY GROUP; CHEMISTRY; CHINA; CLASSIFICATION; CLUSTER ANALYSIS; DNA SEQUENCE; FECES; GENETICS; ISOLATION AND PURIFICATION; MOLECULAR GENETICS; POLYOMAVIRUS; POLYOMAVIRUS INFECTIONS; PREVALENCE; SEQUENCE HOMOLOGY; VIROLOGY; VIRUS GENOME;

ASIAN CONTINENTAL ANCESTRY GROUP; CHILD, PRESCHOOL; CHINA; CLUSTER ANALYSIS; DIARRHEA; DNA, VIRAL; FECES; FEMALE; GENOME, VIRAL; HUMANS; INFANT; MALE; MOLECULAR SEQUENCE DATA; PHYLOGENY; POLYOMAVIRUS; POLYOMAVIRUS INFECTIONS; PREVALENCE; SEQUENCE ANALYSIS, DNA; SEQUENCE HOMOLOGY;

EID: 84926677994     PISSN: 13866532     EISSN: 18735967     Source Type: Journal    
DOI: 10.1016/j.jcv.2015.02.017     Document Type: Article

References (42)

1. Kapikian A.Z., Wyatt R.G., Dolin R., Thornhill T.S., Kalica A.R., Chanock R.M. Visualization by immune electron microscopy of a 27-nm particle associated with acute infectious nonbacterial gastroenteritis. J. Virol. 1972, 10:1075-1081.
2. Wilhelmi I., Roman E., Sanchez-Fauquier A. Viruses causing gastroenteritis. Clin. Microbiol. Infect. 2003, 9:247-262.
3. Clark B., McKendrick M. A review of viral gastroenteritis. Curr. Opin. Infect. Dis. 2004, 17:461-469.
4. Stolt A., Sasnauskas K., Koskela P., Lehtinen M., Dillner J. Seroepidemiology of the human polyomaviruses. J. Gen. Virol. 2003, 84:1499-1504.
5. Kean J.M., Rao S., Wang M., Garcea R.L. Seroepidemiology of human polyomaviruses. PLoS Pathog. 2009, 5:e1000363.
6. Viscidi R.P., Rollison D.E., Sondak V.K., Silver B., Messina J.L., Giuliano A.R., et al. Age-specific seroprevalence of Merkel cell polyomavirus, BK virus, and JC virus. Clin. Vaccine Immunol. 2011, 18:1737-1743.
7. Lim E.S., Meinerz N.M., Primi B., Wang D., Garcea R.L. Common exposure to STL polyomavirus during childhood. Emerg. Infect Dis. 2014, 20:1559-1561.
8. Gardner S.D., Field A.M., Coleman D.V., Hulme B. New human papovavirus (B.K) isolated from urine after renal transplantation. Lancet 1971, 1:1253-1257.
9. Padgett B.L., Walker D.L., ZuRhein G.M., Eckroade R.J., Dessel B.H. Cultivation of papova-like virus from human brain with progressive multifocal leucoencephalopathy. Lancet 1971, 1:1257-1260.
10. Allander T., Andreasson K., Gupta S., Bjerkner A., Bogdanovic G., Persson M.A., et al. Identification of a third human polyomavirus. J. Virol. 2007, 81:4130-4136.
11. Bialasiewicz S., Whiley D.M., Lambert S.B., Wang D., Nissen M.D., Sloots T.P. A newly reported human polyomavirus, KI virus, is present in the respiratory tract of Australian children. J. Clin. Virol. 2007, 40:15-18.
12. Feng H., Shuda M., Chang Y., Moore P.S. Clonal integration of a polyomavirus in human Merkel cell carcinoma. Science 2008, 319:1096-1100.
13. Schowalter R.M., Pastrana D.V., Pumphrey K.A., Moyer A.L., Buck C.B. Merkel cell polyomavirus and two previously unknown polyomaviruses are chronically shed from human skin. Cell Host Microbe 2010, 7:509-515.
14. van der Meijden E., Janssens R.W., Lauber C., Bouwes Bavinck J.N., Gorbalenya A.E., Feltkamp M.C. Discovery of a new human polyomavirus associated with trichodysplasia spinulosa in an immunocompromized patient. PLoS Pathog. 2010, 6:e1001024.
15. Scuda N., Hofmann J., Calvignac-Spencer S., Ruprecht K., Liman P., Kuhn J., et al. A novel human polyomavirus closely related to the african green monkey-derived lymphotropic polyomavirus. J. Virol. 2011, 85:4586-4590.
16. Buck C.B., Phan G.Q., Raiji M.T., Murphy P.M., McDermott D.H., McBride A.A. Complete genome sequence of a tenth human polyomavirus. J. Virol. 2012, 86:10887.
17. Siebrasse E.A., Reyes A., Lim E.S., Zhao G., Mkakosya R.S., Manary M.J., et al. Identification of MW polyomavirus, a novel polyomavirus in human stool. J. Virol. 2012, 86:10321-10326.
18. Yu G., Greninger A.L., Isa P., Phan T.G., Martinez M.A., de la Luz Sanchez M., et al. Discovery of a novel polyomavirus in acute diarrheal samples from children. PLoS One 2012, 7:e49449.
19. Korup S., Rietscher J., Calvignac-Spencer S., Trusch F., Hofmann J., Moens U., et al. Identification of a novel human polyomavirus in organs of the gastrointestinal tract. PLoS One. 2013, 8:e58021.
20. Lim E.S., Reyes A., Antonio M., Saha D., Ikumapayi U.N., Adeyemi M., et al. Discovery of STL polyomavirus, a polyomavirus of ancestral recombinant origin that encodes a unique T antigen by alternative splicing. Virology 2013, 436:295-303.
21. Mishra N., Pereira M., Rhodes R.H., An P., Pipas J.M., Jain K., et al. Identification of a novel polyomavirus in a pancreatic transplant recipient with retinal blindness and vasculitic myopathy. J. Infect. Dis. 2014, 210:1595-1599.
22. Pastrana D.V., Fitzgerald P.C., Phan G.Q., Raiji M.T., Murphy P.M., McDermott D.H., et al. A divergent variant of the eleventh human polyomavirus species saint louis polyomavirus. Genome Announc. 2013, 1(5):e00812-e00813.
23. Feltkamp M.C., Kazem S., van der Meijden E., Lauber C., Gorbalenya A.E. From Stockholm to Malawi: recent developments in studying human polyomaviruses. J. Gen. Virol. 2013, 94:482-496.
24. DeCaprio J.A., Garcea R.L. A cornucopia of human polyomaviruses. Nat. Rev. Microbiol. 2013, 11:264-276.
25. Li K., Guo J., Zhao R., Xue Y., Chen L., Yang J., et al. The prevalence of 10 human polyomaviruses in fecal samples from children with acute gastroenteritis: a case-control study. J. Clin. Microbiol. 2013, 51:3107-3109.
26. Peng J., Gao L., Guo J., Wang T., Wang L., Yao Q., et al. Type-specific detection of 30 oncogenic human papillomaviruses by genotyping both e6 and l1 genes. J. Clin. Microbiol. 2013, 51:402-408.
27. Peng J., Yang F., Xiong Z., Guo J., Du J., Hu Y., et al. Sensitive and rapid detection of viruses associated with hand foot and mouth disease using multiplexed MALDI-TOF analysis. J. Clin. Virol. 2013, 56:170-174.
28. Peng J., Wang T., Zhu H., Guo J., Li K., Yao Q., et al. Multiplex PCR/mass spectrometry screening of biological carcinogenic agents in human mammary tumors. J. Clin. Virol. 2014, 61:255-259.
29. Cheng W.X., Jin Y., Duan Z.J., Xu Z.Q., Qi H.M., Zhang Q., et al. Human bocavirus in children hospitalized for acute gastroenteritis: a case-control study. Clin. Infect. Dis. 2008, 47:161-167.
30. Yan H., Yagyu F., Okitsu S., Nishio O., Ushijima H. Detection of norovirus (GI, GII), Sapovirus and astrovirus in fecal samples using reverse transcription single-round multiplex PCR. J. Virol. Methods 2003, 114:37-44.
31. Phan T.G., Nishimura S., Okame M., Nguyen T.A., Khamrin P., Okitsu S., et al. Virus diversity and an outbreak of group C rotavirus among infants and children with diarrhea in Maizuru city, Japan during 2002-2003. J. Med. Virol. 2004, 74:173-179.
32. Tamura K., Stecher G., Peterson D., Filipski A., Kumar S. MEGA6: Molecular evolutionary genetics analysis version 6.0. Mol. Biol. Evol. 2013, 30:2725-2729.
33. Babakir-Mina M., Ciccozzi M., Alteri C., Polchi P., Picardi A., Greco F., et al. Excretion of the novel polyomaviruses KI and WU in the stool of patients with hematological disorders. J. Med. Virol. 2009, 81:1668-1673.
34. Kantola K., Sadeghi M., Lahtinen A., Koskenvuo M., Aaltonen L.M., Mottonen M., et al. Merkel cell polyomavirus DNA in tumor-free tonsillar tissues and upper respiratory tract samples: implications for respiratory transmission and latency. J. Clin. Virol. 2009, 45:292-295.
35. Mourez T., Bergeron A., Ribaud P., Scieux C., de Latour R.P., Tazi A., et al. Polyomaviruses KI. and WU in immunocompromised patients with respiratory disease. Emerg. Infect. Dis. 2009, 15:107-109.
36. Ren L., Gonzalez R., Xu X., Li J., Zhang J., Vernet G., et al. WU polyomavirus in fecal specimens of children with acute gastroenteritis, China. Emerg. Infect. Dis. 2009, 15:134-135.
37. Siebrasse E.A., Bauer I., Holtz L.R., Le B.M., Lassa-Claxton S., Canter C., et al. Human polyomaviruses in children undergoing transplantation, United States, 2008-2010. Emerg. Infect. Dis. 2012, 18:1676-1679.
38. Vanchiere J.A., Abudayyeh S., Copeland C.M., Lu L.B., Graham D.Y., Butel J.S. Polyomavirus shedding in the stool of healthy adults. J. Clin. Microbiol. 2009, 47:2388-2391.
39. van der Meijden E., Wunderink H.F., van der Blij-de Brouwer C.S., Zaaijer H.L., Rotmans J.I., Bavinck J.N., et al. Human polyomavirus 9 infection in kidney transplant patients. Emerg. Infect. Dis. 2014, 20:991-999.
40. Ho J., Jedrych J.J., Feng H., Natalie A.A., Grandinetti L., Mirvish E., et al. Human polyomavirus 7-associated pruritic rash and viremia in transplant recipients. J. Infect. Dis. 2014, 10.1093/infdis/jiu524.
41. De Gascun C.F., Carr M.J. Human polyomavirus reactivation: disease pathogenesis and treatment approaches. Clin. Dev. Immunol. 2013, 2013:373579.
42. Scuda N., Madinda N.F., Akoua-Koffi C., Adjogoua E.V., Wevers D., Hofmann J., et al. Novel polyomaviruses of nonhuman primates: genetic and serological predictors for the existence of multiple unknown polyomaviruses within the human population. PLoS Pathog. 2013, 9:e1003429.