Sustainable deployment of QTLs conferring quantitative resistance to crops: First lessons from a stochastic model

New Phytologist

Volumn 206, Issue 3, 2015, Pages 1163-1171

  Bourget, Romain ^a,b   Chaumont, Loïc ^a   Durel, Charles Eric ^a,b   Sapoukhina, Natalia ^a,b  

^a UNIVERSITÉ D'ANGERS   (France)

^b Universite d'Angers   (France)

Author keywords

Birth and death process; Breeding strategies; Continuous adaptive dynamics; Partial resistance; QTL erosion; Resistance durability

Indexed keywords

ADAPTATION; COLONIZATION; DISEASE RESISTANCE; LESION; QUANTITATIVE ANALYSIS; REPRODUCTIVE STRATEGY; STOCHASTICITY; SUSTAINABLE DEVELOPMENT;

ADAPTATION; BIOLOGICAL MODEL; CROP; DISEASE RESISTANCE; GENETICS; HOST PATHOGEN INTERACTION; IMMUNOLOGY; MARKOV CHAIN; PHYSIOLOGY; QUANTITATIVE TRAIT LOCUS;

ADAPTATION, PHYSIOLOGICAL; CROPS, AGRICULTURAL; DISEASE RESISTANCE; HOST-PATHOGEN INTERACTIONS; MODELS, BIOLOGICAL; QUANTITATIVE TRAIT LOCI; STOCHASTIC PROCESSES;

EID: 84926518935     PISSN: 0028646X     EISSN: 14698137     Source Type: Journal    
DOI: 10.1111/nph.13295     Document Type: Article

References (42)

1. Ainsworth G. 1981. Introduction to the history of plant pathology. Cambridge, UK: Cambridge University Press.
2. Allen LJ. 2003. An introduction to stochastic processes with biology applications. Upper Saddle River, NJ, USA: Prentice Hall.
3. Andrivon D, Pilet F, Montarry J, Hafidi M, Corbire R, Achbani EH, Pell R, Ellissche D. 2007. Adaptation of Phytophthora infestans to partial resistance in potato: evidence from French and Moroccan populations. Phytopathology 97: 338-343.
4. Azzimonti G. 2012. Diversification de la résistance quantitative la rouille brune du blé, à partir de la caractérisation des composantes de la résistance. PhD thesis, AgroParisTECH, Paris, France.
5. Azzimonti G, Lannou C, Sache I, Goyeau H. 2013. Components of quantitative resistance to leaf rust in wheat cultivars: diversity, variability and specificity. Plant Pathology 62: 970-981.
6. Barton NH. 1995. Linkage and the limits to natural selection. Genetics 140: 821-841.
7. van den Berg F, Lannou C, Gilligan CA, van den Bosch F. 2013. Quantitative resistance can lead to evolutionary changes in traits not targeted by the resistance QTLs. Evolutionary Applications 7: 370-380.
8. van den Bosch F, Gilligan C. 2003. Measures of durability of resistance. Phytopathology 93: 616-625.
9. Bourget R, Chaumont L, Sapoukhina N. 2013. Timing of pathogen adaptation to a multicomponent treatment. PLoS ONE 8: e71926.
10. van Boven M, Mooi FR, Schellekens JF, de Melker HE, Kretzschmar M. 2005. Pathogen adaptation under imperfect vaccination: implications for pertussis. Proceedings of the Royal Society B: Biological Sciences 272: 1617-1624.
11. Brun H, Chèvre AM, Fitt BD, Powers S, Besnard AL, Ermel M, Huteau V, Marquer B, Eber F, Renard M, Andrivon D. 2010. Quantitative resistance increases the durability of qualitative resistance to Leptosphaeria maculans in Brassica napus. New Phytologist 185: 285-299.
12. Caffier V, Lasserre-Zuber P, Giraud M, Lascostes M, Stievenard R, Expert P, Le Cam B, Durel CE. 2014. Erosion of quantitative host resistance in the apple × Venturia inaequalis pathosystem. Infection, Genetics and Evolution 27: 481-489.
13. Champagnat N, Ferrière R, Méléard S. 2006. Unifying evolutionary dynamics: from individual stochastic processes to macroscopic models. Theoretical Population Biology 69: 297-321.
14. Cowger C, Mundt CC. 2002. Aggressiveness of Mycosphaerella graminicola isolates from susceptible and partially resistant wheat cultivars. Phytopathology 92: 624-630.
15. Dangl JL, Jones JDG. 2001. Plant pathogens and integrated defence responses to infection. Nature 411: 826-833.
16. Ebert D. 1998. Experimental evolution of parasites. Science 282: 1432-1436.
17. Flor HH. 1971. Current status of the gene-for-gene concept. Annual Review of Phytopathology 9: 275-296.
18. Gandon S, Day T. 2007. The evolutionary epidemiology of vaccination. Journal of the Royal Society Interface 4: 803-817.
19. Gandon S, Mackinnon MJ, Nee S, Read AF. 2001. Imperfect vaccines and the evolution of pathogen virulence. Nature 414: 751-756.
20. Gandon S, Michalakis Y. 2000. Evolution of parasite virulence against qualitative or quantitative host resistance. Proceedings of the Royal Society of London. Series B: Biological Sciences 267: 985-990.
21. Gillespie DT. 1977. Exact stochastic simulation of coupled chemical reactions. Journal of Physical Chemistry 81: 2340-2361.
22. Hoffmann AA, Sgro CM. 2011. Climate change and evolutionary adaptation. Nature 470: 479-485.
23. Iacono GL, van den Bosch F, Paveley N. 2012. The evolution of plant pathogens in response to host resistance: factors affecting the gain from deployment of qualitative and quantitative resistance. Journal of Theoretical Biology 304: 152-163.
24. Lannou C. 2012. Variation and selection of quantitative traits in plant pathogens. Annual Review of Phytopathology 50: 319-338.
25. Lehman J, Shaner G. 1996. Genetic variation in latent period among isolates of Puccinia recondita f. sp. tritici on partially resistant wheat cultivars. Phytopathology 86: 633-641.
26. Martin G, Lenormand T. 2006. The fitness effect of mutations across environments: a survey in light of fitness landscape models. Evolution 60: 2413-2427.
27. Massad E, Coutinho F, Burattini M, Lopez L, Struchiner C. 2006. The impact of imperfect vaccines on the evolution of HIV virulence. Medical Hypotheses 66: 907-911.
28. McDonald BA, Linde C. 2002. Pathogen population genetics, evolutionary potential, and durable resistance. Annual Review of Phytopathology 40: 349-379.
29. Metzgar D, Wills C. 2000. Evolutionary changes in mutation rates and spectra and their influence on the adaptation of pathogens. Microbes and Infection 2: 1513-1522.
30. Moury B, Morel C, Johansen E, Guilbaud L, Souche S, Ayme V, Caranta C, Palloix A, Jacquemond M. 2004. Mutations in potato virus Y genome-linked protein determine virulence toward recessive resistances in Capsicum annuum and Lycopersicon hirsutum. Molecular Plant-Microbe Interactions 17: 322-329.
31. Mundt C, Cowger C, Garrett K. 2002. Relevance of integrated disease management to resistance durability. Euphytica 124: 245-252.
32. Nair M, Pollett P. 1993. On the relationship between μ-invariant measures and quasistationary distributions for continuous-time Markov chains. Advances in Applied Probability 25: 82-102.
33. Novella IS, Duarte EA, Elena SF, Moya A, Domingo E, Holland JJ. 1995. Exponential increases of RNA virus fitness during large population transmissions. Proceedings of the National Academy of Sciences, USA 92: 5841-5844.
34. Novozhilov AS, Karev GP, Koonin EV. 2006. Biological applications of the theory of birth-and-death processes. Briefings in Bioinformatics 7: 70-85.
35. Otto S, Day T. 2007. A biologist's guide to mathematical modeling in ecology and evolution, vol. 13. Princeton, NJ, USA: Princeton University Press.
36. Palloix A, Ayme V, Moury B. 2009. Durability of plant major resistance genes to pathogens depends on the genetic background, experimental evidence and consequences for breeding strategies. New Phytologist 183: 190-199.
37. Pariaud B, Ravigné V, Halkett F, Goyeau H, Carlier J, Lannou C. 2009. Aggressiveness and its role in the adaptation of plant pathogens. Plant Pathology 58: 409-424.
38. Poland JA, Kurti BPJ, Wisser RJ, Pratt RC, Nelson RJ. 2009. Shades of gray: the world of quantitative disease resistance. Trends in Plant Science 14: 21-29.
39. Rouzine IM, Brunet E, Wilke CO. 2008. The traveling-wave approach to asexual evolution: Muller's ratchet and speed of adaptation. Theoretical Population Biology 73: 24-46.
40. Sanjuán R. 2010. Mutational fitness effects in RNA and single-stranded DNA viruses: common patterns revealed by site-directed mutagenesis studies. Philosophical Transactions of the Royal Society B: Biological Sciences 365: 1975-1982.
41. St.Clair DA. 2010. Quantitative disease resistance and quantitative resistance loci in breeding. Annual Review of Phytopathology 48: 247-268.
42. Young ND. 1996. QTL mapping and quantitative disease resistance in plants. Annual Review of Phytopathology 34: 479-501.