메뉴 건너뛰기




Volumn 219, Issue , 2015, Pages 51-61

Propidium monoazide reverse transcriptase PCR and RT-qPCR for detecting infectious enterovirus and norovirus

Author keywords

Enteric virus; Norovirus; Propidium monoazide; UV

Indexed keywords

CHLORINE; DYE; PROPIDIUM MONOAZIDE; UNCLASSIFIED DRUG; VIRUS RNA; AZIDE; PROPIDIUM IODIDE;

EID: 84926430334     PISSN: 01660934     EISSN: 18790984     Source Type: Journal    
DOI: 10.1016/j.jviromet.2015.02.020     Document Type: Article
Times cited : (65)

References (62)
  • 1
    • 38349127571 scopus 로고    scopus 로고
    • Evaluation of murine norovirus, feline calicivirus, poliovirus, and MS2 as surrogates for human norovirus in a model of viral persistence in surface water and groundwater
    • Bae J., Schwab K.J. Evaluation of murine norovirus, feline calicivirus, poliovirus, and MS2 as surrogates for human norovirus in a model of viral persistence in surface water and groundwater. Appl. Environ. Microbiol. 2008, 74:477-484. 10.1128/AEM.02095-06.
    • (2008) Appl. Environ. Microbiol. , vol.74 , pp. 477-484
    • Bae, J.1    Schwab, K.J.2
  • 2
    • 0033756020 scopus 로고    scopus 로고
    • Norwalk-like virus sequences detected by reverse transcription-polymerase chain reaction in mineral waters imported into or bottled in Switzerland
    • Beuret C., Kohler D., Luthi T. Norwalk-like virus sequences detected by reverse transcription-polymerase chain reaction in mineral waters imported into or bottled in Switzerland. J. Food Prot. 2000, 63:1576-1582.
    • (2000) J. Food Prot. , vol.63 , pp. 1576-1582
    • Beuret, C.1    Kohler, D.2    Luthi, T.3
  • 4
    • 84930476504 scopus 로고    scopus 로고
    • Viruses in nondisinfected drinking water from municipal wells and community incidence of acute gastrointestinal illness
    • Borchardt M.A., Spencer S.K., Kieke B.A., Lambertini E., Loge F.J. Viruses in nondisinfected drinking water from municipal wells and community incidence of acute gastrointestinal illness. Environ. Health Perspect. 2012, 120:1272-1279. 10.1289/ehp.1104499.
    • (2012) Environ. Health Perspect. , vol.120 , pp. 1272-1279
    • Borchardt, M.A.1    Spencer, S.K.2    Kieke, B.A.3    Lambertini, E.4    Loge, F.J.5
  • 5
    • 0032148957 scopus 로고    scopus 로고
    • Human enteric viruses in the water environment: a minireview
    • Bosch A. Human enteric viruses in the water environment: a minireview. Int. Microbiol. 1998, 1:191-196.
    • (1998) Int. Microbiol. , vol.1 , pp. 191-196
    • Bosch, A.1
  • 6
    • 70350503115 scopus 로고    scopus 로고
    • Cryptosporidium propidium monoazide-PCR, a molecular biology-based technique for genotyping of viable Cryptosporidium oocysts
    • Brescia C.C., Griffin S.M., Ware M.W., Varughese E.A., Egorov A.I., Villegas E.N. Cryptosporidium propidium monoazide-PCR, a molecular biology-based technique for genotyping of viable Cryptosporidium oocysts. Appl. Environ. Microbiol. 2009, 75:6856-6863. 10.1128/AEM.00540-09.
    • (2009) Appl. Environ. Microbiol. , vol.75 , pp. 6856-6863
    • Brescia, C.C.1    Griffin, S.M.2    Ware, M.W.3    Varughese, E.A.4    Egorov, A.I.5    Villegas, E.N.6
  • 8
    • 33751243056 scopus 로고    scopus 로고
    • Surrogates for the study of norovirus stability and inactivation in the environment: a comparison of murine norovirus and feline calicivirus
    • Cannon J.L., Papafragkou E., Park G.W., Osborne J., Jaykus L.A., Vinje J. Surrogates for the study of norovirus stability and inactivation in the environment: a comparison of murine norovirus and feline calicivirus. J. Food Prot. 2006, 69:2761-2765.
    • (2006) J. Food Prot. , vol.69 , pp. 2761-2765
    • Cannon, J.L.1    Papafragkou, E.2    Park, G.W.3    Osborne, J.4    Jaykus, L.A.5    Vinje, J.6
  • 9
    • 79955750320 scopus 로고    scopus 로고
    • Capsid and infectivity in virus detection
    • Cliver D.O. Capsid and infectivity in virus detection. Food Environ. Virol. 2009, 1:123-128. 10.1007/s12560-009-9020-y.
    • (2009) Food Environ. Virol. , vol.1 , pp. 123-128
    • Cliver, D.O.1
  • 10
    • 84884793059 scopus 로고    scopus 로고
    • Discrimination of infectious hepatitis A virus and rotavirus by combining dyes and surfactants with RT-qPCR
    • Coudray-Meunier C., Fraisse A., Martin-Latil S., Guillier L., Perelle S. Discrimination of infectious hepatitis A virus and rotavirus by combining dyes and surfactants with RT-qPCR. BMC Microbiol. 2013, 13:216. 10.1186/1471-2180-13-216.
    • (2013) BMC Microbiol. , vol.13 , pp. 216
    • Coudray-Meunier, C.1    Fraisse, A.2    Martin-Latil, S.3    Guillier, L.4    Perelle, S.5
  • 11
    • 76649139147 scopus 로고    scopus 로고
    • Inactivation of adenoviruses, enteroviruses, and murine norovirus in water by free chlorine and monochloramine
    • Cromeans T.L., Kahler A.M., Hill V.R. Inactivation of adenoviruses, enteroviruses, and murine norovirus in water by free chlorine and monochloramine. Appl. Environ. Microbiol. 2010, 76:1028-1033. 10.1128/AEM.01342-09.
    • (2010) Appl. Environ. Microbiol. , vol.76 , pp. 1028-1033
    • Cromeans, T.L.1    Kahler, A.M.2    Hill, V.R.3
  • 12
    • 37349023992 scopus 로고    scopus 로고
    • Evaluation of removal of noroviruses during wastewater treatment, using real-time reverse transcription-PCR: different behaviors of genogroups I and II
    • da Silva A.K., Le Saux J.C., Parnaudeau S., Pommepuy M., Elimelech M., Le Guyader F.S. Evaluation of removal of noroviruses during wastewater treatment, using real-time reverse transcription-PCR: different behaviors of genogroups I and II. Appl. Environ. Microbiol. 2007, 73:7891-7897. 10.1128/AEM.01428-07.
    • (2007) Appl. Environ. Microbiol. , vol.73 , pp. 7891-7897
    • da Silva, A.K.1    Le Saux, J.C.2    Parnaudeau, S.3    Pommepuy, M.4    Elimelech, M.5    Le Guyader, F.S.6
  • 13
    • 0022654462 scopus 로고
    • Optimization of the BGM cell line culture and viral assay procedures for monitoring viruses in the environment
    • Dahling D.R., Wright B.A. Optimization of the BGM cell line culture and viral assay procedures for monitoring viruses in the environment. Appl. Environ. Microbiol. 1986, 51:790-812.
    • (1986) Appl. Environ. Microbiol. , vol.51 , pp. 790-812
    • Dahling, D.R.1    Wright, B.A.2
  • 15
    • 79551481195 scopus 로고    scopus 로고
    • Molecular indications of protein damage in adenoviruses after UV disinfection
    • Eischeid A.C., Linden K.G. Molecular indications of protein damage in adenoviruses after UV disinfection. Appl. Environ. Microbiol. 2011, 77:1145-1147. 10.1128/AEM.00403-10.
    • (2011) Appl. Environ. Microbiol. , vol.77 , pp. 1145-1147
    • Eischeid, A.C.1    Linden, K.G.2
  • 16
    • 77955093710 scopus 로고    scopus 로고
    • Discrimination of infectious bacteriophage T4 virus by propidium monoazide real-time PCR
    • Fittipaldi M., Rodriguez N.J., Codony F., Adrados B., Penuela G.A., Morato J. Discrimination of infectious bacteriophage T4 virus by propidium monoazide real-time PCR. J. Virol. Methods 2010, 168:228-232. 10.1016/j.jviromet.2010.06.011.
    • (2010) J. Virol. Methods , vol.168 , pp. 228-232
    • Fittipaldi, M.1    Rodriguez, N.J.2    Codony, F.3    Adrados, B.4    Penuela, G.A.5    Morato, J.6
  • 17
    • 0037642121 scopus 로고    scopus 로고
    • A multiplex reverse transcription-PCR method for detection of human enteric viruses in groundwater
    • Fout G.S., Martinson B.C., Moyer M.W., Dahling D.R. A multiplex reverse transcription-PCR method for detection of human enteric viruses in groundwater. Appl. Environ. Microbiol. 2003, 69:3158-3164. 10.1128/AEM.69.6.3158-3164.2003.
    • (2003) Appl. Environ. Microbiol. , vol.69 , pp. 3158-3164
    • Fout, G.S.1    Martinson, B.C.2    Moyer, M.W.3    Dahling, D.R.4
  • 18
    • 0036793754 scopus 로고    scopus 로고
    • Comparative inactivation of enteroviruses and adenovirus 2 by UV light
    • Gerba C.P., Gramos D.M., Nwachuku N. Comparative inactivation of enteroviruses and adenovirus 2 by UV light. Appl. Environ. Microbiol. 2002, 68:5167-5169. 10.1128/AEM.68.10.5167-5169.2002.
    • (2002) Appl. Environ. Microbiol. , vol.68 , pp. 5167-5169
    • Gerba, C.P.1    Gramos, D.M.2    Nwachuku, N.3
  • 19
    • 79251612167 scopus 로고    scopus 로고
    • Tangential-flow ultrafiltration with integrated inhibition detection for recovery of surrogates and human pathogens from large-volume source water and finished drinking water
    • Gibson K.E., Schwab K.J. Tangential-flow ultrafiltration with integrated inhibition detection for recovery of surrogates and human pathogens from large-volume source water and finished drinking water. Appl. Environ. Microbiol. 2011, 77:385-391. 10.1128/AEM.01164-10.
    • (2011) Appl. Environ. Microbiol. , vol.77 , pp. 385-391
    • Gibson, K.E.1    Schwab, K.J.2
  • 20
    • 77249179632 scopus 로고    scopus 로고
    • Ethidium monoazide does not inhibit RT-PCR amplification of nonviable avian influenza RNA
    • Graiver D.A., Saunders S.E., Topliff C.L., Kelling C.L., Bartelt-Hunt S.L. Ethidium monoazide does not inhibit RT-PCR amplification of nonviable avian influenza RNA. J. Virol. Methods 2010, 164:51-54. 10.1016/j.jviromet.2009.11.024.
    • (2010) J. Virol. Methods , vol.164 , pp. 51-54
    • Graiver, D.A.1    Saunders, S.E.2    Topliff, C.L.3    Kelling, C.L.4    Bartelt-Hunt, S.L.5
  • 23
    • 84872689096 scopus 로고    scopus 로고
    • Comparing human norovirus surrogates: murine norovirus and Tulane virus
    • Hirneisen K.A., Kniel K.E. Comparing human norovirus surrogates: murine norovirus and Tulane virus. J. Food Prot. 2013, 76:139-143. 10.4315/0362-028X.JFP-12-216.
    • (2013) J. Food Prot. , vol.76 , pp. 139-143
    • Hirneisen, K.A.1    Kniel, K.E.2
  • 24
    • 1442325313 scopus 로고    scopus 로고
    • Norovirus outbreak among primary schoolchildren who had played in a recreational water fountain
    • Hoebe C.J., Vennema H., de Roda Husman A.M., van Duynhoven Y.T. Norovirus outbreak among primary schoolchildren who had played in a recreational water fountain. J. Infect. Dis. 2004, 189:699-705. 10.1086/381534.
    • (2004) J. Infect. Dis. , vol.189 , pp. 699-705
    • Hoebe, C.J.1    Vennema, H.2    de Roda Husman, A.M.3    van Duynhoven, Y.T.4
  • 26
    • 0026649563 scopus 로고
    • Expression, self-assembly, and antigenicity of the Norwalk virus capsid protein
    • Jiang X., Wang M., Graham D.Y., Estes M.K. Expression, self-assembly, and antigenicity of the Norwalk virus capsid protein. J. Virol. 1992, 66:6527-6532.
    • (1992) J. Virol. , vol.66 , pp. 6527-6532
    • Jiang, X.1    Wang, M.2    Graham, D.Y.3    Estes, M.K.4
  • 30
    • 84865320384 scopus 로고    scopus 로고
    • Using propidium monoazide to distinguish between viable and nonviable bacteria MS2 and murine norovirus
    • Kim S.Y., Ko G. Using propidium monoazide to distinguish between viable and nonviable bacteria MS2 and murine norovirus. Lett. Appl. Microbiol. 2012, 55:182-188. 10.1111/j.1472-765X. 2012.03276.x.
    • (2012) Lett. Appl. Microbiol. , vol.55 , pp. 182-188
    • Kim, S.Y.1    Ko, G.2
  • 31
    • 77953482823 scopus 로고    scopus 로고
    • Chlorine inactivation of human norovirus, murine norovirus and poliovirus in drinking water
    • Kitajima M., Tohya Y., Matsubara K., Haramoto E., Utagawa E., Katayama H. Chlorine inactivation of human norovirus, murine norovirus and poliovirus in drinking water. Lett. Appl. Microbiol. 2010, 51:119-121. 10.1111/j.1472-765X.2010.02869.x.
    • (2010) Lett. Appl. Microbiol. , vol.51 , pp. 119-121
    • Kitajima, M.1    Tohya, Y.2    Matsubara, K.3    Haramoto, E.4    Utagawa, E.5    Katayama, H.6
  • 32
    • 42049109690 scopus 로고    scopus 로고
    • Inactivation and UV disinfection of murine norovirus with TiO2 under various environmental conditions
    • Lee J., Zoh K., Ko G. Inactivation and UV disinfection of murine norovirus with TiO2 under various environmental conditions. Appl. Environ. Microbiol. 2008, 74:2111-2117. 10.1128/AEM.02442-07.
    • (2008) Appl. Environ. Microbiol. , vol.74 , pp. 2111-2117
    • Lee, J.1    Zoh, K.2    Ko, G.3
  • 34
    • 34249913875 scopus 로고    scopus 로고
    • Surveillance for waterborne disease and outbreaks associated with drinking water and water not intended for drinking - United States, 2003-2004
    • Liang J.L., Dziuban E.J., Craun G.F., Hill V., Moore M.R., Gelting R.J., Calderon R.L., Beach M.J., Roy S.L. Surveillance for waterborne disease and outbreaks associated with drinking water and water not intended for drinking - United States, 2003-2004. MMWR Surveill. Summ. 2006, 55:31-65.
    • (2006) MMWR Surveill. Summ. , vol.55 , pp. 31-65
    • Liang, J.L.1    Dziuban, E.J.2    Craun, G.F.3    Hill, V.4    Moore, M.R.5    Gelting, R.J.6    Calderon, R.L.7    Beach, M.J.8    Roy, S.L.9
  • 37
    • 33748746842 scopus 로고    scopus 로고
    • Comparison of propidium monoazide with ethidium monoazide for differentiation of live vs. dead bacteria by selective removal of DNA from dead cells
    • Nocker A., Cheung C.Y., Camper A.K. Comparison of propidium monoazide with ethidium monoazide for differentiation of live vs. dead bacteria by selective removal of DNA from dead cells. J. Microbiol. Methods 2006, 67:310-320. 10.1016/j.mimet.2006.04.015.
    • (2006) J. Microbiol. Methods , vol.67 , pp. 310-320
    • Nocker, A.1    Cheung, C.Y.2    Camper, A.K.3
  • 38
    • 60049083963 scopus 로고    scopus 로고
    • Selective detection of live bacteria combining propidium monoazide sample treatment with microarray technology
    • Nocker A., Mazza A., Masson L., Camper A.K., Brousseau R. Selective detection of live bacteria combining propidium monoazide sample treatment with microarray technology. J. Microbiol. Methods 2009, 76:253-261. pii:S0167-7012(08)00417-X. 10.1016/j.mimet.2008.11.004.
    • (2009) J. Microbiol. Methods , vol.76 , pp. 253-261
    • Nocker, A.1    Mazza, A.2    Masson, L.3    Camper, A.K.4    Brousseau, R.5
  • 39
    • 34548261775 scopus 로고    scopus 로고
    • Use of propidium monoazide for live/dead distinction in microbial ecology
    • Nocker A., Sossa-Fernandez P., Burr M.D., Camper A.K. Use of propidium monoazide for live/dead distinction in microbial ecology. Appl. Environ. Microbiol. 2007, 73:5111-5117. 10.1128/AEM.02987-06.
    • (2007) Appl. Environ. Microbiol. , vol.73 , pp. 5111-5117
    • Nocker, A.1    Sossa-Fernandez, P.2    Burr, M.D.3    Camper, A.K.4
  • 40
    • 0036089796 scopus 로고    scopus 로고
    • Pretreatment to avoid positive RT-PCR results with inactivated viruses
    • Nuanualsuwan S., Cliver D.O. Pretreatment to avoid positive RT-PCR results with inactivated viruses. J. Virol. Methods 2002, 104:217-225.
    • (2002) J. Virol. Methods , vol.104 , pp. 217-225
    • Nuanualsuwan, S.1    Cliver, D.O.2
  • 43
    • 37349080565 scopus 로고    scopus 로고
    • Enumeration of viable Listeria monocytogenes cells by real-time PCR with propidium monoazide and ethidium monoazide in the presence of dead cells
    • Pan Y., Breidt F. Enumeration of viable Listeria monocytogenes cells by real-time PCR with propidium monoazide and ethidium monoazide in the presence of dead cells. Appl. Environ. Microbiol. 2007, 73:8028-8031. 10.1128/AEM.01198-07.
    • (2007) Appl. Environ. Microbiol. , vol.73 , pp. 8028-8031
    • Pan, Y.1    Breidt, F.2
  • 44
    • 77954287895 scopus 로고    scopus 로고
    • Use of propidium monoazide in reverse transcriptase PCR to distinguish between infectious and noninfectious enteric viruses in water samples
    • Parshionikar S., Laseke I., Fout G.S. Use of propidium monoazide in reverse transcriptase PCR to distinguish between infectious and noninfectious enteric viruses in water samples. Appl. Environ. Microbiol. 2010, 76:4318-4326. 10.1128/AEM.02800-09.
    • (2010) Appl. Environ. Microbiol. , vol.76 , pp. 4318-4326
    • Parshionikar, S.1    Laseke, I.2    Fout, G.S.3
  • 45
    • 4444228253 scopus 로고    scopus 로고
    • Development of homologous viral internal controls for use in RT-PCR assays of waterborne enteric viruses
    • Parshionikar S.U., Cashdollar J., Fout G.S. Development of homologous viral internal controls for use in RT-PCR assays of waterborne enteric viruses. J. Virol. Methods 2004, 121:39-48.
    • (2004) J. Virol. Methods , vol.121 , pp. 39-48
    • Parshionikar, S.U.1    Cashdollar, J.2    Fout, G.S.3
  • 48
    • 0029930529 scopus 로고    scopus 로고
    • Detection of infectious enteroviruses by an integrated cell culture-PCR procedure
    • Reynolds K.A., Gerba C.P., Pepper I.L. Detection of infectious enteroviruses by an integrated cell culture-PCR procedure. Appl. Environ. Microbiol. 1996, 62:1424-1427.
    • (1996) Appl. Environ. Microbiol. , vol.62 , pp. 1424-1427
    • Reynolds, K.A.1    Gerba, C.P.2    Pepper, I.L.3
  • 49
    • 38449083968 scopus 로고    scopus 로고
    • Risk of waterborne illness via drinking water in the United States
    • Reynolds K.A., Mena K.D., Gerba C.P. Risk of waterborne illness via drinking water in the United States. Rev. Environ. Contam. Toxicol. 2008, 192:117-158.
    • (2008) Rev. Environ. Contam. Toxicol. , vol.192 , pp. 117-158
    • Reynolds, K.A.1    Mena, K.D.2    Gerba, C.P.3
  • 50
    • 84857652773 scopus 로고    scopus 로고
    • Discrimination of infectious hepatitis A viruses by propidium monoazide real-time RT-PCR
    • Sanchez G., Elizaquivel P., Aznar R. Discrimination of infectious hepatitis A viruses by propidium monoazide real-time RT-PCR. Food Environ. Virol. 2012, 4:21-25. 10.1007/s12560-011-9074-5.
    • (2012) Food Environ. Virol. , vol.4 , pp. 21-25
    • Sanchez, G.1    Elizaquivel, P.2    Aznar, R.3
  • 54
    • 33845523691 scopus 로고    scopus 로고
    • Inactivation of poliovirus 1 and F-specific RNA phages and degradation of their genomes by UV irradiation at 254 nanometers
    • Simonet J., Gantzer C. Inactivation of poliovirus 1 and F-specific RNA phages and degradation of their genomes by UV irradiation at 254 nanometers. Appl. Environ. Microbiol. 2006, 72:7671-7677. 10.1128/AEM.01106-06.
    • (2006) Appl. Environ. Microbiol. , vol.72 , pp. 7671-7677
    • Simonet, J.1    Gantzer, C.2
  • 55
    • 34248585861 scopus 로고    scopus 로고
    • Etiological role of viruses in outbreaks of acute gastroenteritis in The Netherlands from 1994 through 2005
    • Svraka S., Duizer E., Vennema H., de Bruin E., van der Veer B., Dorresteijn B., Koopmans M. Etiological role of viruses in outbreaks of acute gastroenteritis in The Netherlands from 1994 through 2005. J. Clin. Microbiol. 2007, 45:1389-1394. 10.1128/JCM.02305-06.
    • (2007) J. Clin. Microbiol. , vol.45 , pp. 1389-1394
    • Svraka, S.1    Duizer, E.2    Vennema, H.3    de Bruin, E.4    van der Veer, B.5    Dorresteijn, B.6    Koopmans, M.7
  • 57
    • 38049016343 scopus 로고    scopus 로고
    • Quantifying fungal viability in air and water samples using quantitative PCR after treatment with propidium monoazide (PMA)
    • Vesper S., McKinstry C., Hartmann C., Neace M., Yoder S., Vesper A. Quantifying fungal viability in air and water samples using quantitative PCR after treatment with propidium monoazide (PMA). J. Microbiol. Methods 2008, 72:180-184. 10.1016/j.mimet.2007.11.017.
    • (2008) J. Microbiol. Methods , vol.72 , pp. 180-184
    • Vesper, S.1    McKinstry, C.2    Hartmann, C.3    Neace, M.4    Yoder, S.5    Vesper, A.6
  • 59
    • 33646718792 scopus 로고    scopus 로고
    • Murine norovirus: a model system to study norovirus biology and pathogenesis
    • Wobus C.E., Thackray L.B., Virgin H.W.t. Murine norovirus: a model system to study norovirus biology and pathogenesis. J. Virol. 2006, 80:5104-5112. 10.1128/JVI.02346-05.
    • (2006) J. Virol. , vol.80 , pp. 5104-5112
    • Wobus, C.E.1    Thackray, L.B.2    Virgin, H.3
  • 62
    • 73949096807 scopus 로고    scopus 로고
    • Molecular epidemiology of genogroup II-genotype 4 noroviruses in the United States between 1994 and 2006
    • Zheng D.P., Widdowson M.A., Glass R.I., Vinje J. Molecular epidemiology of genogroup II-genotype 4 noroviruses in the United States between 1994 and 2006. J. Clin. Microbiol. 2010, 48:168-177. 10.1128/JCM.01622-09.
    • (2010) J. Clin. Microbiol. , vol.48 , pp. 168-177
    • Zheng, D.P.1    Widdowson, M.A.2    Glass, R.I.3    Vinje, J.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.