메뉴 건너뛰기




Volumn 282, Issue 1806, 2015, Pages

Genome-wide association mapping in a wild avian population identifies a link between genetic and phenotypic variation in a life-history trait

Author keywords

Clutch size; Egg production; Ficedula albicollis; Fitness trait; GWAS; QTL

Indexed keywords

ADAPTATION; ANTAGONISM; BIRD; CHROMOSOME; CLUTCH SIZE; EVOLUTIONARY BIOLOGY; FITNESS; GENETIC VARIATION; GENOME; IDENTIFICATION METHOD; LIFE HISTORY TRAIT; MAPPING METHOD; PASSERINE; PHENOTYPE; POLYMORPHISM; WILD POPULATION;

EID: 84926389494     PISSN: 09628452     EISSN: 14712954     Source Type: Journal    
DOI: 10.1098/rspb.2015.0156     Document Type: Article
Times cited : (47)

References (58)
  • 4
    • 0000615185 scopus 로고    scopus 로고
    • Avian quantitative genetics
    • (eds V Nolan Jr, C Thompson, New York, NY: Kluwer Academic
    • Merila¨ J, Sheldon BC. 2001 Avian quantitative genetics. In Current ornithology (eds V Nolan Jr, C Thompson), pp. 179–255. New York, NY: Kluwer Academic.
    • (2001) Current Ornithology , pp. 179-255
    • Merila¨, J.1    Sheldon, B.C.2
  • 5
    • 0024875658 scopus 로고
    • Selection on clutch size in birds
    • Price TD, Liou L. 1989 Selection on clutch size in birds. Am. Nat. 134, 950–959. (doi:10.1086/285023)
    • (1989) Am. Nat , vol.134 , pp. 950-959
    • Price, T.D.1    Liou, L.2
  • 7
    • 0023818454 scopus 로고    scopus 로고
    • Pattern of covariation between life-history traits of European birds
    • Sæther BE. 1998 Pattern of covariation between life-history traits of European birds. Nature 331, 616–617. (doi:10.1038/331616a0)
    • (1998) Nature , vol.331 , pp. 616-617
    • Sæther, B.E.1
  • 8
    • 0023507619 scopus 로고
    • Optimizing great tit clutch size in a fluctuating environment
    • Boyce MS, Perrins CM. 1987 Optimizing great tit clutch size in a fluctuating environment. Ecology 68, 142–153. (doi:10.2307/1938814)
    • (1987) Ecology , vol.68 , pp. 142-153
    • Boyce, M.S.1    Perrins, C.M.2
  • 9
    • 0024193512 scopus 로고
    • The costs of reproduction in the collared flycatcher Ficedula albicollis
    • Gustafsson L, Sutherland WJ. 1988 The costs of reproduction in the collared flycatcher Ficedula albicollis. Nature 335, 813–815. (doi:10.1038/335813a0)
    • (1988) Nature , vol.335 , pp. 813-815
    • Gustafsson, L.1    Sutherland, W.J.2
  • 10
    • 0021594993 scopus 로고
    • The consequences of brood size for breeding blue tits I. Adult survival, weight change and the cost of reproduction
    • Nur N. 1984 The consequences of brood size for breeding blue tits I. Adult survival, weight change and the cost of reproduction. J. Anim. Ecol. 53, 479–496. (doi:10.2307/4529)
    • (1984) J. Anim. Ecol , vol.53 , pp. 479-496
    • Nur, N.1
  • 11
    • 0026540999 scopus 로고
    • Comparing evolvability and variability of quantitative traits
    • Houle D. 1992 Comparing evolvability and variability of quantitative traits. Genetics 130, 195–204.
    • (1992) Genetics , vol.130 , pp. 195-204
    • Houle, D.1
  • 12
    • 33751314398 scopus 로고    scopus 로고
    • The evolution of genetic architecture
    • Hansen TF. 2006 The evolution of genetic architecture. Annu. Rev. Ecol. Evol. Syst. 37, 123–157. (doi:10.1146/annurev.ecolsys.37.091305.110224).
    • (2006) Annu. Rev. Ecol. Evol. Syst , vol.37 , pp. 123-157
    • Hansen, T.F.1
  • 13
    • 80054759105 scopus 로고    scopus 로고
    • Molecular spandrels: Tests of adaptation at the genetic level
    • Barrett RD, Hoekstra HE. 2011 Molecular spandrels: tests of adaptation at the genetic level. Nat. Rev. Genet. 12, 767–780. (doi:10.1038/nrg3015)
    • (2011) Nat. Rev. Genet , vol.12 , pp. 767-780
    • Barrett, R.D.1    Hoekstra, H.E.2
  • 14
    • 84873868572 scopus 로고    scopus 로고
    • Evolutionary biology for the 21st century
    • Losos JB et al. 2013 Evolutionary biology for the 21st century. PLoS Biol. 11, e1001466. (doi:10.1371/journal.pbio.1001466.s004)
    • (2013) Plos Biol , pp. 11
    • Losos, J.B.1
  • 15
    • 38549103015 scopus 로고    scopus 로고
    • Combining population genomics and quantitative genetics: Finding the genes underlying ecologically important traits
    • Stinchcombe JR, Hoekstra HE. 2007 Combining population genomics and quantitative genetics: finding the genes underlying ecologically important traits. Heredity 100, 158–170. (doi:10.1038/sj.hdy.6800937)
    • (2007) Heredity , vol.100 , pp. 158-170
    • Stinchcombe, J.R.1    Hoekstra, H.E.2
  • 16
    • 40749097777 scopus 로고    scopus 로고
    • Genetic basis of fitness differences in natural populations
    • Ellegren H, Sheldon BC. 2008 Genetic basis of fitness differences in natural populations. Nature 452, 169–175. (doi:10.1038/nature06737)
    • (2008) Nature , vol.452 , pp. 169-175
    • Ellegren, H.1    Sheldon, B.C.2
  • 17
    • 34247855863 scopus 로고    scopus 로고
    • The locus of evolution: Evo devo and the genetics of adaptation
    • Hoekstra HE, Coyne JA. 2007 The locus of evolution: evo devo and the genetics of adaptation. Evolution61, 995–1016. (doi:10.1111/j.1558-5646.2007.00105.x)
    • (2007) Evolution , vol.61 , pp. 995-1016
    • Hoekstra, H.E.1    Coyne, J.A.2
  • 18
    • 0037295705 scopus 로고    scopus 로고
    • Natural selection and inheritance of breeding time and clutch size in the collared flycatcher
    • Sheldon BC, Kruuk LE, Merila J. 2003 Natural selection and inheritance of breeding time and clutch size in the collared flycatcher. Evolution 57, 406–420. (doi:10.1111/j.0014-3820.2003.tb00274.x)
    • (2003) Evolution , vol.57 , pp. 406-420
    • Sheldon, B.C.1    Kruuk, L.E.2    Merila, J.3
  • 19
    • 77955233527 scopus 로고    scopus 로고
    • Contrasting patterns of phenotypic plasticity in reproductive traits in two great tit (Parus major) populations
    • Husby A, Nussey DH, Visser ME, Wilson AJ, Sheldon BC, Kruuk LEB. 2010 Contrasting patterns of phenotypic plasticity in reproductive traits in two great tit (Parus major) populations. Evolution 64, 2221–2237. (doi:10.1111/j.1558-5646.2010.00991.x)
    • (2010) Evolution , vol.64 , pp. 2221-2237
    • Husby, A.1    Nussey, D.H.2    Visser, M.E.3    Wilson, A.J.4    Sheldon, B.C.5    Kruuk, L.6
  • 20
    • 84878427471 scopus 로고    scopus 로고
    • Genotyping-by-sequencing in ecological and conservation genomics
    • Narum SR, Buerkle CA, Davey JW, Miller MR, Hohenlohe PA. 2013 Genotyping-by-sequencing in ecological and conservation genomics. Mol. Ecol. 22, 2841–2847. (doi:10.1111/mec.12350)
    • (2013) Mol. Ecol , vol.22 , pp. 2841-2847
    • Narum, S.R.1    Buerkle, C.A.2    Davey, J.W.3    Miller, M.R.4    Hohenlohe, P.A.5
  • 21
    • 84888634025 scopus 로고    scopus 로고
    • The evolutionary genomics of birds
    • Ellegren H. 2013 The evolutionary genomics of birds. Annu. Rev. Ecol. Evol. Syst. 44, 239–259. (doi:10.1146/annurev-ecolsys-110411-160327)
    • (2013) Annu. Rev. Ecol. Evol. Syst , vol.44 , pp. 239-259
    • Ellegren, H.1
  • 22
    • 84904391192 scopus 로고    scopus 로고
    • Challenges and prospects in genome-wide quantitative trait loci mapping of standing genetic variation in natural populations
    • Schielzeth H, Husby A. 2014 Challenges and prospects in genome-wide quantitative trait loci mapping of standing genetic variation in natural populations. Ann. NY Acad. Sci. 1320, 35–57. (doi:10.1111/nyas.12397)
    • (2014) Ann. NY Acad. Sci , vol.1320 , pp. 35-57
    • Schielzeth, H.1    Husby, A.2
  • 23
    • 84888274008 scopus 로고    scopus 로고
    • Genome sequencing and population genomics in non-model organisms
    • Ellegren H. 2014 Genome sequencing and population genomics in non-model organisms. Trends Ecol. Evol. 29, 51–63. (doi:10.1016/j.tree.2013.09.008)
    • (2014) Trends Ecol. Evol , vol.29 , pp. 51-63
    • Ellegren, H.1
  • 24
    • 77950253423 scopus 로고    scopus 로고
    • Ecology and genetics of speciation in Ficedula flycatchers
    • Sætre G-P, Sæther SA. 2010 Ecology and genetics of speciation in Ficedula flycatchers. Mol. Ecol. 19, 1091–1106. (doi:10.1111/j.1365-294X.2010.04568.x)
    • (2010) Mol. Ecol , vol.19 , pp. 1091-1106
    • Sætre, G.-P.1    Sæther, S.A.2
  • 26
    • 84870297139 scopus 로고    scopus 로고
    • The genomic landscape of species divergence in Ficedula flycatchers
    • Ellegren H et al. 2012 The genomic landscape of species divergence in Ficedula flycatchers. Nature 491, 756–760. (doi:10.1038/nature11584)
    • (2012) Nature , vol.491 , pp. 756-760
    • Ellegren, H.1
  • 28
    • 84905465421 scopus 로고    scopus 로고
    • A high-density linkage map enables a second-generation collared flycatcher genome assembly and reveals the patterns of avian recombination rate variation and chromosomal evolution
    • Kawakami T, Smeds L, Backstrom N, Husby A, Qvarnstrom A, Mugal CF, Olason P, Ellegren H. 2014 A high-density linkage map enables a second-generation collared flycatcher genome assembly and reveals the patterns of avian recombination rate variation and chromosomal evolution. Mol. Ecol. 23, 4035–4058. (doi:10.1111/mec.12810)
    • (2014) Mol. Ecol , vol.23 , pp. 4035-4058
    • Kawakami, T.1    Smeds, L.2    Backstrom, N.3    Husby, A.4    Qvarnstrom, A.5    Mugal, C.F.6    Olason, P.7    Ellegren, H.8
  • 31
    • 34447324105 scopus 로고    scopus 로고
    • GenABEL: An R library for genome-wide association analysis
    • Aulchenko YS, Ripke S, Isaacs A, van Duijn CM. 2007 GenABEL: an R library for genome-wide association analysis. Bioinformatics 23, 1294–1296. (doi:10.1093/bioinformatics/btm108)
    • (2007) Bioinformatics , vol.23 , pp. 1294-1296
    • Aulchenko, Y.S.1    Ripke, S.2    Isaacs, A.3    Van Duijn, C.M.4
  • 33
    • 34548292504 scopus 로고    scopus 로고
    • PLINK: A tool set for whole-genome association and population-based linkage analyses
    • Purcell S et al. 2007 PLINK: a tool set for whole-genome association and population-based linkage analyses. Am. J. Hum. Genet. 81, 559–575. (doi:10.1086/519795)
    • (2007) Am. J. Hum. Genet , vol.81 , pp. 559-575
    • Purcell, S.1
  • 35
    • 0017288665 scopus 로고
    • A simple method for computing the inverse of a numerator relationship matrix used in prediction of breeding values
    • Henderson CR. 1976 A simple method for computing the inverse of a numerator relationship matrix used in prediction of breeding values. Biometrics 32, 69–83. (doi:10.2307/2529339)
    • (1976) Biometrics , vol.32 , pp. 69-83
    • Henderson, C.R.1
  • 36
    • 13144257707 scopus 로고    scopus 로고
    • The genetic theory of adaptation: A brief history
    • Orr HA. 2005 The genetic theory of adaptation: a brief history. Nat. Rev. Genet. 6, 119–127. (doi:10.1038/nrg1523)
    • (2005) Nat. Rev. Genet , vol.6 , pp. 119-127
    • Orr, H.A.1
  • 37
    • 0031714655 scopus 로고    scopus 로고
    • The population genetics of adaptation: The distribution of factors fixed during adaptive evolution
    • Orr HA. 1998 The population genetics of adaptation: the distribution of factors fixed during adaptive evolution. Evolution 52, 935–949. (doi:10.2307/2411226)
    • (1998) Evolution , vol.52 , pp. 935-949
    • Orr, H.A.1
  • 39
    • 79960020226 scopus 로고    scopus 로고
    • The genetic architecture of adaptation under migration-selection balance
    • Yeaman S, Whitlock MC. 2011 The genetic architecture of adaptation under migration-selection balance. Evolution 65, 1897–1911. (doi:10.1111/j.1558-5646.2011.01269.x)
    • (2011) Evolution , vol.65 , pp. 1897-1911
    • Yeaman, S.1    Whitlock, M.C.2
  • 40
    • 67651108806 scopus 로고    scopus 로고
    • The genetics of quantitative traits: Challenges and prospects. Nat
    • Mackay TFC, Stone EA, Ayroles JF. 2009 The genetics of quantitative traits: challenges and prospects. Nat. Rev. Genet. 10, 565–577. (doi:10.1038/nrg2612)
    • (2009) Rev. Genet , vol.10 , pp. 565-577
    • Mackay, T.1    Stone, E.A.2    Ayroles, J.F.3
  • 41
    • 84876844893 scopus 로고    scopus 로고
    • From Beavis to beak color: A simulation study to examine how much QTL mapping can reveal about the genetic architecture of quantitative traits
    • Slate J. 2013 From Beavis to beak color: a simulation study to examine how much QTL mapping can reveal about the genetic architecture of quantitative traits. Evolution 67, 1251–1262. (doi:10.1111/evo.12060)
    • (2013) Evolution , vol.67 , pp. 1251-1262
    • Slate, J.1
  • 42
    • 84890819257 scopus 로고    scopus 로고
    • The evolution of genetic architectures underlying quantitative traits
    • Rajon E, Plotkin JB. 2013 The evolution of genetic architectures underlying quantitative traits. Proc. R. Soc. B 280, 20131552. (doi:10.1098/rspb.2013.1552)
    • (2013) Proc. R. Soc. B , vol.280 , pp. 20131552
    • Rajon, E.1    Plotkin, J.B.2
  • 43
    • 0347361672 scopus 로고    scopus 로고
    • Theoretical basis of the Beavis effect
    • Xu S. 2003 Theoretical basis of the Beavis effect. Genetics 165, 2259–2268.
    • (2003) Genetics , vol.165 , pp. 2259-2268
    • Xu, S.1
  • 44
    • 84880814649 scopus 로고    scopus 로고
    • Genomic dissection of variation in clutch size and egg mass in a wild great tit (Parus major) population
    • Santure AW, De Cauwer I, Robinson MR, Poissant J, Sheldon BC, Slate J. 2013 Genomic dissection of variation in clutch size and egg mass in a wild great tit (Parus major) population. Mol. Ecol. 22, 3949–3962. (doi:10.1111/mec.12376)
    • (2013) Mol. Ecol , vol.22 , pp. 3949-3962
    • Santure, A.W.1    De Cauwer, I.2    Robinson, M.R.3    Poissant, J.4    Sheldon, B.C.5    Slate, J.6
  • 45
    • 27144483445 scopus 로고    scopus 로고
    • Rab11-FIP3 and FIP4 interact with Arf6 and the exocyst to control membrane traffic in cytokinesis
    • Fielding AB et al. 2005 Rab11-FIP3 and FIP4 interact with Arf6 and the exocyst to control membrane traffic in cytokinesis. EMBO J. 24, 3389–3399. (doi:10.1038/sj.emboj.7600803)
    • (2005) EMBO J , vol.24 , pp. 3389-3399
    • Fielding, A.B.1
  • 46
    • 0036678476 scopus 로고    scopus 로고
    • Role of the Rab GTP-binding protein Ypt3 in the fission yeast exocytic pathway and its connection to calcineurin function
    • Cheng H et al. 2002 Role of the Rab GTP-binding protein Ypt3 in the fission yeast exocytic pathway and its connection to calcineurin function. Mol. Biol. Cell 13, 2963–2976. (doi:10.1091/mbc.01-09-0463)
    • (2002) Mol. Biol. Cell , vol.13 , pp. 2963-2976
    • Cheng, H.1
  • 47
  • 48
    • 19944433788 scopus 로고    scopus 로고
    • The FIP3-Rab11 protein complex regulates recycling endosome targeting to the cleavage furrow during late cytokinesis
    • Wilson GM et al. 2005 The FIP3-Rab11 protein complex regulates recycling endosome targeting to the cleavage furrow during late cytokinesis. Mol. Biol. Cell 16, 849–860. (doi:10.1091/mbc.E04-10-0927)
    • (2005) Mol. Biol. Cell , vol.16 , pp. 849-860
    • Wilson, G.M.1
  • 49
    • 0141534246 scopus 로고    scopus 로고
    • Identification of urotensin II-related peptide as the urotensin II-immunoreactive molecule in the rat brain
    • Sugo T et al. 2003 Identification of urotensin II-related peptide as the urotensin II-immunoreactive molecule in the rat brain. Biochem. Biophys. Res. Commun. 310, 860–868. (doi:10.1016/j.bbrc.2003.09.102)
    • (2003) Biochem. Biophys. Res. Commun , vol.310 , pp. 860-868
    • Sugo, T.1
  • 51
    • 53749102606 scopus 로고    scopus 로고
    • Natural selection on a major armor gene in threespine stickleback
    • Barrett RD, Rogers SM, Schluter D. 2008 Natural selection on a major armor gene in threespine stickleback. Science 322, 255–257. (doi:10.1126/science.1159978)
    • (2008) Science , vol.322 , pp. 255-257
    • Barrett, R.D.1    Rogers, S.M.2    Schluter, D.3
  • 52
    • 1642300825 scopus 로고    scopus 로고
    • Conserved genetic basis of a quantitative plumage trait involved in mate choice
    • Mundy NI, Badcock NS, Hart T, Scribner K, Janssen K, Nadeau NJ. 2004 Conserved genetic basis of a quantitative plumage trait involved in mate choice. Science 303, 1870–1873. (doi:10.1126/science.1093834)
    • (2004) Science , vol.303 , pp. 1870-1873
    • Mundy, N.I.1    Badcock, N.S.2    Hart, T.3    Scribner, K.4    Janssen, K.5    Nadeau, N.J.6
  • 53
    • 69549110251 scopus 로고    scopus 로고
    • On the origin and spread of an adaptive allele in deer mice
    • Linnen CR, Kingsley EP, Jensen JD, Hoekstra HE. 2009 On the origin and spread of an adaptive allele in deer mice. Science 325, 1095–1098. (doi:10.1126/science.1175826)
    • (2009) Science , vol.325 , pp. 1095-1098
    • Linnen, C.R.1    Kingsley, E.P.2    Jensen, J.D.3    Hoekstra, H.E.4
  • 57
    • 79958799393 scopus 로고    scopus 로고
    • Genome-wide association mapping identifies the genetic basis of discrete and quantitative variation in sexual weaponry in a wild sheep population
    • Johnston SE, McEwan JC, Pickering NK, Kijas JW, Beraldi D, Pilkington JG, Pemberton JM, Slate J. 2011 Genome-wide association mapping identifies the genetic basis of discrete and quantitative variation in sexual weaponry in a wild sheep population. Mol. Ecol. 20, 2555–2566. (doi:10.1111/j.1365-294X.2011.05076.x)
    • (2011) Mol. Ecol , vol.20 , pp. 2555-2566
    • Johnston, S.E.1    McEwan, J.C.2    Pickering, N.K.3    Kijas, J.W.4    Beraldi, D.5    Pilkington, J.G.6    Pemberton, J.M.7    Slate, J.8
  • 58
    • 34249826353 scopus 로고    scopus 로고
    • Mapping quantitative trait loci underlying fitness-related traits in a free-living sheep population
    • Beraldi D, McRae AF, Gratten J, Slate J, Visscher PM, Pemberton JM. 2007 Mapping quantitative trait loci underlying fitness-related traits in a free-living sheep population. Evolution 61, 1403–1416. (doi:10.1111/j.1558-5646.2007.00106.x)
    • (2007) Evolution , vol.61 , pp. 1403-1416
    • Beraldi, D.1    McRae, A.F.2    Gratten, J.3    Slate, J.4    Visscher, P.M.5    Pemberton, J.M.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.