Dismantling Melaspileaceae: a first phylogenetic study of Buelliella, Hemigrapha, Karschia, Labrocarpon and Melaspilea

Fungal Diversity

Volumn 71, Issue 1, 2015, Pages 141-164

  Ertz, Damien ^a   Diederich, Paul ^b  

^a Department Bryophytes Thallophytes ^*  (Belgium)

^b MUSÉE NATIONAL D HISTOIRE NATURELLE   (Luxembourg)

Author keywords

Asterinales; Eremithallales; Lichenicolous fungi; Phylogeny; Taxonomy

Indexed keywords

ASCOMYCOTA; DOTHIDEOMYCETES; FUNGI; MELASPILEA; MELASPILEACEAE; PEZIZOMYCOTINA;

EID: 84926379472     PISSN: 15602745     EISSN: 18789129     Source Type: Journal    
DOI: 10.1007/s13225-015-0321-1     Document Type: Article

References (86)

1. Akaike H (1973) Information theory as an extension of the maximum likelihood principle. In: Petrov BN, Caski F (eds) Second international symposium on information theory. Akademiai Kiado, Budapest
2. Aptroot A, Diederich P, Sérusiaux E, Sipman HJM (1997) Lichens and lichenicolous fungi from New Guinea. Bibl Lichenol 64:1–220
3. Ariyawansa HA, Thambugala KM, Kang J-C, Alias SA, Chukeatirote E, Hyde KD (2014) Towards a natural classification of Dothideomycetes 2: The genera Cucurbidothis, Heterosphaeriopsis, Hyalosphaera, Navicella and Pleiostomellina (Dothideomycetes incertae sedis). Phytotaxa 176:7–17
4. Barkhalov SO, Novruzov VS (1977) Lichenes ex Azerbaidzhania pro URSS novi. Novitates Systematicae Plantarum non Vascularium 14:141–143
5. Boehm EWA, Mugambi GK, Miller AN, Huhndorf SM, Marincowitz S, Spatafora JW, Schoch CL (2009a) A molecular phylogenetic reappraisal of the Hysteriaceae, Mytilinidiaceae and Gloniaceae (Pleosporomycetidae, Dothideomycetes) with keys to world species. Stud Mycol 64:49–83
6. Boehm EWA, Schoch CL, Spatafora JW (2009b) On the evolution of the Hysteriaceae and Mytilinidiaceae (Pleosporomycetidae, Dothideomycetes, Ascomycota) using four nuclear genes. Mycol Res 113:461–479
7. Bricaud O, Roux C (1991) L’Encephalographetum elisae Bricaud et Roux ass. nov., une association lichénique saxicole-calcicole, sciaphile. Bull Soc Linn Provence 42:79–90
8. Cáceres M, Lücking R (2000) Three new species and one new combination of foliicolous lichens and lichenicolous fungi from the atlantic rainforest in Pernambuco state, Brazil. Nova Hedwigia 70:217–226
9. Clauzade G, Roux C (1985) Likenoj de okcidenta europo ilustrita determinlibro. Bull Soc Bot Centre – Ouest, N.S., (Numéro special) 7: 1–893
10. Coppins BJ (1989) Notes on the Arthoniaceae in the British Isles. Lichenologist 21:195–216
11. Coppins BJ, James PW, Hawksworth DL (1992) New species and combinations in the lichen flora of Great Britain and Ireland. Lichenologist 24:351–369
12. Coppins B, Kondratyuk S, Khodosovtsev A, Wolseley P, Zelenko S (2001) New for Crimea and Ukraine species of the lichens. Ukrayins’kyi Botanichnyi Zhurnal 58(6):716–722
13. Diederich P (2003) New species and new records of American lichenicolous fungi. Herzogia 16:41–90
14. Diederich P, Wedin M (2000) The species of Hemigrapha (lichenicolous Ascomycetes, Dothideales) on Peltigerales. Nord J Bot 20:203–214
15. Doyle JJ, Doyle JL (1990) Isolation of plant DNA from fresh tissue. Focus 12:13–15
16. Eichler M, Cezanne R, Diederich P, Ertz D, Van den Broeck D, van den Boom P, Sérusiaux E (2010) New or interesting lichens and lichenicolous fungi from Belgium, Luxembourg and northern France. XIII. Bull Soc Nat Luxemb 111:33–46
17. Eriksson O (1981) The families of bitunicate ascomycetes. Opera Botanica 60:1–220
18. Eriksson OE, Baral HO, Currah RS, Hansen K, Kurtzman CP, Laessøe T, Rambold G (eds) (2001) Notes on ascomycete systematics. Nos 3128–3302. Myconet 6: 1–26
19. Ertz D, Lawrey JD, Common RS, Diederich P (2014a) Molecular data resolve a new order of Arthoniomycetes sister to the primarily lichenized Arthoniales and composed of black yeasts, lichenicolous and rock-inhabiting species. Fungal Divers 66:113–137. doi:10.1007/s13225-013-0250-9
20. Ertz D, Tehler A, Irestedt M, Frisch A, Thor G, van den Boom P (2014b) A large-scale phylogenetic revision of Roccellaceae (Arthoniales) reveals eight new genera. Fungal Divers. doi:10.1007/s13225-014-0286-5
21. Etayo J (1998) Aportación a la flora liquénica de las Islas Canarias. iv. Líquenes epifitos de La Gomera (Islas Canarias). Trop Bryol 14:85–107
22. Fée ALA (1825) [‘1824’] Essai sur les cryptogames des écorces exotiques officinales [etc.]. Firmin Didot, Paris
23. Fink B (1935) The Lichen Flora of the United States. Completed for Publication by Joyce Hedrick. University of Michigan Press, Ann Arbor. xii + 426 pp
24. Fries EM (1825) Systema orbis vegetabilis. Lundae, e Typographia Academica, 374 pp
25. Fries EM (1831) Lichenographia europea reformata. Typis Berlingianis, Lund, 486 pp
26. Frisch A, Thor G, Ertz D, Grube M (2014) The Arthonialean challenge: restructuring Arthoniaceae. Taxon 63:727–744
27. Gasparyan A, Sipman HJM (2013) New lichen records from Armenia. Mycotaxon 123: link page 491 (http://www.ingentaconnect.com/content/mtax/mt/2013/00000123/00000001/art00062;jsessionid=13x6v0i5xej7q.alice)
28. Gelman A, Rubin DB (1992) Inference from iterative simulation using multiple sequences. Stat Sci 7:457–511
29. Hafellner J (1979) Karschia. Revision einer Sammelgattung an der Grenze von lichenisierten und nichlichenisierten Ascomyceten. Beiheft zur Nova Hedwigia 62:1–248
30. Hafellner J (1984) Studien in Richtung einer natürlichen Gliederung der Sammelfamilien Lecanoraceae und Lecideaceae. Beiheft zur Nova Hedwigia 79:241–371
31. Hafellner J, Triebel D, Ryan BD, Nash TH III (2002) On lichenicolous fungi from North America. II. Mycotaxon 84:293–329
32. Hawksworth DL (1975) Notes on British lichenicolous fungi, I. Kew Bull 30:183–203
33. Hawksworth DL (1982) Melaspilea canariensis sp. nov. and other lichenicolous fungi from Tenerife. Lichenologist 14:83–86
34. Hawksworth DL (1994) Discussion 10. Families and genera of uncertain position. In Hawksworth DL. Ascomycete Systematics: Problems and Perspectives in the Nineties – Outline of the Ascomycetes. NATO ASI Series A 269:1–453
35. Hofmann TA, Kirschner R, Piepenbring M (2010) Phylogenetic relationships and new records of Asterinaceae (Dothideomycetes) from Panama. Fungal Divers 43:39–53
36. Holm K, Holm L (1986) [1985] Kleinpilze auf Dryas-Stämmchen. Sydowia 38: 136–145
37. Hongsanan S, Li Y-M, Liu J-K, Hofmann T, Piepenbring M, Bhat JD, Boonmee S, Doilom M, Singtripop C, Tian Q, Mapook A, Zeng X-Y, Bahkali AH, Xu J-C, Mortimer PE, Wu X-H, Yang J-B, Hyde KD (2014) Revision of genera in Asterinales. Fungal Divers 68:1–68
38. Huelsenbeck JP, Ronquist F (2001) MRBAYES: Bayesian inference of phylogeny. Bioinformatics 17:754–755
39. Hyde KD, Gareth Jones EB, Liu J-K et al (2013) Families of Dothideomycetes. Fungal Divers 63:1–313
40. Inoue M (1982) The genera Lecidea, Lecidella and Huilia in Japan I. Lecidea. J Sci Hiroshima Univ Series B Div 2 (Botany) 18:1–55
41. Kalb K, Buaruang K, Mongkolsuk P, Boonpragob K (2012) New or otherwise interesting lichens. VI, including a lichenicolous fungus. Phytotaxa 42:35–47
42. Kantvilas G, Coppins BJ (1997a) Melaspilea circumserpens Nyl. rediscovered and referred to Glonium; with discussion on the provenance of some of Robert brown’s lichen specimens. Lichenologist 29:525–531
43. Kantvilas G, Coppins BJ (1997b) Notes on the Tasmanian records of Melaspilea gemella (Eschw.) Nyl. Australasian Lichenol 41:16–17
44. Karsten PA (1885) Revisio monographica atque synopsis, ascomycetum in Fennia hucusove detectorum. Acta Soc Pro Fauna et Flora Fennica 2(6):1–174
45. Khodosovtsev AY, Naumovich GO, Elix JA, Kondratyuk SY (2009) Lecanora panticapaensis sp. nova and Buelliella poetshii, two noteworthy species from Ukraine. Bibl Lichenol 100:189–197
46. Kirk PM, Cannon PF, Minter DW, Stalpers JA (2008) Ainsworth & Bisby’s dictionary of the fungi, 10th edn. CABI Publishing, UK
47. Kutorga E, Hawksworth DL (1997) A reassessment of the genera referred to the family Patellariaceae (Ascomycota). Syst Ascomycetum 15:1–110
48. Lücking R, Lumbsch HT, Stéfano JFD, Lizano D, Carranza J, Bernecker A, Chaves JL, Umaña L (2008) Eremithallus costaricensis (Ascomycota: Lichinomycetes: Eremithallales), a new fungal lineage with a novel lichen symbiotic lifestyle discovered in an urban relict forest in Costa Rica. Symbiosis 46:161–170
49. Lumbsch HT, Huhndorf SM (2007) Outline of Ascomycota – 2007. Myconet 13:1–58
50. Lumbsch HT, Ahti T, Altermann S et al (2011) One hundred new species of lichenized fungi: a signature of undiscovered global diversity. Phytotaxa 18:1–127
51. Maddison D, Maddison W (2002) MacClade Version 4.03PPC: Analysis of Phylogeny and Character Evolution. In. Sinauer Associates, Sunderland, MA
52. Matzer M (1996) Lichenicolous ascomycetes with fissitunicate asci on foliicolous lichens. Mycological Papers, 171. CAB International, Wallingford
53. Miadlikowska J, McCune B, Lutzoni F (2002) Pseudocyphellaria perpetua, a new lichen from Western North America. Bryologist 105:1–10
54. Miller MA, Pfeiffer W, Schwartz T (2010) Creating the CIPRES science gateway for inference of large phylogenetic trees. In: Proceedings of the Gateway Computing Environments Workshop (GCE), 14 November 2010, New Orleans, pp 1–8
55. Muggia L, Gueidan C, Knudsen K, Perlmutter G, Grube M (2013) The lichen connections of Black fungi. Mycopathologia 175:523–535
56. Müller J (1887) Graphideae Feeanae inclus. trib. affinibus nec non Graphideae exoticae Acharii, El. Friesii et Zenkeri e novo studio speciminum originalum expositae et in novam dispositionem ordinatae. Mémoires de la Société de Physique et d’Histoire Naturelle de Genève 29:1–80
57. Müller E, von Arx JA (1962) Die Gattungen der didymosporen Pyrenomyceten. Beiträge zur Kryptogamenflora der Schweiz 11:1–922
58. Nograsek A, Matzer M (1991) Nicht-pyrenokarpe Ascomyceten au Gefässplanzen der Polsterseggenrasen I. Arten auf Dryas octopetala. Nova Hedwigia 53:445–475
59. Nylander W (1863) Lichenes. In: Triana J, Planchon JE. Prodromus Florae Novo-Granatensis ou Énumération des plantes de la Nouvelle-Grénade avec description des espèces nouvelles. Ann Sci Nat 20: 228–279
60. Pérez-Ortega S, Etayo J (2010) Labrocarpon gen. nov. for Melaspilea canariensis, with the description of Buelliella protoparmeliopsis sp. nov. from South America. Lichenologist 42:271–276
61. Poelt J (1973) Classification. In: Ahmadjian V, Hale ME (eds) The lichens. Academic, New York and London, pp 599–632
62. Posada D, Crandall KA (1998) MODELTEST: testing the model of DNA substitution. Bioinformatics 14:817–818
63. Rambaut A, Drummond AJ (2007) Tracer v1.4, Available from http://beast.bio.ed.ac.uk/
64. Rambaut A (2012) FigTree v1.3.1, available from: http://tree.bio.ed.ac.uk/software/figtree/
65. Redinger K (1938) Familie Graphidaceae. In: Rabenhorst’s Kryptogamen – Flora von Deutschland, Österreich und der Schweiz. 9 (2/1/2). Leipzig, Akad. Verlagsges. M.B.H., pp 181–404
66. Reinke J (1895) Abhandlungen über Flechten III. Einige Voraussetzungen einer phylogenetischen Morphologie der Flechten. Jahrbuch für wissenschaftliche Botanik 28:39–150
67. Renobales G, Aguirre B (1990) The nomenclature and systematic position of the genus Encephalographa. Syst Ascomycetum 8:87–92
68. Ronquist F, Huelsenbeck JP (2003) MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinforma 19:1572–1574
69. Roux et coll. (2014) Catalogue des lichens et champignons lichénicoles de France métropolitaine. Des Abbayes, Fougères (Ille-et-Vilaine), pp 1525
70. Ruibal C, Gueidan C, Selbmann L, Gorbushina AA, Crous PW, Groenewald JZ, Muggia L, Grube M, Isola D, Schoch CL, Staley JT, Lutzoni F, de Hoog GS (2009) Phylogeny of rock-inhabiting fungi related to Dothideomycetes. Stud Mycol 64:123–133
71. Ryan BD, Nimis PL (2004) Melaspilea. In: Nash TH III, Ryan BD, Diederich P, Gries C, Bungartz F (eds) Lichen Flora of the Greater Sonoran Desert Region, vol 2, Lichens Unlimited. Arizona State University, Tempe, pp 358–359
72. Sanderson NA, Hawksworth DL, Aptroot A (2009) Melaspilea Nyl. (1857). In: Smith CW, Aptroot A, Coppins BJ, Fletcher A, Gilbert OL, James PW, Wolseley PA (eds) The lichens of Great Britain and Ireland. The British Lichen Society, the Natural History Museum, London, pp 576–579
73. Santesson R, Moberg R, Nordin A, Tonsberg T, Vitikainen O (2004) Lichen-forming and lichenicolous fungi of Fennoscandia. Museum of Evolution, Uppsala University, Uppsala, Sweden. pp 359
74. Swofford DL (2002) PAUP*: phylogenetic analysis using parsimony (*and other methods). Version 4. Sinauer Associates, Sunderland, MA
75. Tretiach M, Modenesi P (1999) Critical notes on the lichen genus Encephalographa A. Massal. (?Hysteriaceae). Nova Hedwigia 68:527–544
76. Vainio EA (1921) Lichenes Insularum Philippinarum III. Acta Soc Sci Fennicae, Ser A 15:1–368
77. Vilgalys R, Hester M (1990) Rapid genetic identification and mapping of enzymatically amplified ribosomal DNA from several Cryptococcus species. J Bacteriol 172:4238–4246
78. von Arx JA, Müller E (1975) A re-evaluation of the bitunicate ascomycetes with keys to families and genera. Stud Mycol 9:1–159
79. Watson W (1929) The classification of lichens. New Phytol 28:85–116
80. Wei J-C (1991) An enumeration of lichens in China. International Academic Publishers, Beijing, p 278
81. Wirth V, Hauck M, Schultz M (2013) Die Flechten Deutschlands. Ulmer 2:1244
82. Yoshimura I, Yamamoto Y, Nakano T, Finnie J (2002) Isolation and culture of lichen photobionts and mycobionts. In: Kranner I, Beckett RP, Varma A (eds) Protocols in Lichenology - Culturing, Biochemistry, Physiology and Use in Biomonitoring. Springer, Berlin, pp 3–33
83. Zeller L, Tóth S (1960) Banhegyia, eine neue Gattung der Lecanorales. Sydowia 14:326–329
84. Zoller S, Scheidegger C, Sperisen C (1999) PCR primers for the amplification of mitochondrial small subunit ribosomal DNA of lichen-forming ascomycetes. Lichenologist 31:511–516
85. Zhurbenko MP, Zhdanov IS (2013) Melaspilea galligena sp. nov. and some other lichenicolous fungi from Russia. Folia Cryptog Estonica 50:89–99
86. Zwickl DJ (2006) Genetic algorithm approaches for the phylogenetic analysis of large biological sequence datasets under the maximum likelihood criterion. Ph. D. dissertation, The University of Texas at Austin