A large-scale phylogenetic revision of Roccellaceae (Arthoniales) reveals eight new genera

Fungal Diversity

Volumn 70, Issue 1, 2015, Pages 31-53

  Ertz, Damien ^a   Tehler, Anders ^b   Irestedt, Martin ^b   Frisch, Andreas ^c   Thor, Göran ^d   van den Boom, Pieter ^e  

^a BOTANIC GARDEN MEISE   (Belgium)

^b SWEDISH MUSEUM OF NATURAL HISTORY   (Sweden)

^c DEPARTMENT OF BOTANY   (Japan)

^d SWEDISH UNIVERSITY OF AGRICULTURAL SCIENCES   (Sweden)

^e Swedish University of Agricultural Sciences ^*  (Netherlands)

Author keywords

Arthoniomycetes; Lichenized fungi; Molecular phylogenetics; New genera; Taxonomy

Indexed keywords

ARTHONIALES; ARTHONIOMYCETES; FUNGI; LECANACTIS; OPEGRAPHA; ROCCELLACEAE; ROCCELLINA; SCHISMATOMMA; SIGRIDEA; SYNCESIA;

EID: 84906839373     PISSN: 15602745     EISSN: 18789129     Source Type: Journal    
DOI: 10.1007/s13225-014-0286-5     Document Type: Article

References (56)

1. Akaike H (1973) Information theory as an extension of the maximum likelihood principle. In: Petrov BNFC (ed) Second international symposium on information theory. Akademiai Kiado, Budapest
2. Aptroot A (2008) Lichens of St Helena and Ascension Island. Bot J Linn Soc 158:147–171
3. Aptroot A, Sparrius LB (2008) Crustose Roccellaceae in the Galapagos Islands, with the new species Schismatomma spierii. Bryologist 111:659–666
4. Aptroot A, Ertz D, de Lima EL, de Jesus KA, Maia LC, Cáceres MES (2013) Two new species of Roccellaceae (Ascomycota: Arthoniales) from Brazil, with the description of the new genus Sergipea. Lichenologist 45:627–634
5. Doyle JJ, Doyle JL (1990) Isolation of plant DNA from fresh tissue. Focus 12:13–15
6. Egea JM, Torrente P (1993) Cresponea a new genus of lichenized fungi in the order Arthoniales (Ascomycotina). Mycotaxon 48:301–331
7. Egea JM, Torrente P (1994) El género de hongos liquenizados Lecanactis (Ascomycotina). Bibl Lichenol 54:1–205
8. Egea JM, Tehler A, Torrente P, Sipman H (1995) Tania, a new genus with byssoid thallus in the order Arthoniales and new data on Sagenidiopsis. Lichenologist 27:351–359
9. Ertz D (2009) A new species of Enterographa, E. diederichiana (Roccellaceae), from Zambia. Bryologist 112:390–393
10. Ertz D, Tehler A (2011) The phylogeny of Arthoniales (Pezizomycotina) inferred from nucLSU and RPB2 sequences. Fungal Divers 49:47–71
11. Ertz D, Miadlikowska J, Lutzoni F, Dessein S, Raspe O, Vigneron N, Hofstetter V, Diederich P (2009) Towards a new classification of the Arthoniales (Ascomycota) based on a three-gene phylogeny focussing on the genus Opegrapha. Mycol Res 113:141–152
12. Ertz D, Lawrey JD, Common RS, Diederich P (2013) Molecular data resolve a new order of Arthoniomycetes sister to the primarily lichenized Arthoniales and composed of black yeasts, lichenicolous and rock-inhabiting species. Fungal Divers. doi:10.1007/s13225-013-0250-9
13. Ertz D, Tehler A, Fischer E, Killmann D, Razafindrahaja T, Serusiaux E (2014) Isalonactis a new genus of Roccellaceae (Arthoniales) from southern Madagascar. Lichenologist 46:159–167
14. Farris JS, Albert VA, Källersjö M, Lipscomb DL, Kluge AG (1996) Parsimony jackknifing outperforms neighbor-joining. Cladistics 12:99–124
15. Follmann G (2001) An integrated key to, and a critical survey of, the South American representatives of the lichen family Roccellaceae (Arthoniales). J Hattori Bot Lab 90:251–267
16. Follmann G, Werner BC (2003) Lichenicolous fungi occurring on Roccellaceae (Arthoniales). I. New species from South America. J Hattori Bot Lab 94:261–292
17. Galloway DJ (1985) Flora of New Zealand lichens. Government Printer, Wellington
18. Gelman A, Rubin DB (1992) Inference from iterative simulation using multiple sequences. Stat Sci 7:457–511
19. Goloboff PA, Farris JS, Nixon KC (2008) TNT, a free program for phylogenetic analysis. Cladistics 24:774–786
20. Grube M (1998) Classification and phylogeny in the Arthoniales (lichenized Ascomycetes). Bryologist 101:377–391
21. Harris RC (1990) Some Florida lichens. Published by the author. The New York Botanical Garden, Bronx
22. Hawksworth D, Kirk P, Sutton BP, Pegler DN (1995) Ainsworth & Bisby’s the dictionary of the Fungi, 8th edn. CAB International, Wallingford
23. Henssen A, Renner B, Vobis G (1979) Sagenidium patagonicum a new South American lichen. Lichenologist 11:263–270
24. Kantvilas G (2004) A contribution to the Roccellaceae in Tasmania: new species and notes on Lecanactis and allied genera. Symb Bot Upsal 34(1):183–203
25. Lawrey JD, Binder M, Diederich P, Molina MC, Sikaroodi M, Ertz D (2007) Phylogenetic diversity of lichen-associated homobasidiomycetes. Mol Phylogenet Evol 44:778–789
26. Liu Y, Whelen S, Hall B (1999) Phylogenetic relationships among Ascomycetes: evidence from an RNA polymerase II subunit. Mol Biol Evol 16:1799–1808
27. Lücking R (2008) Foliicolous lichenized fungi. Flora Neotropical Monogr 103:1–866
28. Maddison D, Maddison W (2002) MacClade Version 4.03PPC: analysis of phylogeny and character evolution. Sinauer Associates, Sunderland
29. Mason-Gamer RJ, Kellogg EA (1996) Testing for phylogenetic conflict among molecular datasets in the tribe Triticeae (Gramineae). Syst Biol 45:524–545
30. Miadlikowska J, McCune B, Lutzoni F (2002) Pseudocyphellaria perpetua, a new lichen from Western North America. Bryologist 105:1–10
31. Miller MA, Pfeiffer W, Schwartz T (2010) Creating the CIPRES science gateway for inference of large phylogenetic trees. In: Proceedings of the gateway computing environments workshop (GCE), 14 November 2010, New Orleans, pp 1–8
32. Nylander JAA (2005) MrModeltest v.2.2. Computer program distributed by the author, Uppsala
33. Orange A, James PW, White FJ (2001) Microchemical methods for the identification of lichens. British Lichen Society, London
34. Pentecost A, James PW (2009) Opegrapha. In: Smith CW, Aptroot A, Coppins BJ, Flechter A, Gilbert OL, James PW, Wolseley PA (eds) The lichens of Great Britain and Ireland. The Natural History Museum, London, pp 631–647
35. Rambaut A, Drummond AJ (2007) Tracer v1.4, Available from http://beast.bio.ed.ac.uk/
36. Reeb V, Lutzoni F, Roux C (2004) Contribution of RPB2 to multilocus phylogenetic studies of the euascomycetes (Pezizomycotina, Fungi) with special emphasis on the lichen-forming Acarosporaceae and evolution of polyspory. Mol Phylogenet Evol 32:1036–1060
37. Ronquist F, Huelsenbeck JP (2003) MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19:1572–1574
38. Santesson R (1949) Dolichocarpus and Xanthopeltis, two new lichen genera from Chile. Svensk Bot Tidskr 43:547–567
39. Sipman H (2009) The lichen genus Syncesia (Arthoniales) on Saba and St. Eustatius (West Indies). Opusc Philolichenum 7:55–60
40. Sparrius LB (2004) A monograph of Enterographa and Sclerophyton. Bibl Lichenol 89:1–141
41. Swofford DL (1998) PAUP*. Phylogenetic analysis using parsimony (* and other methods). Version 4. Sinauer Associates, Sunderland
42. Tehler A (1983) The genera Dirina and Roccellina (Roccellaceae). Opera Bot 70:1–86
43. Tehler A (1990) A new approach to the phylogeny of Euascomycetes with a cladistic outline of Arthoniales focussing on Roccellaceae. Can J Bot 68:2458–2492
44. Tehler A (1993a) Schismatomma and three new or reinstated genera, a reassessment of generic relationships in Arthoniales. Cryptogamic Bot 3:139–151
45. Tehler A (1993b) The genus Schismatomma (Arthoniales, Euascomycetidae). Opera Bot 118:1–38
46. Tehler A (1993c) The genus Sigridea (Roccellaceae, Arthoniales, Euascomycetidae). Nova Hedwigia 57:417–435
47. Tehler A (1997) Syncesia (Arthoniales, Euascomycetidae). Flora Neotropica, 74, New York Botanical Garden (for Organization for Flora Neotropica), New York
48. Tehler A, Irestedt M (2007) Parallel evolution of lichen growth forms in the family Roccellaceae (Arthoniales, Ascomycota). Cladistics 23:432–454
49. Tehler A, Dahlkild Å, Eldenäs P, Feige GB (2004) The phylogeny and taxonomy of Macaronesian, European and Mediterranean Roccella (Roccellaceae, Arthoniales). Symb Bot Upsal 34(1):405–428
50. Tehler A, Irestedt M, Bungartz F, Wedin M (2009a) Evolution and reproduction modes in the Roccella galapagoensis aggregate (Roccellaceae, Arthoniales). Taxon 58:438–456
51. Tehler A, Irestedt M, Wedin M, Ertz D (2009b) Origin, evolution and taxonomy of American Roccella (Roccellaceae, Ascomycetes). Syst Biodivers 7:307–317
52. Tehler A, Irestedt M, Wedin M, Ertz D (2010) The Old World Roccella species outside Europe and Macaronesia: taxonomy, evolution and phylogeny. Syst Biodivers 8:223–246
53. Tehler A, Ertz D, Irestedt M (2013a) The genus Dirina (Roccellaceae, Arthoniales) revisited. Lichenologist 45:427–476
54. Tehler A, Irestedt M, Ertz D (2013b) Austroroccella, a new fruticose genus in the family Roccellaceae. Bryologist 116:162–168
55. Thor G (1990) The lichen genus Chiodecton and five allied genera. Opera Bot 103:1–92
56. Vilgalys R, Hester M (1990) Rapid genetic identification and mapping of enzymatically amplified ribosomal DNA from several Cryptococcus species. J Bacteriol 172:4238–4246