-
1
-
-
79954414897
-
Wdr5 mediates self-renewal and reprogramming via the embryonic stem cell core transcriptional network
-
Ang Y-S, Tsai S-Y, Lee D-F, Monk J, Su J, Ratnakumar K, Ding J, Ge Y, Darr H, Chang B, et al. 2011. Wdr5 mediates self-renewal and reprogramming via the embryonic stem cell core transcriptional network. Cell 145: 183-197.
-
(2011)
Cell
, vol.145
, pp. 183-197
-
-
Ang, Y.-S.1
Tsai, S.-Y.2
Lee, D.-F.3
Monk, J.4
Su, J.5
Ratnakumar, K.6
Ding, J.7
Ge, Y.8
Darr, H.9
Chang, B.10
-
2
-
-
33646070846
-
A bivalent chromatin structure marks key developmental genes in embryonic stem cells
-
Bernstein BE, Mikkelsen TS, Xie X, Kamal M, Huebert DJ, Cuff J, Fry B, Meissner A, Wernig M, Plath K, et al. 2006. A bivalent chromatin structure marks key developmental genes in embryonic stem cells. Cell 125: 315-326.
-
(2006)
Cell
, vol.125
, pp. 315-326
-
-
Bernstein, B.E.1
Mikkelsen, T.S.2
Xie, X.3
Kamal, M.4
Huebert, D.J.5
Cuff, J.6
Fry, B.7
Meissner, A.8
Wernig, M.9
Plath, K.10
-
3
-
-
84865790047
-
An integrated encyclopedia of DNA elements in the human genome
-
Bernstein BE, Birney E, Dunham I, Green ED, Gunter C, Snyder M. 2012. An integrated encyclopedia of DNA elements in the human genome. Nature 489: 57-74.
-
(2012)
Nature
, vol.489
, pp. 57-74
-
-
Bernstein, B.E.1
Birney, E.2
Dunham, I.3
Green, E.D.4
Gunter, C.5
Snyder, M.6
-
4
-
-
60749125436
-
Epidermal homeostasis: A balancing act of stem cells in the skin
-
Blanpain C, Fuchs E. 2009. Epidermal homeostasis: a balancing act of stem cells in the skin. Nat Rev Mol Cell Biol 10: 207-217.
-
(2009)
Nat Rev Mol Cell Biol
, vol.10
, pp. 207-217
-
-
Blanpain, C.1
Fuchs, E.2
-
5
-
-
0035927727
-
Nodal signalling in the epiblast patterns the early mouse embryo
-
Brennan J, Lu CC, Norris DP, Rodriguez TA, Beddington RS, Robertson EJ. 2001. Nodal signalling in the epiblast patterns the early mouse embryo. Nature 411: 965-969.
-
(2001)
Nature
, vol.411
, pp. 965-969
-
-
Brennan, J.1
Lu, C.C.2
Norris, D.P.3
Rodriguez, T.A.4
Beddington, R.S.5
Robertson, E.J.6
-
6
-
-
34447527158
-
Derivationof pluripotent epiblast stem cells frommammalian embryos
-
BronsIGM, SmithersLE, TrotterMWB, Rugg-GunnP, SunB, Chuva deSousaLopesSM, HowlettSK, ClarksonA, Ahrlund-RichterL, PedersenRA, et al.2007.Derivationof pluripotent epiblast stem cells frommammalian embryos. Nature 448: 191-195.
-
(2007)
Nature
, vol.448
, pp. 191-195
-
-
Brons, I.G.M.1
Smithers, L.E.2
Trotter, M.W.B.3
Rugg-Gunn, P.4
Sun, B.5
Chuva de Sousa Lopes, S.M.6
Howlett, S.K.7
Clarkson, A.8
Ahrlund-Richter, L.9
Pedersen, R.A.10
-
7
-
-
79960888524
-
Activin/Nodal signaling controls divergent transcriptional networks in human embryonic stem cells and in endoderm progenitors
-
Brown S, Teo A, Pauklin S, Hannan N, Cho CH-H, Lim B, Vardy L, Dunn NR, Trotter M, Pedersen R, et al. 2011. Activin/Nodal signaling controls divergent transcriptional networks in human embryonic stem cells and in endoderm progenitors. Stem Cells 29: 1176-1185.
-
(2011)
Stem Cells
, vol.29
, pp. 1176-1185
-
-
Brown, S.1
Teo, A.2
Pauklin, S.3
Hannan, N.4
Cho, C.H.-H.5
Lim, B.6
Vardy, L.7
Dunn, N.R.8
Trotter, M.9
Pedersen, R.10
-
8
-
-
84866312611
-
Context-dependent action of transforming growth factor β family members on normal and cancer stem cells
-
Caja L, Kahata K, Moustakas A. 2012. Context-dependent action of transforming growth factor β family members on normal and cancer stem cells. Curr Pharm Des 18: 4072-4086.
-
(2012)
Curr Pharm Des
, vol.18
, pp. 4072-4086
-
-
Caja, L.1
Kahata, K.2
Moustakas, A.3
-
9
-
-
84876836223
-
Modification of enhancer chromatin: What, how, and why?
-
Calo E, Wysocka J. 2013. Modification of enhancer chromatin: what, how, and why? Mol Cell 49: 825-837.
-
(2013)
Mol Cell
, vol.49
, pp. 825-837
-
-
Calo, E.1
Wysocka, J.2
-
10
-
-
33745256758
-
Absence of Nodal signaling promotes precocious neural differentiation in the mouse embryo
-
Camus A, Perea-Gomez A, Moreau A, Collignon J. 2006. Absence of Nodal signaling promotes precocious neural differentiation in the mouse embryo. Dev Biol 295: 743-755.
-
(2006)
Dev Biol
, vol.295
, pp. 743-755
-
-
Camus, A.1
Perea-Gomez, A.2
Moreau, A.3
Collignon, J.4
-
11
-
-
84880548336
-
The intestinal crypt, a prototype stem cell compartment
-
Clevers H. 2013. The intestinal crypt, a prototype stem cell compartment. Cell 154: 274-284.
-
(2013)
Cell
, vol.154
, pp. 274-284
-
-
Clevers, H.1
-
12
-
-
43249102851
-
Erasing the methyl mark: Histone demethylases at the center of cellular differentiation and disease
-
Cloos PAC, Christensen J, Agger K, Helin K. 2008. Erasing the methyl mark: histone demethylases at the center of cellular differentiation and disease. Genes Dev 3: 1115-1140.
-
(2008)
Genes Dev
, vol.3
, pp. 1115-1140
-
-
Cloos, P.A.C.1
Christensen, J.2
Agger, K.3
Helin, K.4
-
13
-
-
84892683106
-
Mll2 is required for H3K4 trimethylation on bivalent promoters in embryonic stem cells, whereas Mll1 is redundant
-
Denissov S, Hofemeister H, Marks H, Kranz A, Ciotta G, Singh S, Anastassiadis K, Stunnenberg HG, Stewart AF. 2014. Mll2 is required for H3K4 trimethylation on bivalent promoters in embryonic stem cells, whereas Mll1 is redundant. Development 141: 526-537.
-
(2014)
Development
, vol.141
, pp. 526-537
-
-
Denissov, S.1
Hofemeister, H.2
Marks, H.3
Kranz, A.4
Ciotta, G.5
Singh, S.6
Anastassiadis, K.7
Stunnenberg, H.G.8
Stewart, A.F.9
-
14
-
-
84864316059
-
WRAD: Enabler of the SET1-family of H3K4 methyltransferases
-
Ernst P, Vakoc CR. 2012. WRAD: enabler of the SET1-family of H3K4 methyltransferases. Brief Funct Genomics 11: 217-226.
-
(2012)
Brief Funct Genomics
, vol.11
, pp. 217-226
-
-
Ernst, P.1
Vakoc, C.R.2
-
15
-
-
84883743029
-
The Mll2 branch of the COMPASS family regulates bivalent promoters in mouse embryonic stem cells
-
Hu D, Garruss AS, Gao X, Morgan MA, Cook M, Smith ER, Shilatifard A. 2013. The Mll2 branch of the COMPASS family regulates bivalent promoters in mouse embryonic stem cells. Nat Struct Mol Biol 20: 1093-1097.
-
(2013)
Nat Struct Mol Biol
, vol.20
, pp. 1093-1097
-
-
Hu, D.1
Garruss, A.S.2
Gao, X.3
Morgan, M.A.4
Cook, M.5
Smith, E.R.6
Shilatifard, A.7
-
16
-
-
79951711112
-
Role for Dpy-30 in ES cell-fate specification by regulation of H3K4methylationwithin bivalent domains
-
JiangH, ShuklaA, WangX, ChenW, BernsteinBE, RoederRG.2011. Role for Dpy-30 in ES cell-fate specification by regulation of H3K4methylationwithin bivalent domains. Cell 144: 513-525.
-
(2011)
Cell
, vol.144
, pp. 513-525
-
-
Jiang, H.1
Shukla, A.2
Wang, X.3
Chen, W.4
Bernstein, B.E.5
Roeder, R.G.6
-
17
-
-
80051537445
-
Chromatin and transcriptional signatures for Nodal signaling during endoderm formation in hESCs
-
Kim SW, Yoon S-J, Chuong E, Oyolu C, Wills AE, Gupta R, Baker J. 2011. Chromatin and transcriptional signatures for Nodal signaling during endoderm formation in hESCs. Dev Biol 357: 492-504.
-
(2011)
Dev Biol
, vol.357
, pp. 492-504
-
-
Kim, S.W.1
Yoon, S.-J.2
Chuong, E.3
Oyolu, C.4
Wills, A.E.5
Gupta, R.6
Baker, J.7
-
18
-
-
84866742560
-
TGFβ signalling in context
-
Massagué J. 2012. TGFβ signalling in context. Nat Rev Mol Cell Biol 13: 616-630.
-
(2012)
Nat Rev Mol Cell Biol
, vol.13
, pp. 616-630
-
-
Massagué, J.1
-
19
-
-
80155137594
-
Master transcription factors determine cell-type-specific responses to TGF-β signaling
-
Mullen AC, Orlando DA, Newman JJ, Lovén J, Kumar RM, Bilodeau S, Reddy J, Guenther MG, DeKoter RP, Young RA. 2011. Master transcription factors determine cell-type-specific responses to TGF-β signaling. Cell 147: 565-576.
-
(2011)
Cell
, vol.147
, pp. 565-576
-
-
Mullen, A.C.1
Orlando, D.A.2
Newman, J.J.3
Lovén, J.4
Kumar, R.M.5
Bilodeau, S.6
Reddy, J.7
Guenther, M.G.8
De Koter, R.P.9
Young, R.A.10
-
20
-
-
66049117813
-
Naive and primed pluripotent states
-
Nichols J, Smith A. 2009. Naive and primed pluripotent states. Cell Stem Cell 4: 487-492.
-
(2009)
Cell Stem Cell
, vol.4
, pp. 487-492
-
-
Nichols, J.1
Smith, A.2
-
21
-
-
34548434716
-
Whole-genome analysis of histone H3 lysine 4 and lysine 27 methylation in human embryonic stem cells
-
Pan G, Tian S, Nie J, Yang C, Ruotti V, Wei H, Jonsdottir GA, Stewart R, Thomson JA. 2007. Whole-genome analysis of histone H3 lysine 4 and lysine 27 methylation in human embryonic stem cells. Cell Stem Cell 1: 299-312.
-
(2007)
Cell Stem Cell
, vol.1
, pp. 299-312
-
-
Pan, G.1
Tian, S.2
Nie, J.3
Yang, C.4
Ruotti, V.5
Wei, H.6
Jonsdottir, G.A.7
Stewart, R.8
Thomson, J.A.9
-
22
-
-
84884844190
-
The cell-cycle state of stem cells determines cell fate propensity
-
Pauklin S, Vallier L. 2013. The cell-cycle state of stem cells determines cell fate propensity. Cell 155: 135-147.
-
(2013)
Cell
, vol.155
, pp. 135-147
-
-
Pauklin, S.1
Vallier, L.2
-
23
-
-
79951516056
-
A unique chromatin signature uncovers early developmental enhancers in humans
-
Rada-Iglesias A, Bajpai R, Swigut T, Brugmann SA, Flynn RA, Wysocka J. 2011. A unique chromatin signature uncovers early developmental enhancers in humans. Nature 470: 279-283.
-
(2011)
Nature
, vol.470
, pp. 279-283
-
-
Rada-Iglesias, A.1
Bajpai, R.2
Swigut, T.3
Brugmann, S.A.4
Flynn, R.A.5
Wysocka, J.6
-
24
-
-
33846019277
-
Methylation of lysine 4 on histone H3: Intricacy of writing and reading a single epigenetic mark
-
Ruthenburg AJ, Allis CD, Wysocka J. 2007. Methylation of lysine 4 on histone H3: intricacy of writing and reading a single epigenetic mark. Mol Cell 25: 15-30.
-
(2007)
Mol Cell
, vol.25
, pp. 15-30
-
-
Ruthenburg, A.J.1
Allis, C.D.2
Wysocka, J.3
-
25
-
-
81255160602
-
Jarid1b targets genes regulating development and is involved in neural differentiation
-
Schmitz SU, Albert M, Malatesta M, Morey L, Johansen JV, Bak M, Tommerup N, Abarrategui I, Helin K. 2011. Jarid1b targets genes regulating development and is involved in neural differentiation. EMBO J 30: 4586-4600.
-
(2011)
EMBO J
, vol.30
, pp. 4586-4600
-
-
Schmitz, S.U.1
Albert, M.2
Malatesta, M.3
Morey, L.4
Johansen, J.V.5
Bak, M.6
Tommerup, N.7
Abarrategui, I.8
Helin, K.9
-
26
-
-
33847084602
-
Genome regulation by polycomb and trithorax proteins
-
Schuettengruber B, Chourrout D, Vervoort M, Leblanc B, Cavalli G. 2007. Genome regulation by polycomb and trithorax proteins. Cell 128: 735-745.
-
(2007)
Cell
, vol.128
, pp. 735-745
-
-
Schuettengruber, B.1
Chourrout, D.2
Vervoort, M.3
Leblanc, B.4
Cavalli, G.5
-
27
-
-
37349052866
-
Inhibition of Activin/Nodal signaling promotes specification of human embryonic stem cells into neuroectoderm
-
Smith JR, Vallier L, Lupo G, Alexander M, Harris WA, Pedersen RA. 2008. Inhibition of Activin/Nodal signaling promotes specification of human embryonic stem cells into neuroectoderm. Dev Biol 313: 107-117.
-
(2008)
Dev Biol
, vol.313
, pp. 107-117
-
-
Smith, J.R.1
Vallier, L.2
Lupo, G.3
Alexander, M.4
Harris, W.A.5
Pedersen, R.A.6
-
28
-
-
34247226529
-
Gene function in mouse embryogenesis: Get set for gastrulation
-
Tam PPL, Loebel DAF. 2007. Gene function in mouse embryogenesis: get set for gastrulation. Nat Rev Genet 8: 368-381.
-
(2007)
Nat Rev Genet
, vol.8
, pp. 368-381
-
-
Tam, P.P.L.1
Loebel, D.A.F.2
-
29
-
-
79551592864
-
Pluripotency factors regulate definitive endoderm specification through eomesodermin
-
Teo A, Arnold SJ, Trotter MWB, Brown S, Ang LT, Chng Z, Robertson EJ, Dunn NR, Vallier L. 2011. Pluripotency factors regulate definitive endoderm specification through eomesodermin. Genes Dev 2: 238-250.
-
(2011)
Genes Dev
, vol.2
, pp. 238-250
-
-
Teo, A.1
Arnold, S.J.2
Trotter, M.W.B.3
Brown, S.4
Ang, L.T.5
Chng, Z.6
Robertson, E.J.7
Dunn, N.R.8
Vallier, L.9
-
30
-
-
84555196073
-
ChIP and Re-ChIP assays: Investigating interactions between regulatory proteins, histone modifications, and theDNA sequences to which they bind
-
Truax AD, Greer SF. 2012. ChIP and Re-ChIP assays: investigating interactions between regulatory proteins, histone modifications, and theDNA sequences to which they bind. Methods Mol Biol 809: 175-188.
-
(2012)
Methods Mol Biol
, vol.809
, pp. 175-188
-
-
Truax, A.D.1
Greer, S.F.2
-
31
-
-
27644486756
-
Activin/Nodal and FGF pathways cooperate to maintain pluripotency of human embryonic stem cells
-
Vallier L, Alexander M, Pedersen RA. 2005. Activin/Nodal and FGF pathways cooperate to maintain pluripotency of human embryonic stem cells. J Cell Sci 118: 4495-4509.
-
(2005)
J Cell Sci
, vol.118
, pp. 4495-4509
-
-
Vallier, L.1
Alexander, M.2
Pedersen, R.A.3
-
32
-
-
67650096520
-
Activin/Nodal signalling maintains pluripotency by controlling Nanog expression
-
Vallier L, Mendjan S, Brown S, Chng Z, Teo A, Smithers LE, Trotter MWB, Cho CH-H, Martinez A, Rugg-Gunn P, et al. 2009a. Activin/Nodal signalling maintains pluripotency by controlling Nanog expression. Development 136: 1339-1349.
-
(2009)
Development
, vol.136
, pp. 1339-1349
-
-
Vallier, L.1
Mendjan, S.2
Brown, S.3
Chng, Z.4
Teo, A.5
Smithers, L.E.6
Trotter, M.W.B.7
Cho, C.H.-H.8
Martinez, A.9
Rugg-Gunn, P.10
-
33
-
-
72849107786
-
Signaling pathways controlling pluripotency and early cell fate decisions of human induced pluripotent stem cells
-
Vallier L, Touboul T, Brown S, Cho C, Bilican B, Alexander M, Cedervall J, Chandran S, Ahrlund-Richter L, Weber A, et al. 2009b. Signaling pathways controlling pluripotency and early cell fate decisions of human induced pluripotent stem cells. Stem Cells 27: 2655-2666.
-
(2009)
Stem Cells
, vol.27
, pp. 2655-2666
-
-
Vallier, L.1
Touboul, T.2
Brown, S.3
Cho, C.4
Bilican, B.5
Alexander, M.6
Cedervall, J.7
Chandran, S.8
Ahrlund-Richter, L.9
Weber, A.10
-
34
-
-
67650567329
-
Early cell fate decisions of human embryonic stem cells and mouse epiblast stem cells are controlled by the same signalling pathways
-
Vallier L, Touboul T, Chng Z, Brimpari M, Hannan N, Millan E, Smithers LE, Trotter M, Rugg-Gunn P, Weber A, et al. 2009c. Early cell fate decisions of human embryonic stem cells and mouse epiblast stem cells are controlled by the same signalling pathways. PLoS One 4: e6082.
-
(2009)
PLoS One
, vol.4
-
-
Vallier, L.1
Touboul, T.2
Chng, Z.3
Brimpari, M.4
Hannan, N.5
Millan, E.6
Smithers, L.E.7
Trotter, M.8
Rugg-Gunn, P.9
Weber, A.10
-
35
-
-
84878199030
-
Quantitative dissection and stoichiometry determination of the human SET1/MLL histone methyltransferase complexes
-
Van Nuland R, Smits AH, Pallaki P, JansenPWTC, Vermeulen M, Timmers HTM. 2013.Quantitative dissection and stoichiometry determination of the human SET1/MLL histone methyltransferase complexes. Mol Cell Biol 33: 2067-2077.
-
(2013)
Mol Cell Biol
, vol.33
, pp. 2067-2077
-
-
Van Nuland, R.1
Smits, A.H.2
Pallaki, P.3
Jansen, P.W.T.C.4
Vermeulen, M.5
Timmers, H.T.M.6
-
36
-
-
84861982240
-
Bivalent histone modifications in early embryogenesis
-
Vastenhouw NL, Schier AF. 2012. Bivalent histone modifications in early embryogenesis. Curr Opin Cell Biol 24: 374-386.
-
(2012)
Curr Opin Cell Biol
, vol.24
, pp. 374-386
-
-
Vastenhouw, N.L.1
Schier, A.F.2
-
37
-
-
77956643239
-
Quantitative interaction proteomics and genome-wide profiling of epigenetic histone marks and their readers
-
Vermeulen M, Eberl HC, Matarese F, Marks H, Denissov S, Butter F, Lee KK, Olsen JV, Hyman AA, Stunnenberg HG, et al. 2010. Quantitative interaction proteomics and genome-wide profiling of epigenetic histone marks and their readers. Cell 142: 967-980.
-
(2010)
Cell
, vol.142
, pp. 967-980
-
-
Vermeulen, M.1
Eberl, H.C.2
Matarese, F.3
Marks, H.4
Denissov, S.5
Butter, F.6
Lee, K.K.7
Olsen, J.V.8
Hyman, A.A.9
Stunnenberg, H.G.10
-
38
-
-
84879260661
-
A double take on bivalent promoters
-
Voigt P, Tee W-W, Reinberg D. 2013. A double take on bivalent promoters. Genes Dev 27: 1318-1338.
-
(2013)
Genes Dev
, vol.27
, pp. 1318-1338
-
-
Voigt, P.1
Tee, W.-W.2
Reinberg, D.3
-
39
-
-
48149098004
-
NANOG is a direct target of TGFβ/activin-mediated SMAD signaling in human ESCs
-
Xu R-H, Sampsell-Barron TL, Gu F, Root S, Peck RM, Pan G, Yu J, Antosiewicz-Bourget J, Tian S, Stewart R, et al. 2008. NANOG is a direct target of TGFβ/activin-mediated SMAD signaling in human ESCs. Cell Stem Cell 3: 196-206.
-
(2008)
Cell Stem Cell
, vol.3
, pp. 196-206
-
-
Xu, R.-H.1
Sampsell-Barron, T.L.2
Gu, F.3
Root, S.4
Peck, R.M.5
Pan, G.6
Yu, J.7
Antosiewicz-Bourget, J.8
Tian, S.9
Stewart, R.10
-
40
-
-
84907271647
-
The DPY30 subunit in SET1/MLL complexes regulates the proliferation and differentiation of hematopoietic progenitor cells
-
Yang Z, Augustin J, Chang C, Hu J, Shah K, Chang C-W, Townes T, Jiang H. 2014. The DPY30 subunit in SET1/MLL complexes regulates the proliferation and differentiation of hematopoietic progenitor cells. Blood 124: 2025-2033.
-
(2014)
Blood
, vol.124
, pp. 2025-2033
-
-
Yang, Z.1
Augustin, J.2
Chang, C.3
Hu, J.4
Shah, K.5
Chang, C.-W.6
Townes, T.7
Jiang, H.8
-
41
-
-
79952660821
-
Control of the embryonic stem cell state
-
Young RA. 2011. Control of the embryonic stem cell state. Cell 144: 940-954.
-
(2011)
Cell
, vol.144
, pp. 940-954
-
-
Young, R.A.1
|