-
1
-
-
65149100167
-
Plant photosystem I design in the light of evolution
-
Amunts A, Nelson N (2009) Plant photosystem I design in the light of evolution. Structure 17: 637–650
-
(2009)
Structure
, vol.17
, pp. 637-650
-
-
Amunts, A.1
Nelson, N.2
-
2
-
-
0037054542
-
Characterization of Tbc2, a nucleus-encoded factor specifically required for translation of the chloroplast psbC mRNA in Chlamydomonas reinhardtii
-
Auchincloss AH, Zerges W, Perron K, Girard-Bascou J, Rochaix JD (2002) Characterization of Tbc2, a nucleus-encoded factor specifically required for translation of the chloroplast psbC mRNA in Chlamydomonas reinhardtii. J Cell Biol 157: 953–962
-
(2002)
J Cell Biol
, vol.157
, pp. 953-962
-
-
Auchincloss, A.H.1
Zerges, W.2
Perron, K.3
Girard-Bascou, J.4
Rochaix, J.D.5
-
3
-
-
0004265596
-
-
John Wiley and Sons, New York
-
Ausubel FA, Brent R, Kingston RE, Moore DD, Seidman JG, Smith JA, Struhl K (1998) Current Protocols inMolecular Biology. John Wiley and Sons, New York
-
(1998)
Current Protocols Inmolecular Biology
-
-
Ausubel, F.A.1
Brent, R.2
Kingston, R.E.3
Moore, D.D.4
Seidman, J.G.5
Smith, J.A.6
Struhl, K.7
-
4
-
-
31544447369
-
Two adjacent nuclear genes are required for functional complementation of a chloroplast trans-splicing mutant from Chlamydomonas reinhardtii
-
Balczun C, Bunse A, Hahn D, Bennoun P, Nickelsen J, Kück U (2005) Two adjacent nuclear genes are required for functional complementation of a chloroplast trans-splicing mutant from Chlamydomonas reinhardtii. Plant J 43: 636–648
-
(2005)
Plant J
, vol.43
, pp. 636-648
-
-
Balczun, C.1
Bunse, A.2
Hahn, D.3
Bennoun, P.4
Nickelsen, J.5
Kück, U.6
-
5
-
-
33746381670
-
Chloroplast heat shock protein Cpn60 from Chlamydomonas reinhardtii exhibits a novel function as a group II intron-specific RNA-binding protein
-
Balczun C, Bunse A, Schwarz C, Piotrowski M, Kück U (2006) Chloroplast heat shock protein Cpn60 from Chlamydomonas reinhardtii exhibits a novel function as a group II intron-specific RNA-binding protein. FEBS Lett 580: 4527–4532
-
(2006)
FEBS Lett
, vol.580
, pp. 4527-4532
-
-
Balczun, C.1
Bunse, A.2
Schwarz, C.3
Piotrowski, M.4
Kück, U.5
-
6
-
-
79953711431
-
Expression of plastid genes: Organelle-specific elaborations on a prokaryotic scaffold
-
Barkan A (2011) Expression of plastid genes: organelle-specific elaborations on a prokaryotic scaffold. Plant Physiol 155: 1520–1532
-
(2011)
Plant Physiol
, vol.155
, pp. 1520-1532
-
-
Barkan, A.1
-
7
-
-
84899745039
-
Pentatricopeptide repeat proteins in plants
-
Barkan A, Small I (2014) Pentatricopeptide repeat proteins in plants. Annu Rev Plant Biol 65: 415–442
-
(2014)
Annu Rev Plant Biol
, vol.65
, pp. 415-442
-
-
Barkan, A.1
Small, I.2
-
8
-
-
33845764296
-
A guided tour into subcellular colocalization analysis in light microscopy
-
Bolte S, Cordelières FP (2006) A guided tour into subcellular colocalization analysis in light microscopy. J Microsc 224: 213–232
-
(2006)
J Microsc
, vol.224
, pp. 213-232
-
-
Bolte, S.1
Cordelières, F.P.2
-
9
-
-
0034601028
-
The Nac2 gene of Chlamydomonas encodes a chloroplast TPR-like protein involved in psbD mRNA stability
-
Boudreau E, Nickelsen J, Lemaire SD, Ossenbühl F, Rochaix JD (2000) The Nac2 gene of Chlamydomonas encodes a chloroplast TPR-like protein involved in psbD mRNA stability. EMBO J 19: 3366–3376
-
(2000)
EMBO J
, vol.19
, pp. 3366-3376
-
-
Boudreau, E.1
Nickelsen, J.2
Lemaire, S.D.3
Ossenbühl, F.4
Rochaix, J.D.5
-
10
-
-
79952283901
-
The nucleus-encoded trans-acting factor MCA1 plays a critical role in the regulation of cytochrome f synthesis in Chlamydomonas chloroplasts
-
Boulouis A, Raynaud C, Bujaldon S, Aznar A, Wollman FA, Choquet Y (2011) The nucleus-encoded trans-acting factor MCA1 plays a critical role in the regulation of cytochrome f synthesis in Chlamydomonas chloroplasts. Plant Cell 23: 333–349
-
(2011)
Plant Cell
, vol.23
, pp. 333-349
-
-
Boulouis, A.1
Raynaud, C.2
Bujaldon, S.3
Aznar, A.4
Wollman, F.A.5
Choquet, Y.6
-
11
-
-
55249089750
-
Ferritin is required for rapid remodeling of the photosynthetic apparatus and minimizes photo-oxidative stress in response to iron availability in Chlamydomonas reinhardtii
-
Busch A, Rimbauld B, Naumann B, Rensch S, Hippler M (2008) Ferritin is required for rapid remodeling of the photosynthetic apparatus and minimizes photo-oxidative stress in response to iron availability in Chlamydomonas reinhardtii. Plant J 55: 201–211
-
(2008)
Plant J
, vol.55
, pp. 201-211
-
-
Busch, A.1
Rimbauld, B.2
Naumann, B.3
Rensch, S.4
Hippler, M.5
-
12
-
-
0024296483
-
Mutant phenotypes support a trans-splicing mechanism for the expression of the tripartite psaA gene in the C. Reinhardtii chloroplast
-
Choquet Y, Goldschmidt-Clermont M, Girard-Bascou J, Kück U, Bennoun P, Rochaix JD (1988) Mutant phenotypes support a trans-splicing mechanism for the expression of the tripartite psaA gene in the C. reinhardtii chloroplast. Cell 52: 903–913
-
(1988)
Cell
, vol.52
, pp. 903-913
-
-
Choquet, Y.1
Goldschmidt-Clermont, M.2
Girard-Bascou, J.3
Kück, U.4
Bennoun, P.5
Rochaix, J.D.6
-
13
-
-
0037010174
-
Translational regulations as specific traits of chloroplast gene expression
-
Choquet Y, Wollman FA (2002) Translational regulations as specific traits of chloroplast gene expression. FEBS Lett 529: 39–42
-
(2002)
FEBS Lett
, vol.529
, pp. 39-42
-
-
Choquet, Y.1
Wollman, F.A.2
-
14
-
-
78650245911
-
The CES process
-
In D Stern, EH Harris, Academic Press, Oxford
-
Choquet Y, Wollman FA (2009) The CES process. In D Stern, EH Harris, eds, The Chlamydomonas Sourcebook: Organellar and Metabolic Processes. Academic Press, Oxford, pp 1027–1064
-
(2009)
The Chlamydomonas Sourcebook: Organellar and Metabolic Processes
, pp. 1027-1064
-
-
Choquet, Y.1
Wollman, F.A.2
-
15
-
-
0348134869
-
Tab2 is a novel conserved RNA binding protein required for translation of the chloroplast psaB mRNA
-
Dauvillée D, Stampacchia O, Girard-Bascou J, Rochaix JD (2003) Tab2 is a novel conserved RNA binding protein required for translation of the chloroplast psaB mRNA. EMBO J 22: 6378–6388
-
(2003)
EMBO J
, vol.22
, pp. 6378-6388
-
-
Dauvillée, D.1
Stampacchia, O.2
Girard-Bascou, J.3
Rochaix, J.D.4
-
16
-
-
0037423885
-
Role of chloroplast protein kinase Stt7 in LHCII phosphorylation and state transition in Chlamydomonas
-
Depège N, Bellafiore S, Rochaix JD (2003) Role of chloroplast protein kinase Stt7 in LHCII phosphorylation and state transition in Chlamydomonas. Science 299: 1572–1575
-
(2003)
Science
, vol.299
, pp. 1572-1575
-
-
Depège, N.1
Bellafiore, S.2
Rochaix, J.D.3
-
17
-
-
0031910348
-
In vivo evidence for 59→39 exoribonuclease degradation of an unstable chloroplast mRNA
-
Drager RG, Girard-Bascou J, Choquet Y, Kindle KL, Stern DB (1998) In vivo evidence for 59→39 exoribonuclease degradation of an unstable chloroplast mRNA. Plant J 13: 85–96
-
(1998)
Plant J
, vol.13
, pp. 85-96
-
-
Drager, R.G.1
Girard-Bascou, J.2
Choquet, Y.3
Kindle, K.L.4
Stern, D.B.5
-
18
-
-
0033199033
-
59 to 39 exoribonucleolytic activity is a normal component of chloroplast mRNA decay pathways
-
Drager RG, Higgs DC, Kindle KL, Stern DB (1999) 59 to 39 exoribonucleolytic activity is a normal component of chloroplast mRNA decay pathways. Plant J 19: 521–531
-
(1999)
Plant J
, vol.19
, pp. 521-531
-
-
Drager, R.G.1
Higgs, D.C.2
Kindle, K.L.3
Stern, D.B.4
-
19
-
-
0036324267
-
Searching limiting steps in the expression of chloroplast-encoded proteins: Relations between gene copy number, transcription, transcript abundance and translation rate in the chloroplast of Chlamydomonas reinhardtii
-
Eberhard S, Drapier D, Wollman FA (2002) Searching limiting steps in the expression of chloroplast-encoded proteins: relations between gene copy number, transcription, transcript abundance and translation rate in the chloroplast of Chlamydomonas reinhardtii. Plant J 31: 149–160
-
(2002)
Plant J
, vol.31
, pp. 149-160
-
-
Eberhard, S.1
Drapier, D.2
Wollman, F.A.3
-
21
-
-
80052431194
-
Dual functions of the nucleus-encoded factor TDA1 in trapping and translation activation of atpA transcripts in Chlamydomonas reinhardtii chloroplasts
-
Eberhard S, Loiselay C, Drapier D, Bujaldon S, Girard-Bascou J, Kuras R, Choquet Y, Wollman FA (2011) Dual functions of the nucleus-encoded factor TDA1 in trapping and translation activation of atpA transcripts in Chlamydomonas reinhardtii chloroplasts. Plant J 67: 1055–1066
-
(2011)
Plant J
, vol.67
, pp. 1055-1066
-
-
Eberhard, S.1
Loiselay, C.2
Drapier, D.3
Bujaldon, S.4
Girard-Bascou, J.5
Kuras, R.6
Choquet, Y.7
Wollman, F.A.8
-
22
-
-
11744368403
-
Studies on mutants deficient in the photosystem I reaction centers in Chlamydomonas reinhardtii
-
Girard J, Chua NH, Bennoun P, Schmidt G, Delosme M (1980) Studies on mutants deficient in the photosystem I reaction centers in Chlamydomonas reinhardtii. Curr Genet 2: 215–221
-
(1980)
Curr Genet
, vol.2
, pp. 215-221
-
-
Girard, J.1
Chua, N.H.2
Bennoun, P.3
Schmidt, G.4
Delosme, M.5
-
23
-
-
33750976695
-
A nucleosome assembly protein-like polypeptide binds to chloroplast group II intron RNA in Chlamydomonas reinhardtii
-
Glanz S, Bunse A, Wimbert A, Balczun C, Kück U (2006) A nucleosome assembly protein-like polypeptide binds to chloroplast group II intron RNA in Chlamydomonas reinhardtii. Nucleic Acids Res 34: 5337–5351
-
(2006)
Nucleic Acids Res
, vol.34
, pp. 5337-5351
-
-
Glanz, S.1
Bunse, A.2
Wimbert, A.3
Balczun, C.4
Kück, U.5
-
24
-
-
84856270220
-
Raa4 is a trans-splicing factor that specifically binds chloroplast tscA intron RNA
-
Glanz S, Jacobs J, Kock V, Mishra A, Kuck U (2012) Raa4 is a trans-splicing factor that specifically binds chloroplast tscA intron RNA. Plant J 69: 421–431
-
(2012)
Plant J
, vol.69
, pp. 421-431
-
-
Glanz, S.1
Jacobs, J.2
Kock, V.3
Mishra, A.4
Kuck, U.5
-
25
-
-
0025766849
-
Transgenic expression of aminoglycoside adenine transferase in the chloroplast: A selectable marker of site-directed transformation of Chlamydomonas
-
Goldschmidt-Clermont M (1991) Transgenic expression of aminoglycoside adenine transferase in the chloroplast: a selectable marker of site-directed transformation of Chlamydomonas. Nucleic Acids Res 19: 4083–4089
-
(1991)
Nucleic Acids Res
, vol.19
, pp. 4083-4089
-
-
Goldschmidt-Clermont, M.1
-
26
-
-
0025803701
-
A small chloroplast RNA may be required for trans-splicing in Chlamydomonas reinhardtii
-
Goldschmidt-Clermont M, Choquet Y, Girard-Bascou J, Michel F, Schirmer- Rahire M, Rochaix JD (1991) A small chloroplast RNA may be required for trans-splicing in Chlamydomonas reinhardtii. Cell 65: 135–143
-
(1991)
Cell
, vol.65
, pp. 135-143
-
-
Goldschmidt-Clermont, M.1
Choquet, Y.2
Girard-Bascou, J.3
Michel, F.4
Schirmer-Rahire, M.5
Rochaix, J.D.6
-
28
-
-
0023042758
-
Sequence, evolution and differential expression of the two genes encoding variant small subunits of ribulose bisphosphate carboxylase/oxygenase in Chlamydomonas reinhardtii
-
Goldschmidt-Clermont M, Rahire M (1986) Sequence, evolution and differential expression of the two genes encoding variant small subunits of ribulose bisphosphate carboxylase/oxygenase in Chlamydomonas reinhardtii. J Mol Biol 191: 421–432
-
(1986)
J Mol Biol
, vol.191
, pp. 421-432
-
-
Goldschmidt-Clermont, M.1
Rahire, M.2
-
29
-
-
78149403325
-
Cell biology. Irremediable complexity?
-
Gray MW, Lukes J, Archibald JM, Keeling PJ, Doolittle WF (2010) Cell biology. Irremediable complexity? Science 330: 920–921
-
(2010)
Science
, vol.330
, pp. 920-921
-
-
Gray, M.W.1
Lukes, J.2
Archibald, J.M.3
Keeling, P.J.4
Doolittle, W.F.5
-
30
-
-
0031702847
-
A single nuclear locus is involved in both chloroplast RNA trans-splicing and 39 end processing
-
Hahn D, Nickelsen J, Hackert A, Kuck U (1998) A single nuclear locus is involved in both chloroplast RNA trans-splicing and 39 end processing. Plant J 15: 575–581
-
(1998)
Plant J
, vol.15
, pp. 575-581
-
-
Hahn, D.1
Nickelsen, J.2
Hackert, A.3
Kuck, U.4
-
31
-
-
84897071234
-
Helical repeats modular proteins are major players for organelle gene expression
-
Hammani K, Bonnard G, Bouchoucha A, Gobert A, Pinker F, Salinas T, Giegé P (2014) Helical repeats modular proteins are major players for organelle gene expression. Biochimie 100: 141–150
-
(2014)
Biochimie
, vol.100
, pp. 141-150
-
-
Hammani, K.1
Bonnard, G.2
Bouchoucha, A.3
Gobert, A.4
Pinker, F.5
Salinas, T.6
Giegé, P.7
-
32
-
-
84859602756
-
RNA binding and RNA remodeling activities of the half-a-tetratricopeptide (HAT) protein HCF107 underlie its effects on gene expression
-
Hammani K, Cook WB, Barkan A (2012) RNA binding and RNA remodeling activities of the half-a-tetratricopeptide (HAT) protein HCF107 underlie its effects on gene expression. Proc Natl Acad Sci USA 109: 5651–5656
-
(2012)
Proc Natl Acad Sci USA
, vol.109
, pp. 5651-5656
-
-
Hammani, K.1
Cook, W.B.2
Barkan, A.3
-
34
-
-
84885107729
-
The metabolic status drives acclimation of iron deficiency responses in Chlamydomonas reinhardtii as revealed by proteomics based hierarchical clustering and reverse genetics
-
Höhner R, Barth J, Magneschi L, Jaeger D, Niehues A, Bald T, Grossman A, Fufezan C, Hippler M (2013) The metabolic status drives acclimation of iron deficiency responses in Chlamydomonas reinhardtii as revealed by proteomics based hierarchical clustering and reverse genetics. Mol Cell Proteomics 12: 2774–2790
-
(2013)
Mol Cell Proteomics
, vol.12
, pp. 2774-2790
-
-
Höhner, R.1
Barth, J.2
Magneschi, L.3
Jaeger, D.4
Niehues, A.5
Bald, T.6
Grossman, A.7
Fufezan, C.8
Hippler, M.9
-
35
-
-
0032831814
-
The catalytic group-I introns of the psbA gene of Chlamydomonas reinhardtii: Core structures, ORFs and evolutionary implications
-
Holloway SP, Deshpande NN, Herrin DL (1999) The catalytic group-I introns of the psbA gene of Chlamydomonas reinhardtii: core structures, ORFs and evolutionary implications. Curr Genet 36: 69–78
-
(1999)
Curr Genet
, vol.36
, pp. 69-78
-
-
Holloway, S.P.1
Deshpande, N.N.2
Herrin, D.L.3
-
36
-
-
34547560275
-
WoLF PSORT: Protein localization predictor
-
Horton P, Park KJ, Obayashi T, Fujita N, Harada H, Adams-Collier CJ, Nakai K (2007) WoLF PSORT: protein localization predictor. Nucleic Acids Res 35: W585–W587
-
(2007)
Nucleic Acids Res
, vol.35
-
-
Horton, P.1
Park, K.J.2
Obayashi, T.3
Fujita, N.4
Harada, H.5
Adams-Collier, C.J.6
Nakai, K.7
-
37
-
-
84880057307
-
Identification of a chloroplast ribonucleoprotein complex containing trans-splicing factors, intron RNA, and novel components
-
Jacobs J, Marx C, Kock V, Reifschneider O, Fränzel B, Krisp C, Wolters D, Kück U (2013) Identification of a chloroplast ribonucleoprotein complex containing trans-splicing factors, intron RNA, and novel components. Mol Cell Proteomics 12: 1912–1925
-
(2013)
Mol Cell Proteomics
, vol.12
, pp. 1912-1925
-
-
Jacobs, J.1
Marx, C.2
Kock, V.3
Reifschneider, O.4
Fränzel, B.5
Krisp, C.6
Wolters, D.7
Kück, U.8
-
38
-
-
0027583864
-
Construction of a Chlamydomonas reinhardtii mutant with an intronless psbA gene
-
Johanningmeier U, Heiss S (1993) Construction of a Chlamydomonas reinhardtii mutant with an intronless psbA gene. Plant Mol Biol 22: 91–99
-
(1993)
Plant Mol Biol
, vol.22
, pp. 91-99
-
-
Johanningmeier, U.1
Heiss, S.2
-
39
-
-
0025117612
-
High-frequency nuclear transformation of Chlamydomonas reinhardtii
-
Kindle KL (1990) High-frequency nuclear transformation of Chlamydomonas reinhardtii. Proc Natl Acad Sci USA 87: 1228–1232
-
(1990)
Proc Natl Acad Sci USA
, vol.87
, pp. 1228-1232
-
-
Kindle, K.L.1
-
40
-
-
84897058981
-
RAP, the sole octotricopeptide repeat protein in Arabidopsis, is required for chloroplast 16S rRNA maturation
-
Kleinknecht L, Wang F, Stübe R, Philippar K, Nickelsen J, Bohne AV (2014) RAP, the sole octotricopeptide repeat protein in Arabidopsis, is required for chloroplast 16S rRNA maturation. Plant Cell 26: 777–787
-
(2014)
Plant Cell
, vol.26
, pp. 777-787
-
-
Kleinknecht, L.1
Wang, F.2
Stübe, R.3
Philippar, K.4
Nickelsen, J.5
Bohne, A.V.6
-
41
-
-
28544443830
-
Relationship between mRNA levels and protein accumulation in a chloroplast promoter-mutant of Chlamydomonas reinhardtii
-
Klinkert B, Schwarz C, Pohlmann S, Pierre Y, Girard-Bascou J, Nickelsen J (2005) Relationship between mRNA levels and protein accumulation in a chloroplast promoter-mutant of Chlamydomonas reinhardtii. Mol Genet Genomics 274: 637–643
-
(2005)
Mol Genet Genomics
, vol.274
, pp. 637-643
-
-
Klinkert, B.1
Schwarz, C.2
Pohlmann, S.3
Pierre, Y.4
Girard-Bascou, J.5
Nickelsen, J.6
-
42
-
-
0024965007
-
Mutation at the Chlamydomonas nuclear NAC2 locus specifically affects stability of the chloroplast psbD transcript encoding polypeptide D2 of PS II
-
Kuchka MR, Goldschmidt-Clermont M, van Dillewijn J, Rochaix JD (1989) Mutation at the Chlamydomonas nuclear NAC2 locus specifically affects stability of the chloroplast psbD transcript encoding polypeptide D2 of PS II. Cell 58: 869–876
-
(1989)
Cell
, vol.58
, pp. 869-876
-
-
Kuchka, M.R.1
Goldschmidt-Clermont, M.2
Van Dillewijn, J.3
Rochaix, J.D.4
-
43
-
-
0000221783
-
Structural and transcription analysis of two homologous genes for the P700 chlorophyll a-apoproteins in Chlamydomonas reinhardtii: Evidence for in vivo trans-splicing
-
Kück U, Choquet Y, Schneider M, Dron M, Bennoun P (1987) Structural and transcription analysis of two homologous genes for the P700 chlorophyll a-apoproteins in Chlamydomonas reinhardtii: evidence for in vivo trans-splicing. EMBO J 6: 2185–2195
-
(1987)
EMBO J
, vol.6
, pp. 2185-2195
-
-
Kück, U.1
Choquet, Y.2
Schneider, M.3
Dron, M.4
Bennoun, P.5
-
44
-
-
0031435688
-
Molecular genetic identification of a pathway for heme binding to cytochrome b6
-
Kuras R, de Vitry C, Choquet Y, Girard-Bascou J, Culler D, Büschlen S, Merchant S, Wollman FA (1997) Molecular genetic identification of a pathway for heme binding to cytochrome b6. J Biol Chem 272: 32427–32435
-
(1997)
J Biol Chem
, vol.272
, pp. 32427-32435
-
-
Kuras, R.1
De Vitry, C.2
Choquet, Y.3
Girard-Bascou, J.4
Culler, D.5
Büschlen, S.6
Merchant, S.7
Wollman, F.A.8
-
45
-
-
6344228187
-
RAP: A putative RNA-binding domain
-
Lee I, Hong W (2004) RAP: a putative RNA-binding domain. Trends Biochem Sci 29: 567–570
-
(2004)
Trends Biochem Sci
, vol.29
, pp. 567-570
-
-
Lee, I.1
Hong, W.2
-
46
-
-
84926188823
-
On the complexity of chloroplast RNA metabolism: PsaA transsplicing can be bypassed in Chlamydomonas
-
Lefebvre-Legendre L, Merendino L, Rivier C, Goldschmidt-Clermont M (2014) On the complexity of chloroplast RNA metabolism: psaA transsplicing can be bypassed in Chlamydomonas. Mol Biol Evol 31: 2697–2707
-
(2014)
Mol Biol Evol
, vol.31
, pp. 2697-2707
-
-
Lefebvre-Legendre, L.1
Merendino, L.2
Rivier, C.3
Goldschmidt-Clermont, M.4
-
47
-
-
50249158627
-
Molecular identification and function of cis- and trans-acting determinants for petA transcript stability in Chlamydomonas reinhardtii chloroplasts
-
Loiselay C, Gumpel NJ, Girard-Bascou J, Watson AT, Purton S, Wollman FA, Choquet Y (2008) Molecular identification and function of cis- and trans-acting determinants for petA transcript stability in Chlamydomonas reinhardtii chloroplasts. Mol Cell Biol 28: 5529–5542
-
(2008)
Mol Cell Biol
, vol.28
, pp. 5529-5542
-
-
Loiselay, C.1
Gumpel, N.J.2
Girard-Bascou, J.3
Watson, A.T.4
Purton, S.5
Wollman, F.A.6
Choquet, Y.7
-
48
-
-
84898933453
-
Small RNAs reveal two target sites of the RNA-maturation factor Mbb1 in the chloroplast of Chlamydomonas
-
Loizeau K, Qu Y, Depp S, Fiechter V, Ruwe H, Lefebvre-Legendre L, Schmitz-Linneweber C, Goldschmidt-Clermont M (2014) Small RNAs reveal two target sites of the RNA-maturation factor Mbb1 in the chloroplast of Chlamydomonas. Nucleic Acids Res 42: 3286–3297
-
(2014)
Nucleic Acids Res
, vol.42
, pp. 3286-3297
-
-
Loizeau, K.1
Qu, Y.2
Depp, S.3
Fiechter, V.4
Ruwe, H.5
Lefebvre-Legendre, L.6
Schmitz-Linneweber, C.7
Goldschmidt-Clermont, M.8
-
49
-
-
77955267919
-
The Origins of Genome Architecture
-
Inc., Sunderland, MA
-
Lynch M (2007) The Origins of Genome Architecture. Sinauer Associates, Inc., Sunderland, MA
-
(2007)
Sinauer Associates
-
-
Lynch, M.1
-
50
-
-
53149139334
-
Complex chloroplast RNA metabolism: Just debugging the genetic programme?
-
Maier UG, Bozarth A, Funk HT, Zauner S, Rensing SA, Schmitz-Linneweber C, Börner T, Tillich M (2008) Complex chloroplast RNA metabolism: just debugging the genetic programme? BMC Biol 6: 36
-
(2008)
BMC Biol
, vol.6
-
-
Maier, U.G.1
Bozarth, A.2
Funk, H.T.3
Zauner, S.4
Rensing, S.A.5
Schmitz-Linneweber, C.6
Börner, T.7
Tillich, M.8
-
51
-
-
31544468450
-
A novel multifunctional factor involved in trans-splicing of chloroplast introns in Chlamydomonas
-
Merendino L, Perron K, Rahire M, Howald I, Rochaix JD, Goldschmidt- Clermont M (2006) A novel multifunctional factor involved in trans-splicing of chloroplast introns in Chlamydomonas. Nucleic Acids Res 34: 262–274
-
(2006)
Nucleic Acids Res
, vol.34
, pp. 262-274
-
-
Merendino, L.1
Perron, K.2
Rahire, M.3
Howald, I.4
Rochaix, J.D.5
Goldschmidt-Clermont, M.6
-
52
-
-
0028251309
-
A robust protocol for site-directed mutagenesis of the D1 protein in Chlamydomonas reinhardtii
-
Minagawa J, Crofts A (1994) A robust protocol for site-directed mutagenesis of the D1 protein in Chlamydomonas reinhardtii. Photosynth Res 42: 121–131
-
(1994)
Photosynth Res
, vol.42
, pp. 121-131
-
-
Minagawa, J.1
Crofts, A.2
-
53
-
-
12244262259
-
Adaptation to Fe-deficiency requires remodeling of the photosynthetic apparatus
-
Moseley JL, Allinger T, Herzog S, Hoerth P, Wehinger E, Merchant S, Hippler M (2002) Adaptation to Fe-deficiency requires remodeling of the photosynthetic apparatus. EMBO J 21: 6709–6720
-
(2002)
EMBO J
, vol.21
, pp. 6709-6720
-
-
Moseley, J.L.1
Allinger, T.2
Herzog, S.3
Hoerth, P.4
Wehinger, E.5
Merchant, S.6
Hippler, M.7
-
54
-
-
20144382680
-
N-terminal processing of Lhca3 Is a key step in remodeling of the photosystem I-lightharvesting complex under iron deficiency in Chlamydomonas reinhardtii
-
Naumann B, Stauber EJ, Busch A, Sommer F, Hippler M (2005) N-terminal processing of Lhca3 Is a key step in remodeling of the photosystem I-lightharvesting complex under iron deficiency in Chlamydomonas reinhardtii. J Biol Chem 280: 20431–20441
-
(2005)
J Biol Chem
, vol.280
, pp. 20431-20441
-
-
Naumann, B.1
Stauber, E.J.2
Busch, A.3
Sommer, F.4
Hippler, M.5
-
55
-
-
0035542781
-
Functional studies of Ycf3: Its role in assembly of photosystem I and interactions with some of its subunits
-
Naver H, Boudreau E, Rochaix JD (2001) Functional studies of Ycf3: its role in assembly of photosystem I and interactions with some of its subunits. Plant Cell 13: 2731–2745
-
(2001)
Plant Cell
, vol.13
, pp. 2731-2745
-
-
Naver, H.1
Boudreau, E.2
Rochaix, J.D.3
-
56
-
-
0033133576
-
Identification of cis-acting RNA leader elements required for chloroplast psbD gene expression in Chlamydomonas
-
Nickelsen J, Fleischmann M, Boudreau E, Rahire M, Rochaix JD (1999) Identification of cis-acting RNA leader elements required for chloroplast psbD gene expression in Chlamydomonas. Plant Cell 11: 957–970
-
(1999)
Plant Cell
, vol.11
, pp. 957-970
-
-
Nickelsen, J.1
Fleischmann, M.2
Boudreau, E.3
Rahire, M.4
Rochaix, J.D.5
-
57
-
-
70349849765
-
Effects of site-directed mutations in the chloroplast-encoded Ycf4 gene on PSI complex assembly in the green alga Chlamydomonas reinhardtii
-
Onishi T, Takahashi Y (2009) Effects of site-directed mutations in the chloroplast-encoded Ycf4 gene on PSI complex assembly in the green alga Chlamydomonas reinhardtii. Plant Cell Physiol 50: 1750–1760
-
(2009)
Plant Cell Physiol
, vol.50
, pp. 1750-1760
-
-
Onishi, T.1
Takahashi, Y.2
-
58
-
-
70349705756
-
Biochemical and structural studies of the large Ycf4-photosystem I assembly complex of the green alga Chlamydomonas reinhardtii
-
Ozawa S, Nield J, Terao A, Stauber EJ, Hippler M, Koike H, Rochaix JD, Takahashi Y (2009) Biochemical and structural studies of the large Ycf4-photosystem I assembly complex of the green alga Chlamydomonas reinhardtii. Plant Cell 21: 2424–2442
-
(2009)
Plant Cell
, vol.21
, pp. 2424-2442
-
-
Ozawa, S.1
Nield, J.2
Terao, A.3
Stauber, E.J.4
Hippler, M.5
Koike, H.6
Rochaix, J.D.7
Takahashi, Y.8
-
59
-
-
84864451609
-
Fe sparing and Fe recycling contribute to increased superoxide dismutase capacity in iron-starved Chlamydomonas reinhardtii
-
Page MD, Allen MD, Kropat J, Urzica EI, Karpowicz SJ, Hsieh SI, Loo JA, Merchant SS (2012) Fe sparing and Fe recycling contribute to increased superoxide dismutase capacity in iron-starved Chlamydomonas reinhardtii. Plant Cell 24: 2649–2665
-
(2012)
Plant Cell
, vol.24
, pp. 2649-2665
-
-
Page, M.D.1
Allen, M.D.2
Kropat, J.3
Urzica, E.I.4
Karpowicz, S.J.5
Hsieh, S.I.6
Loo, J.A.7
Merchant, S.S.8
-
60
-
-
0033571587
-
A factor related to pseudouridine synthases is required for chloroplast group II intron trans-splicing in Chlamydomonas reinhardtii
-
Perron K, Goldschmidt-Clermont M, Rochaix JD (1999) A factor related to pseudouridine synthases is required for chloroplast group II intron trans-splicing in Chlamydomonas reinhardtii. Embo J 18: 6481–6490
-
(1999)
Embo J
, vol.18
, pp. 6481-6490
-
-
Perron, K.1
Goldschmidt-Clermont, M.2
Rochaix, J.D.3
-
61
-
-
1642488239
-
A multiprotein complex involved in chloroplast group II intron splicing
-
Perron K, Goldschmidt-Clermont M, Rochaix JD (2004) A multiprotein complex involved in chloroplast group II intron splicing. RNA 10: 704–710
-
(2004)
RNA
, vol.10
, pp. 704-710
-
-
Perron, K.1
Goldschmidt-Clermont, M.2
Rochaix, J.D.3
-
62
-
-
79960217385
-
Elimination of a group II intron from a plastid gene causes a mutant phenotype
-
Petersen K, Schöttler MA, Karcher D, Thiele W, Bock R (2011) Elimination of a group II intron from a plastid gene causes a mutant phenotype. Nucleic Acids Res 39: 5181–5192
-
(2011)
Nucleic Acids Res
, vol.39
, pp. 5181-5192
-
-
Petersen, K.1
Schöttler, M.A.2
Karcher, D.3
Thiele, W.4
Bock, R.5
-
63
-
-
67651171227
-
Site-specific binding of a PPR protein defines and stabilizes 59 and 39 mRNA termini in chloroplasts
-
Pfalz J, Bayraktar OA, Prikryl J, Barkan A (2009) Site-specific binding of a PPR protein defines and stabilizes 59 and 39 mRNA termini in chloroplasts. EMBO J 28: 2042–2052
-
(2009)
EMBO J
, vol.28
, pp. 2042-2052
-
-
Pfalz, J.1
Bayraktar, O.A.2
Prikryl, J.3
Barkan, A.4
-
64
-
-
78651068887
-
Mechanism of RNA stabilization and translational activation by a pentatricopeptide repeat protein
-
Prikryl J, Rojas M, Schuster G, Barkan A (2011) Mechanism of RNA stabilization and translational activation by a pentatricopeptide repeat protein. Proc Natl Acad Sci USA 108: 415–420
-
(2011)
Proc Natl Acad Sci USA
, vol.108
, pp. 415-420
-
-
Prikryl, J.1
Rojas, M.2
Schuster, G.3
Barkan, A.4
-
65
-
-
0028369675
-
Complementation of a Chlamydomonas reinhardtii mutant using a genomic cosmid library
-
Purton S, Rochaix JD (1994) Complementation of a Chlamydomonas reinhardtii mutant using a genomic cosmid library. Plant Mol Biol 24: 533–537
-
(1994)
Plant Mol Biol
, vol.24
, pp. 533-537
-
-
Purton, S.1
Rochaix, J.D.2
-
66
-
-
84868488929
-
Identification of an OPR protein involved in the translation initiation of the PsaB subunit of photosystem I
-
Rahire M, Laroche F, Cerutti L, Rochaix JD (2012) Identification of an OPR protein involved in the translation initiation of the PsaB subunit of photosystem I. Plant J 72: 652–661
-
(2012)
Plant J
, vol.72
, pp. 652-661
-
-
Rahire, M.1
Laroche, F.2
Cerutti, L.3
Rochaix, J.D.4
-
67
-
-
84874513053
-
Repression of essential chloroplast genes reveals new signaling pathways and regulatory feedback loops in Chlamydomonas
-
Ramundo S, Rahire M, Schaad O, Rochaix JD (2013) Repression of essential chloroplast genes reveals new signaling pathways and regulatory feedback loops in Chlamydomonas. Plant Cell 25: 167–186
-
(2013)
Plant Cell
, vol.25
, pp. 167-186
-
-
Ramundo, S.1
Rahire, M.2
Schaad, O.3
Rochaix, J.D.4
-
68
-
-
34547460726
-
Evidence for regulatory function of nucleus-encoded factors on mRNA stabilization and translation in the chloroplast
-
Raynaud C, Loiselay C, Wostrikoff K, Kuras R, Girard-Bascou J, Wollman FA, Choquet Y (2007) Evidence for regulatory function of nucleus-encoded factors on mRNA stabilization and translation in the chloroplast. Proc Natl Acad Sci USA 104: 9093–9098
-
(2007)
Proc Natl Acad Sci USA
, vol.104
, pp. 9093-9098
-
-
Raynaud, C.1
Loiselay, C.2
Wostrikoff, K.3
Kuras, R.4
Girard-Bascou, J.5
Wollman, F.A.6
Choquet, Y.7
-
69
-
-
0035794689
-
Identification of an RNA-protein complex involved in chloroplast group II intron transsplicing in Chlamydomonas reinhardtii
-
Rivier C, Goldschmidt-Clermont M, Rochaix JD (2001) Identification of an RNA-protein complex involved in chloroplast group II intron transsplicing in Chlamydomonas reinhardtii. EMBO J 20: 1765–1773
-
(2001)
EMBO J
, vol.20
, pp. 1765-1773
-
-
Rivier, C.1
Goldschmidt-Clermont, M.2
Rochaix, J.D.3
-
70
-
-
0002805929
-
Molecular biology of Chlamydomonas
-
CH Shaw, ed, IRL Press, Oxford, UK
-
Rochaix JD, Mayfield S, Goldschmidt-Clermont M, Erickson J (1988) Molecular biology of Chlamydomonas. In CH Shaw, ed, Plant Molecular Biology, A Practical Approach. IRL Press, Oxford, UK, pp 253–276
-
(1988)
Plant Molecular Biology, a Practical Approach
, pp. 253-276
-
-
Rochaix, J.D.1
Mayfield, S.2
Goldschmidt-Clermont, M.3
Erickson, J.4
-
71
-
-
84860147226
-
Short non-coding RNA fragments accumulating in chloroplasts: Footprints of RNA binding proteins?
-
Ruwe H, Schmitz-Linneweber C (2012) Short non-coding RNA fragments accumulating in chloroplasts: footprints of RNA binding proteins? Nucleic Acids Res 40: 3106–3116
-
(2012)
Nucleic Acids Res
, vol.40
, pp. 3106-3116
-
-
Ruwe, H.1
Schmitz-Linneweber, C.2
-
72
-
-
32944475665
-
Pigment deficiency in nightshade/tobacco cybrids is caused by the failure to edit the plastid ATPase a-subunit mRNA
-
Schmitz-Linneweber C, Kushnir S, Babiychuk E, Poltnigg P, Herrmann RG, Maier RM (2005) Pigment deficiency in nightshade/tobacco cybrids is caused by the failure to edit the plastid ATPase a-subunit mRNA. Plant Cell 17: 1815–1828
-
(2005)
Plant Cell
, vol.17
, pp. 1815-1828
-
-
Schmitz-Linneweber, C.1
Kushnir, S.2
Babiychuk, E.3
Poltnigg, P.4
Herrmann, R.G.5
Maier, R.M.6
-
73
-
-
37849006499
-
Synthesis of the D2 protein of photosystem II in Chlamydomonas is controlled by a high molecular mass complex containing the RNA stabilization factor Nac2 and the translational activator RBP40
-
Schwarz C, Elles I, Kortmann J, Piotrowski M, Nickelsen J (2007) Synthesis of the D2 protein of photosystem II in Chlamydomonas is controlled by a high molecular mass complex containing the RNA stabilization factor Nac2 and the translational activator RBP40. Plant Cell 19: 3627–3639
-
(2007)
Plant Cell
, vol.19
, pp. 3627-3639
-
-
Schwarz, C.1
Elles, I.2
Kortmann, J.3
Piotrowski, M.4
Nickelsen, J.5
-
74
-
-
0031893765
-
High-efficiency transformation of Chlamydomonas reinhardtii by electroporation
-
Shimogawara K, Fujiwara S, Grossman A, Usuda H (1998) High-efficiency transformation of Chlamydomonas reinhardtii by electroporation. Genetics 148: 1821–1828
-
(1998)
Genetics
, vol.148
, pp. 1821-1828
-
-
Shimogawara, K.1
Fujiwara, S.2
Grossman, A.3
Usuda, H.4
-
75
-
-
0031131632
-
A nuclear-encoded function essential for translation of the chloroplast psaB mRNA in Chlamydomonas
-
Stampacchia O, Girard-Bascou J, Zanasco JL, Zerges W, Bennoun P, Rochaix JD (1997) A nuclear-encoded function essential for translation of the chloroplast psaB mRNA in Chlamydomonas. Plant Cell 9: 773–782
-
(1997)
Plant Cell
, vol.9
, pp. 773-782
-
-
Stampacchia, O.1
Girard-Bascou, J.2
Zanasco, J.L.3
Zerges, W.4
Bennoun, P.5
Rochaix, J.D.6
-
77
-
-
84869020793
-
PredAlgo: A new subcellular localization prediction tool dedicated to green algae
-
Tardif M, Atteia A, Specht M, Cogne G, Rolland N, Brugière S, Hippler M, Ferro M, Bruley C, Peltier G, et al (2012) PredAlgo: a new subcellular localization prediction tool dedicated to green algae. Mol Biol Evol 29: 3625–3639
-
(2012)
Mol Biol Evol
, vol.29
, pp. 3625-3639
-
-
Tardif, M.1
Atteia, A.2
Specht, M.3
Cogne, G.4
Rolland, N.5
Brugière, S.6
Hippler, M.7
Ferro, M.8
Bruley, C.9
Peltier, G.10
-
78
-
-
77953705848
-
Trophic status of Chlamydomonas reinhardtii influences the impact of iron deficiency on photosynthesis
-
Terauchi AM, Peers G, Kobayashi MC, Niyogi KK, Merchant SS (2010) Trophic status of Chlamydomonas reinhardtii influences the impact of iron deficiency on photosynthesis. Photosynth Res 105: 39–49
-
(2010)
Photosynth Res
, vol.105
, pp. 39-49
-
-
Terauchi, A.M.1
Peers, G.2
Kobayashi, M.C.3
Niyogi, K.K.4
Merchant, S.S.5
-
80
-
-
37849013494
-
Photosystem II assembly and repair are differentially localized in Chlamydomonas
-
Uniacke J, Zerges W (2007) Photosystem II assembly and repair are differentially localized in Chlamydomonas. Plant Cell 19: 3640–3654
-
(2007)
Plant Cell
, vol.19
, pp. 3640-3654
-
-
Uniacke, J.1
Zerges, W.2
-
81
-
-
84870706076
-
Systems and trans-system level analysis identifies conserved iron deficiency responses in the plant lineage
-
Urzica EI, Casero D, Yamasaki H, Hsieh SI, Adler LN, Karpowicz SJ, Blaby-Haas CE, Clarke SG, Loo JA, Pellegrini M, et al (2012) Systems and trans-system level analysis identifies conserved iron deficiency responses in the plant lineage. Plant Cell 24: 3921–3948
-
(2012)
Plant Cell
, vol.24
, pp. 3921-3948
-
-
Urzica, E.I.1
Casero, D.2
Yamasaki, H.3
Hsieh, S.I.4
Adler, L.N.5
Karpowicz, S.J.6
Blaby-Haas, C.E.7
Clarke, S.G.8
Loo, J.A.9
Pellegrini, M.10
-
82
-
-
0034687823
-
Characterization of Mbb1, a nucleus-encoded tetratricopeptide-like repeat protein required for expression of the chloroplast psbB/psbT/psbH gene cluster in Chlamydomonas reinhardtii
-
Vaistij FE, Boudreau E, Lemaire SD, Goldschmidt-Clermont M, Rochaix JD (2000a) Characterization of Mbb1, a nucleus-encoded tetratricopeptide-like repeat protein required for expression of the chloroplast psbB/psbT/psbH gene cluster in Chlamydomonas reinhardtii. Proc Natl Acad Sci USA 97: 14813–14818
-
(2000)
Proc Natl Acad Sci USA
, vol.97
, pp. 14813-14818
-
-
Vaistij, F.E.1
Boudreau, E.2
Lemaire, S.D.3
Goldschmidt-Clermont, M.4
Rochaix, J.D.5
-
83
-
-
0034029659
-
Stability determinants in the chloroplast psbB/T/H mRNAs of Chlamydomonas reinhardtii
-
Vaistij FE, Goldschmidt-Clermont M, Wostrikoff K, Rochaix JD (2000b) Stability determinants in the chloroplast psbB/T/H mRNAs of Chlamydomonas reinhardtii. Plant J 21: 469–482
-
(2000)
Plant J
, vol.21
, pp. 469-482
-
-
Vaistij, F.E.1
Goldschmidt-Clermont, M.2
Wostrikoff, K.3
Rochaix, J.D.4
-
84
-
-
84896899282
-
Nitric oxide-triggered remodeling of chloroplast bioenergetics and thylakoid proteins upon nitrogen starvation in Chlamydomonas reinhardtii
-
Wei L, Derrien B, Gautier A, Houille-Vernes L, Boulouis A, Saint-Marcoux D, Malnoë A, Rappaport F, de Vitry C, Vallon O, et al (2014) Nitric oxide-triggered remodeling of chloroplast bioenergetics and thylakoid proteins upon nitrogen starvation in Chlamydomonas reinhardtii. Plant Cell 26: 353–372
-
(2014)
Plant Cell
, vol.26
, pp. 353-372
-
-
Wei, L.1
Derrien, B.2
Gautier, A.3
Houille-Vernes, L.4
Boulouis, A.5
Saint-Marcoux, D.6
Malnoë, A.7
Rappaport, F.8
De Vitry, C.9
Vallon, O.10
-
85
-
-
0034810970
-
TCA1, a single nuclear-encoded translational activator specific for petA mRNA in Chlamydomonas reinhardtii chloroplast
-
Wostrikoff K, Choquet Y, Wollman FA, Girard-Bascou J (2001) TCA1, a single nuclear-encoded translational activator specific for petA mRNA in Chlamydomonas reinhardtii chloroplast. Genetics 159: 119–132
-
(2001)
Genetics
, vol.159
, pp. 119-132
-
-
Wostrikoff, K.1
Choquet, Y.2
Wollman, F.A.3
Girard-Bascou, J.4
-
86
-
-
3342964218
-
Biogenesis of PSI involves a cascade of translational autoregulation in the chloroplast of Chlamydomonas
-
Wostrikoff K, Girard-Bascou J, Wollman FA, Choquet Y (2004) Biogenesis of PSI involves a cascade of translational autoregulation in the chloroplast of Chlamydomonas. EMBO J 23: 2696–2705
-
(2004)
EMBO J
, vol.23
, pp. 2696-2705
-
-
Wostrikoff, K.1
Girard-Bascou, J.2
Wollman, F.A.3
Choquet, Y.4
-
87
-
-
84926138177
-
Cytosine deaminase as a negative selectable marker for the microalgal chloroplast: A strategy for the isolation of nuclear mutations that affect chloroplast gene expression
-
Young RE, Purton S (2014) Cytosine deaminase as a negative selectable marker for the microalgal chloroplast: a strategy for the isolation of nuclear mutations that affect chloroplast gene expression. Plant J 80: 915–925
-
(2014)
Plant J
, vol.80
, pp. 915-925
-
-
Young, R.E.1
Purton, S.2
-
88
-
-
0028369220
-
Gene isolation through genomic complementation using an indexed library of Chlamydomonas reinhardtii DNA
-
Zhang H, Herman PL, Weeks DP (1994) Gene isolation through genomic complementation using an indexed library of Chlamydomonas reinhardtii DNA. Plant Mol Biol 24: 663–672
-
(1994)
Plant Mol Biol
, vol.24
, pp. 663-672
-
-
Zhang, H.1
Herman, P.L.2
Weeks, D.P.3
|