In vitro flowering associated protein changes in Dendrocalamus hamiltonii

Proteomics

Volumn 15, Issue 7, 2015, Pages 1291-1306

  Kaur, Devinder ^a   Dogra, Vivek ^a   Thapa, Pooja ^a   Bhattacharya, Amita ^a   Sood, Anil ^a   Sreenivasulu, Yelam ^a  

^a CSIR INSTITUTE OF HIMALAYAN BIORESOURCE TECHNOLOGY   (India)

Author keywords

Bamboos; Ethylene biosynthesis; Floral transition; Phytohormones; Plant proteomics

Indexed keywords

AMINOCYCLOPROPANE 1 CARBOXYLATE SYNTHASE; GIBBERELLIC ACID; MATURASE K; PHYTOCHROME; PHYTOHORMONE; PROTEIN; PROTEIN LWD1; PROTEIN MADS BOX; S ADENOSYLMETHIONINE; S ADENOSYLMETHIONINE SYNTHASE; SCARECROW LIKE PROTEIN 21; TRANSCRIPTION FACTOR; UNCLASSIFIED DRUG; ZINC FINGER PROTEIN; PROTEOME; VEGETABLE PROTEIN;

ANGIOSPERM; ARTICLE; CALCIUM SIGNALING; CONTROLLED STUDY; DENDROCALAMUS HAMILTONII; FLOWERING; IN VITRO STUDY; MASS SPECTROMETRY; MERISTEM; METABOLISM; NONHUMAN; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN EXPRESSION; PROTEIN SYNTHESIS; SIGNAL TRANSDUCTION; VEGETATIVE GROWTH; BAMBUSA; FLOWER; GENE EXPRESSION; GENE EXPRESSION REGULATION; GENETICS; GROWTH, DEVELOPMENT AND AGING; MOLECULAR GENETICS; TANDEM MASS SPECTROMETRY;

BAMBUSA; DENDROCALAMUS HAMILTONII;

BAMBUSA; FLOWERS; GENE EXPRESSION; GENE EXPRESSION REGULATION, PLANT; MOLECULAR SEQUENCE ANNOTATION; PLANT PROTEINS; PROTEOME; TANDEM MASS SPECTROMETRY;

EID: 84926127223     PISSN: 16159853     EISSN: 16159861     Source Type: Journal    
DOI: 10.1002/pmic.201400049     Document Type: Article

References (73)

1. Adrian, J., Torti, S., Turck, F., From decision to commitment: the molecular memory of flowering. Mol. Plant 2009, 2, 628-642.
2. Wang, Y., Li, L., Ye, T., Lu, Y. et al., The inhibitory effect of ABA on floral transition is mediated by ABI5 in Arabidopsis. J. Exp. Bot. 2013, 64, 675-684.
3. Yant, L., Mathieu, J., Dinh, T. T., Ott, F. et al., Orchestration of the floral transition and floral development in Arabidopsis by the bi-functional transcription factor APETALA2. Plant Cell 2010, 22, 2156-2170.
4. Zhang, D., Ren, L., Yue, J., Wang, L. et al., A comprehensive analysis of flowering transition in Agapanthus praecox ssp. orientalis (Leighton) Leighton by using transcriptomic and proteomic techniques. J. Proteomics 2013, 80, 1-25.
5. Kumar, S. V., Lucyshyn, D., Jaeger, K. E., Alo, E. et al., Transcription factor PIF4 controls the thermo sensory activation of flowering. Nature 2012, 484, 242-245.
6. Koshy, C. K., Bambusa vulgaris blooms: a leap towards extinction? Curr. Sci. 1997, 72, 622-624.
7. Ramanayake, S. M. S. D., Flowering in bamboo: an enigma! Cey. J. Sci. (Bio. Sci.) 2006, 35, 95-105.
8. Peng, Z., Lu, Y., Li, L., Zhao, Q. et al., The draft genome of the fast-growing non-timber forest species moso bamboo (Phyllostachys heterocycla), Nat. Genet. 2013, 45, 456-460.
9. Tomar, J. M. S., Hore, D. K., Annadurai, A., Bamboo and their conservation in North-East India. Indian For. 2009, 135, 817-824.
10. Murashige, T., Skoog, F., A revised medium for rapid growth and bioassays with tobacco tissue cultures. Physiol. Plantarum 1962, 15, 473-497.
11. Wang, W., Vignani, R., Scali, M., Cresti, M., A universal and rapid protocol for protein extraction from recalcitrant plant tissues for proteomic analysis. Electrophoresis 2006, 27, 2782-2786.
12. Bradford, M. M., A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. Anal. Biochem. 1976, 72, 248-254.
13. Dogra, V., Ahuja, P. S., Sreenivasulu, Y., Change in protein content during seed germination of a high altitude plant Podophyllum hexandrum Royle. J. Proteomics 2013, 78, 26-38.
14. Laemmli, U. K., Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature 1970, 227, 680-684.
15. Bollag, D. M., Edelstein, S. J., Protein Methods. John Wiley and Sons Inc, New York 1991.
16. Gill, T., Dogra, V., Kumar, S., Ahuja, P. S. et al., Protein dynamics during seed germination under copper stress in Arabidopsis over-expressing Potentilla superoxide dismutase. J. Plant Res. 2012, 125, 165-72.
17. Duncan, D. B., Multiple range and multiple F test. Biometrics 1955, 11, 1-42.
18. Coneva, V., Guevara, D., Rothstein, S. J., Colasanti, J., Transcript and metabolite signature of maize source leaves suggests a link between transitory starch to sucrose balance and the autonomous floral transition. J. Exp. Bot. 2012, 63, 5079-5092.
19. Posé, D., Yant, L., Schmid, M., The end of innocence: flowering networks explode in complexity. Curr. Opin. Plant Biol. 2012, 15, 45-50.
20. Jaya, E. S. K. D., Morphological, physiological, and molecular studies on the effect of shoot architecture on phase change and floral transition in Eucalyptus occidentalis and Metrosideros excels. Ph.D. Thesis. 2007, Massey University, Palmerston North, New Zealand.
21. Suh, S. S., Choi, K. R., Lee, I., Revisiting phase transition during flowering in Arabidopsis. Plant Cell Physiol. 2003, 44, 836-843.
22. van Noorden, G. E., Kerim, T., Goffard, N., Wiblin, R. et al., Overlap of proteome changes in Medicago truncatula in response to auxin and Sinorhizobium meliloti. Plant Physiol. 2007, 144, 1115-1131.
23. Schenkluhn, L., Hohnjec, N., Niehaus, K., Schmitz, U. et al., Differential gel electrophoresis (DIGE) to quantitatively monitor early symbiosis- and pathogenesis-induced changes of the Medicago truncatula root proteome. J. Proteomics, 2010, 73, 753-768.
24. Stone, K. L., Williams, K. R., Reverse-phase HPLC separation of enzymatic digests of proteins, in: Walker, J. M. (Eds.), The Protein Protocols Handbook, 3rd edition, Humana press, Hatfield, UK 2009, pp. 937-946.
25. Abdallah, C., Dumas-Gaudot, E., Renaut, J., Sergeant, K. Gel-based and gel-free quantitative proteomics approaches at a glance. Int. J. Plant Genomics 2012, 494572.
26. Malcevschi, A., Marmiroli, N. Plant protein analysis. in: Heazlewood, J. (Ed.), Proteomic Applications in Biology, InTech, New York 2012, pp. 117-140, New York.
27. Careri, M., Bianchi, F., Corradini, C. Recent advances in the application of mass spectrometry in food-related analysis. J. Chromatogr. A. 2002, 970, 3-64.
28. Tuli, L., Ressom, H. W., LC-MS based detection of differential protein expression. J. Proteomics Bioinform. 2009, 2, 416-438.
29. Thomos, R. Recent developments in LC-MS-MS for the identification and measurement of nanoscale amounts of proteins and peptides. Spectroscopy, 2001, 16, 28-37.
30. Patterson, S. D., Thomas, D., Bradshaw, R. A., Application of combined mass spectrometry and partial amino acid sequence to the identification of gel-separated proteins. Electrophoresis 1996, 17, 877-891.
31. Rasmussen, H. H., Mortz, E., Mann, M., Roepstorff, P. et al., Identification of transformation sensitive proteins recorded in human two-dimensional gel protein databases by mass spectrometric peptide mapping alone and in combination with microsequencing. Electrophoresis 1994, 15, 406-416.
32. Muhlemann, J. K., Maeda, H., Chang, C. Y., San-Miguel, P. et al., Developmental changes in the metabolic network of snapdragon flowers. PLoS One 2012, 7, e40381.
33. Eveland, A. L., Jackson, D. P., Sugars, signalling, and plant development. J. Exp. Bot. 2012, 63, 3367-3377.
34. Sachs, R. M., Hackett, W. P., Chemical control of flowering. Acta. Hortic. 1977, 1, 29-49.
35. Lindahl, M., Spetea, C., Hundal, T., Oppenheim, A. B. et al., The thylakoid FtsH protease plays a role in the light-induced turnover of the photosystem II D1 protein. Plant Cell 2000, 12, 419-431.
36. Li, W., Han, Y., Tao, F., Chong, K., Knockdown of SAMS genes encoding S-adenosyl-l-methionine synthetases causes methylation alterations of DNAs and histones and leads to late flowering in rice. J. Plant Physiol. 2011, 168, 1837-1843.
37. Achard, P., Baghour, M., Chapple, A., Hedden, P. et al., The plant stress hormone ethylene controls floral transition via DELLA-dependent regulation of floral meristem-identity genes. Proc. Natl. Acad. Sci. U. S. A. 2007, 104, 6484-6489.
38. Kolosova, N., Sherman, D., Karlson, D., Dudareva, N., Cellular and subcellular localization of S-adenosyl-l-methionine:benzoic acid carboxyl methyltransferase, the enzyme responsible for biosynthesis of the volatile ester methylbenzoate in snapdragon flowers. Plant Physiol. 2001, 126, 956-964.
39. Lynch, D. V., Dunn, T. M., An introduction to plant sphingolipids. New Phytol. 2004, 161, 677-702.
40. Teng, C., Dong, H., Shi, L., Deng, Y. et al., Serine palmitoyltransferase, a key enzyme for de novo synthesis of sphingolipids, is essential for male gametophyte development in Arabidopsis. Plant Physiol. 2008, 146, 1322-1332.
41. Vick, B. A., Zimmerman, D. C., Characterization of 12-oxo-phytodienoic acid reductase in corn. Plant Physiol. 1986, 80, 202-205.
42. Vlachonasios, K. E., Thomashow, M. F., Triezenberg, S. J., Disruption mutations of ADA2b and GCN5 transcriptional adaptor genes dramatically affect Arabidopsis growth, development, and gene expression. Plant Cell 2003, 15, 626-638.
43. Day, R. B., Shibuya, N., Minami, E., Identification and characterization of two new members of the GRAS gene family in rice responsive to N-acetylchitooligosaccharide elicitor. Biochim. Biophys. Acta. 2003, 1625, 261-268.
44. Falcone-Ferreyra, M.L., Casadevall, R., Luciani, M. D., Pezza, A. et al., New evidences for differential roles of L10 ribosomal proteins from Arabidopsis thaliana. Plant Physiol. 2013, 163, 78-391.
45. Simpson, G. G., Gendall, T., Dean, C., When to switch to flowering. Annu. Rev. Cell Dev. Biol. 1999, 15, 519-550.
46. Kaur, D., Development of in vitro strategies for conservation of Dendrocalamus hamiltonii Nees et Arn. Ex Munro. Ph.D. Thesis. 2013, Guru Nanak Dev University, Amritsar, Punjab, India.
47. Sancar, A., Structure and function of DNA photolyase and cryptochrome blue-light photoreceptors. Chem. Rev. 2003, 103, 2203-2237.
48. Chaves, I., Pokorny, R., Byrdin, M., Hoang, N. et al., The cryptochromes: blue light photoreceptors in plants and animals. Annu. Rev. Plant Biol. 2011, 62, 335-364.
49. Burnell, J. N., Hatch, M. D., Regulation of C4 photosynthesis: identification of a catalytically important histidine residue and its role in the regulation of pyruvate, Pi dikinase. Arch. Biochem. Biophys. 1984, 231, 175-182.
50. Wu, J. F., Wang, Y., Wu, S. H., Two New Clock Proteins, LWD1 and LWD2, regulate Arabidopsis photoperiodic flowering. Plant Physiol. 2008, 148, 948-959.
51. Young, J. C., Moarefi, I., Hartl, F. U., Hsp90: a specialized but essential protein-folding tool. J. Cell Biol. 2001, 154, 267-73.
52. Terasawa, K., Minami, M., Minam Y., Constantly updated knowledge of Hsp90. J. Biochem. 2005, 137, 443-47.
53. Sangster, T. A., Bahrami, A., Wilczek, A., Watanabe, E. et al., Phenotypic diversity and altered environmental plasticity in Arabidopsis thaliana with reduced Hsp90 levels. PLoS One 2007, 2, e648.
54. Jaworski, K., Pawelek, A., Kopcewicz, J., Szmidt-Jaworska, A., The calcium-dependent protein kinase (PnCDPK1) is involved in Pharbitis nil flowering. J. Plant Physiol. 2012, 169, 1578-1585.
55. Frietsch, S., Wang, Y. F., Sladek, C., Poulsen, L. R. et al., A cyclic nucleotide-gated channel is essential for polarized tip growth of pollen. Proc. Natl. Acad. Sci. USA 2007, 104, 14531-14536.
56. Khvochev, M. V., Ren, M., Takamori, S., Jahn, R. et al., Divergent functions of neuronal Rab11b in Ca2+ regulated versus constitutive exocytosis. J. Neurosci. 2003, 23, 10531-10539.
57. Davis, S. J., Integrating hormones into the floral-transition pathway of Arabidopsis thaliana. Plant Cell Environ. 2009, 32, 1201-1210.
58. Georges, F., Das, S., Ray, H., Bock, C. et al., Over-expression of Brassica napus phosphatidylinositolphospholipase C2 in canola induces significant changes in gene expression and phytohormone distribution patterns, enhances drought tolerance and promotes early flowering and maturation. Plant Cell Environ. 2009, 32, 1664-1681.
59. Okada, K., Saito, T., Nakagawa, T., Kawamukai, M. et al., Five geranylgeranyl diphosphate synthases expressed in different organs are localized into three subcellular compartments in Arabidopsis. Plant Physiol. 2000, 122, 1045-1056.
60. Zhang, Y. J., Xie, Z. K., Wang, Y. J., An LP: changes in carbohydrate metabolism and bulb growth as induced by low-temperature release of dormancy in lily bulbs. Philipp. Agric. Sci. 2011, 94, 149-150.
61. Aukerman, M. J., Sakai, H., Regulation of flowering time and floral organ identity by a microRNA and its APETALA2-like target genes. Plant Cell 2003, 15, 2730-2741.
62. Reyes, D., Rodríguez, D., González-García, M. P., Lorenzo, O. et al., Overexpression of a Protein Phosphatase 2C from Beech Seeds in Arabidopsis shows phenotypes related to abscisic acid responses and gibberellin biosynthesis. Plant Physiol. 2006, 141, 1414-1424.
63. Ouellet, F., Overvoorde, P.J., Theologis, A., IAA17/AXR3: biochemical insight into an auxin mutant phenotype. Plant Cell 2001, 13, 829-842.
64. Raab, S., Drechsel, G., Zarepour, M., Hartung, W. et al., Identification of a novel E3 ubiquitin ligase that is required for suppression of premature senescence in Arabidopsis. Plant J. 2009, 59, 39-51.
65. Duan, K., Yi, K., Dang, L., Huang, H. et al., Characterization of a sub-family of Arabidopsis genes with the SPX domain reveals their diverse functions in plant tolerance to phosphorus starvation. Plant J. 2008, 54, 965-975.
66. Nelson, D. C., Lasswell, J., Rogg, L. E., Cohen, M. A. et al., FKF1, a clock-controlled gene that regulates the transition to flowering in Arabidopsis. Cell 2000, 101, 331-340.
67. Peng, Z., Zhang, C., Zhang, Y., Hu, T. et al., Transcriptome sequencing and analysis of the fast growing shoots of moso bamboo (Phyllostachys edulis). PloS One 2013, 8, e78944.
68. Liu M. Y, Qiao G. R, Jiang J, Yang H. et al. Transcriptome sequencing and de novo analysis for ma bamboo (Dendrocalamus latiflorus Munro) using the Illumina platform. PLoS One 2012, 10, e46766, 1-11.
69. Lin, X. C., Chow, T. Y., Chen, H. H., Liu, C. C. et al., Understanding bamboo flowering based on large-scale analysis of expressed sequence tags. Genet. Mol. Res. 2010, 9, 1085-1093.
70. Peng, X., Zhao, Y., Cao, J., Zhang, W. et al., CCCH-type zinc finger family in maize: genome-wide identification, classification and expression profiling under abscisic acid and drought treatments. PLoS One 2012, 7, e40120.
71. Kojima, H., Suzuki, T., Kato, T., Enomoto, K. et al., Sugar-inducible expression of the nucleolin-1 gene of Arabidopsis thaliana and its role in ribosome synthesis, growth and development. Plant J. 2007, 49, 1053-1063.
72. Thorstensen, T., Grini, P. E., Mercy, I. S., Alm, V. et al., The Arabidopsis SET-domain protein ASHR3 is involved in stamen development and interacts with the bHLH transcription factor ABORTED MICROSPORES (AMS). Plant Mol. Biol. 2008, 66, 47-59.
73. Bao, X., Shorrosh, B. S., Ohlrogge, J. B., Isolation and characterization of an Arabidopsis biotin carboxylase gene and its promoter. Plant Mol. Biol. 1997, 35, 539-550.