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Volumn 6, Issue 1, 2015, Pages 212-216

Differential impact of the monovalent ions Li+, Na+, K+, and Rb+ on DNA conformational properties

Author keywords

[No Author keywords available]

Indexed keywords

IONS; LITHIUM COMPOUNDS; NUCLEIC ACIDS; POTASSIUM COMPOUNDS; RUBIDIUM COMPOUNDS; SODIUM CHLORIDE; X RAY SCATTERING;

EID: 84925936083     PISSN: None     EISSN: 19487185     Source Type: Journal    
DOI: 10.1021/jz5024543     Document Type: Article
Times cited : (51)

References (18)
  • 3
    • 11144354105 scopus 로고    scopus 로고
    • X-ray and NMR studies of the DNA Oligomer d (ATATAT): Hoogsteen base pairing in duplex DNA
    • Abrescia, N. G. A.; Gonzalez, C.; Gouyette, C.; Subirana, J. A. X-ray and NMR Studies of the DNA Oligomer d (ATATAT): Hoogsteen Base Pairing in Duplex DNA. Biochemistry 2004, 43, 4092-4100.
    • (2004) Biochemistry , vol.43 , pp. 4092-4100
    • Abrescia, N.G.A.1    Gonzalez, C.2    Gouyette, C.3    Subirana, J.A.4
  • 4
    • 0034794444 scopus 로고    scopus 로고
    • Improving the accuracy of NMR structures of DNA by means of a database potential of mean force describing base-base positional interactions
    • Kuszewski, J.; Schwieters, C.; Clore, G. M. Improving the Accuracy of NMR Structures of DNA by Means of a Database Potential of Mean Force Describing Base-Base Positional Interactions. J. Am. Chem. Soc. 2001, 123, 3903-3918.
    • (2001) J. Am. Chem. Soc. , vol.123 , pp. 3903-3918
    • Kuszewski, J.1    Schwieters, C.2    Clore, G.M.3
  • 5
    • 11844289660 scopus 로고    scopus 로고
    • Resolving conflicting crystallographic and NMR models for solution-state DNA with solution X-ray diffraction
    • Zuo, X. B.; Tiede, D. M. Resolving Conflicting Crystallographic and NMR Models for Solution-State DNA with Solution X-ray Diffraction. J. Am. Chem. Soc. 2005, 127, 16-7.
    • (2005) J. Am. Chem. Soc. , vol.127 , pp. 16-17
    • Zuo, X.B.1    Tiede, D.M.2
  • 6
    • 33644861376 scopus 로고    scopus 로고
    • X-ray diffraction "fingerprinting" of DNA structure in solution for quantitative evaluation of molecular dynamics simulation
    • Zuo, X. B.; Cui, G. L.; Merz, K. M.; Zhang, L. G.; Lewis, F. D.; Tiede, D. M. X-ray Diffraction "Fingerprinting" of DNA Structure in Solution for Quantitative Evaluation of Molecular Dynamics Simulation. Proc. Natl. Acad. Sci. U. S. A. 2006, 103, 3534-3539.
    • (2006) Proc. Natl. Acad. Sci. U. S. A. , vol.103 , pp. 3534-3539
    • Zuo, X.B.1    Cui, G.L.2    Merz, K.M.3    Zhang, L.G.4    Lewis, F.D.5    Tiede, D.M.6
  • 7
    • 49449086650 scopus 로고    scopus 로고
    • Hierarchical organization of eglin c native state dynamics is shaped by competing direct and water-mediated interactions
    • Materese, C. K.; Goldmon, C. C.; Papoian, G. A. Hierarchical Organization of Eglin C Native State Dynamics is Shaped by Competing Direct and Water-Mediated Interactions. Proc. Natl. Acad. Sci. U. S. A. 2008, 105, 10659-10664.
    • (2008) Proc. Natl. Acad. Sci. U. S. A. , vol.105 , pp. 10659-10664
    • Materese, C.K.1    Goldmon, C.C.2    Papoian, G.A.3
  • 8
    • 84900474707 scopus 로고    scopus 로고
    • All-atom polarizable force field for DNA based on the classical drude oscillator model
    • Savelyev, A.; MacKerell, A. D., Jr. All-Atom Polarizable Force Field for DNA Based on the Classical Drude Oscillator Model. J. Comput. Chem. 2014, 35, 1219-1239.
    • (2014) J. Comput. Chem. , vol.35 , pp. 1219-1239
    • Savelyev, A.1    MacKerell, A.D.2
  • 9
    • 84902951608 scopus 로고    scopus 로고
    • Balancing the interactions of ions, water, and DNA in the drude polarizable force field
    • Savelyev, A.; MacKerell, A. D., Jr. Balancing the Interactions of Ions, Water, and DNA in the Drude Polarizable Force Field. J. Phys. Chem. B 2014, 118, 6742-6757.
    • (2014) J. Phys. Chem. B , vol.118 , pp. 6742-6757
    • Savelyev, A.1    MacKerell, A.D.2
  • 10
    • 84855661433 scopus 로고    scopus 로고
    • Optimization of the CHARMM additive force field for DNA: Improved treatment of the BI/BII conformational equilibrium
    • Hart, K.; Foloppe, N.; Baker, C. M.; Denning, E. J.; Nilsson, L.; MacKerell, A. D., Jr. Optimization of the CHARMM Additive Force Field for DNA: Improved Treatment of the BI/BII Conformational Equilibrium. J. Chem. Theory Comput. 2012, 8, 348-362.
    • (2012) J. Chem. Theory Comput. , vol.8 , pp. 348-362
    • Hart, K.1    Foloppe, N.2    Baker, C.M.3    Denning, E.J.4    Nilsson, L.5    MacKerell, A.D.6
  • 11
    • 34250318638 scopus 로고    scopus 로고
    • Refinement of the AMBER force field for nucleic acids: Improving the description of alpha/gamma conformers
    • Pérez, A.; Marchán, I.; Svozil, D.; Sponer, J.; Cheatham, T. E., III; Laughton, C. A.; Orozco, M. Refinement of the AMBER Force Field for Nucleic Acids: Improving the Description of alpha/gamma Conformers. Biophys. J. 2007, 92, 3817-3829.
    • (2007) Biophys. J. , vol.92 , pp. 3817-3829
    • Pérez, A.1    Marchán, I.2    Svozil, D.3    Sponer, J.4    Cheatham, T.E.5    Laughton, C.A.6    Orozco, M.7
  • 12
    • 22244443016 scopus 로고    scopus 로고
    • Na+ shows a markedly higher potential than K+ in DNA compaction in a crowded environment
    • Zinchenko, A. A.; Yoshikawa, K. Na+ Shows a Markedly Higher Potential than K+ in DNA Compaction in a Crowded Environment. Biophys. J. 2005, 88, 4118-4123.
    • (2005) Biophys. J. , vol.88 , pp. 4118-4123
    • Zinchenko, A.A.1    Yoshikawa, K.2
  • 16
    • 0034635961 scopus 로고    scopus 로고
    • The holliday junction in an inverted repeat DNA sequence: Sequence effects on the structure of four-way junctions
    • Eichman, B. F.; Vargason, J. M.; Mooers, B. H. M.; Ho, P. S. The Holliday Junction in an Inverted Repeat DNA Sequence: Sequence Effects on the Structure of Four-Way Junctions. Proc. Natl. Acad. Sci. U. S. A. 2000, 97, 3971-3976.
    • (2000) Proc. Natl. Acad. Sci. U. S. A. , vol.97 , pp. 3971-3976
    • Eichman, B.F.1    Vargason, J.M.2    Mooers, B.H.M.3    Ho, P.S.4
  • 18
    • 84903158830 scopus 로고    scopus 로고
    • Induced polarization influences the fundamental forces in DNA base flipping
    • Lemkul, J. A.; Savelyev, A.; MacKerell, A. D., Jr. Induced Polarization Influences the Fundamental Forces in DNA Base Flipping. J. Phys. Chem. Lett. 2014, 5, 2077-2083.
    • (2014) J. Phys. Chem. Lett. , vol.5 , pp. 2077-2083
    • Lemkul, J.A.1    Savelyev, A.2    MacKerell, A.D.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.