-
2
-
-
61449156563
-
Targeting proteins for destruction by the ubiquitin system: Implications for human pathobiology
-
Schwartz AL, Ciechanover A (2009) Targeting proteins for destruction by the ubiquitin system: implications for human pathobiology. Annu Rev Pharmacol Toxicol 49:73-96
-
(2009)
Annu Rev Pharmacol Toxicol
, vol.49
, pp. 73-96
-
-
Schwartz, A.L.1
Ciechanover, A.2
-
3
-
-
0041706156
-
A proteomics approach to understanding protein ubiquitination
-
Peng J, Schwartz D, Elias JE et al (2003) A proteomics approach to understanding protein ubiquitination. Nat Biotechnol 21:921-926
-
(2003)
Nat Biotechnol
, vol.21
, pp. 921-926
-
-
Peng, J.1
Schwartz, D.2
Elias, J.E.3
-
4
-
-
82455179484
-
Systematic and quantitative assessment of the ubiquitin-modifi ed proteome
-
Kim W, Bennett EJ, Huttlin EL et al (2011) Systematic and quantitative assessment of the ubiquitin-modifi ed proteome. Mol Cell 44:325-340
-
(2011)
Mol Cell
, vol.44
, pp. 325-340
-
-
Kim, W.1
Bennett, E.J.2
Huttlin, E.L.3
-
5
-
-
84867103151
-
Proteomic analyses reveal divergent ubiquitylation site patterns in murine tissues
-
Wagner SA, Beli P, Weinert BT et al (2012) Proteomic analyses reveal divergent ubiquitylation site patterns in murine tissues. Mol Cell Proteomics 11:1578-1585
-
(2012)
Mol Cell Proteomics
, vol.11
, pp. 1578-1585
-
-
Wagner, S.A.1
Beli, P.2
Weinert, B.T.3
-
6
-
-
84864222562
-
Atypical ubiquitylation-The unexplored world of polyubiquitin beyond Lys48 and Lys63 linkages
-
Kulathu Y, Komander D (2012) Atypical ubiquitylation-the unexplored world of polyubiquitin beyond Lys48 and Lys63 linkages. Nat Rev Mol Cell Biol 13:508-523
-
(2012)
Nat Rev Mol Cell Biol
, vol.13
, pp. 508-523
-
-
Kulathu, Y.1
Komander, D.2
-
7
-
-
55949136614
-
Quantitative analysis of global ubiquitination in HeLa cells by mass spectrometry
-
Meierhofer D, Wang X, Huang L et al (2008) Quantitative analysis of global ubiquitination in HeLa cells by mass spectrometry. J Proteome Res 7:4566-4576
-
(2008)
J Proteome Res
, vol.7
, pp. 4566-4576
-
-
Meierhofer, D.1
Wang, X.2
Huang, L.3
-
8
-
-
23144452492
-
Weighing in on ubiquitin: The expanding role of mass-spectrometry-based proteomics
-
Kirkpatrick DS, Denison C, Gygi SP (2005) Weighing in on ubiquitin: the expanding role of mass-spectrometry-based proteomics. Nat Cell Biol 7:750-757
-
(2005)
Nat Cell Biol
, vol.7
, pp. 750-757
-
-
Kirkpatrick, D.S.1
Denison, C.2
Gygi, S.P.3
-
9
-
-
33845441117
-
Dissecting the ubiquitin pathway by mass spectrometry
-
Xu P, Peng J (2006) Dissecting the ubiquitin pathway by mass spectrometry. Biochim Biophys Acta 1764:1940-1947
-
(2006)
Biochim Biophys Acta
, vol.1764
, pp. 1940-1947
-
-
Xu, P.1
Peng, J.2
-
10
-
-
79955780605
-
A novel strategy to isolate ubiquitin conjugates reveals wide role for ubiquitination during neural development
-
Franco M, Seyfried NT, Brand AH et al (2011) A novel strategy to isolate ubiquitin conjugates reveals wide role for ubiquitination during neural development. Mol Cell Proteomics 10(M110):002188
-
(2011)
Mol Cell Proteomics
, vol.10 M
, Issue.110
, pp. 2188
-
-
Franco, M.1
Seyfried, N.T.2
Brand, A.H.3
-
11
-
-
84867070591
-
Quantitative proteomics to decipher ubiquitin signaling
-
Chen PC, Na CH, Peng J (2012) Quantitative proteomics to decipher ubiquitin signaling. Amino Acids 43:1049-1060
-
(2012)
Amino Acids
, vol.43
, pp. 1049-1060
-
-
Chen, P.C.1
Na, C.H.2
Peng, J.3
-
12
-
-
84870724100
-
Characterizing ubiquitination sites by peptidebased immunoaffi nity enrichment
-
Bustos D, Bakalarski CE, Yang Y et al (2012) Characterizing ubiquitination sites by peptidebased immunoaffi nity enrichment. Mol Cell Proteomics 11:1529-1540
-
(2012)
Mol Cell Proteomics
, vol.11
, pp. 1529-1540
-
-
Bustos, D.1
Bakalarski, C.E.2
Yang, Y.3
-
13
-
-
78651225388
-
Global analysis of lysine ubiquitination by ubiquitin remnant immunoaffi nity profi ling
-
Xu G, Paige JS, Jaffrey SR (2010) Global analysis of lysine ubiquitination by ubiquitin remnant immunoaffi nity profi ling. Nat Biotechnol 28:868-873
-
(2010)
Nat Biotechnol
, vol.28
, pp. 868-873
-
-
Xu, G.1
Paige, J.S.2
Jaffrey, S.R.3
-
14
-
-
82355164206
-
Ubiquitin ligase substrate identifi cation through quantitative proteomics at both the protein and peptide levels
-
Lee KA, Hammerle LP, Andrews PS et al (2011) Ubiquitin ligase substrate identifi cation through quantitative proteomics at both the protein and peptide levels. J Biol Chem 286:41530-41538
-
(2011)
J Biol Chem
, vol.286
, pp. 41530-41538
-
-
Lee, K.A.1
Hammerle, L.P.2
Andrews, P.S.3
-
15
-
-
80054694510
-
Global identifi cation of modular cullin-RING ligase substrates
-
Emanuele MJ, Elia AE, Xu Q et al (2011) Global identifi cation of modular cullin-RING ligase substrates. Cell 147:459-474
-
(2011)
Cell
, vol.147
, pp. 459-474
-
-
Emanuele, M.J.1
Elia, A.E.2
Xu, Q.3
-
16
-
-
80054033461
-
A proteome-wide, quantitative survey of in vivo ubiquitylation sites reveals widespread regulatory roles
-
Wagner SA, Beli P, Weinert BT et al (2011) A proteome-wide, quantitative survey of in vivo ubiquitylation sites reveals widespread regulatory roles. Mol Cell Proteomics 10(M111): 013284
-
(2011)
Mol Cell Proteomics
, vol.10 M
, Issue.111
, pp. 013284
-
-
Wagner, S.A.1
Beli, P.2
Weinert, B.T.3
-
17
-
-
84861151032
-
Methods for quantifi cation of in vivo changes in protein ubiquitination following proteasome and deubiquitinase inhibition
-
Udeshi ND, Mani DR, Eisenhaure T et al (2012) Methods for quantifi cation of in vivo changes in protein ubiquitination following proteasome and deubiquitinase inhibition. Mol Cell Proteomics 11:148-159
-
(2012)
Mol Cell Proteomics
, vol.11
, pp. 148-159
-
-
Udeshi, N.D.1
Mani, D.R.2
Eisenhaure, T.3
-
18
-
-
84866108712
-
Synaptic protein ubiquitination in rat brain revealed by antibody-based ubiquitome analysis
-
Na CH, Jones DR, Yang Y et al (2012) Synaptic protein ubiquitination in rat brain revealed by antibody-based ubiquitome analysis. J Proteome Res 11:4722-4732
-
(2012)
J Proteome Res
, vol.11
, pp. 4722-4732
-
-
Na, C.H.1
Jones, D.R.2
Yang, Y.3
-
19
-
-
34247396011
-
A practical recipe for stable isotope labeling by amino acids in cell culture (SILAC
-
Ong SE, Mann M (2006) A practical recipe for stable isotope labeling by amino acids in cell culture (SILAC). Nat Protoc 1:2650-2660
-
(2006)
Nat Protoc
, vol.1
, pp. 2650-2660
-
-
Ong, S.E.1
Mann, M.2
-
20
-
-
63049125531
-
Quantitative proteomics reveals the function of unconventional ubiquitin chains in proteasomal degradation
-
Xu P, Duong DM, Seyfried NT et al (2009) Quantitative proteomics reveals the function of unconventional ubiquitin chains in proteasomal degradation. Cell 137:133-145
-
(2009)
Cell
, vol.137
, pp. 133-145
-
-
Xu, P.1
Duong, D.M.2
Seyfried, N.T.3
-
21
-
-
0000857494
-
An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database
-
Eng J, McCormack AL, Yates JR (1994) An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database. J Am Soc Mass Spectrom 5:976-989
-
(1994)
J Am Soc Mass Spectrom
, vol.5
, pp. 976-989
-
-
Eng, J.1
McCormack, A.L.2
Yates, J.R.3
-
22
-
-
68549127159
-
Systematical optimization of reverse-phase chromatography for shotgun proteomics
-
Xu P, Duong DM, Peng J (2009) Systematical optimization of reverse-phase chromatography for shotgun proteomics. J Proteome Res 8: 3944-3950
-
(2009)
J Proteome Res
, vol.8
, pp. 3944-3950
-
-
Xu, P.1
Duong, D.M.2
Peng, J.3
-
23
-
-
33847630405
-
Target-decoy search strategy for increased confi dence in large-scale protein identifi cations by mass spectrometry
-
Elias JE, Gygi SP (2007) Target-decoy search strategy for increased confi dence in large-scale protein identifi cations by mass spectrometry. Nat Methods 4:207-214
-
(2007)
Nat Methods
, vol.4
, pp. 207-214
-
-
Elias, J.E.1
Gygi, S.P.2
-
24
-
-
44949142293
-
Systematic approach for validating the ubiquitinated proteome
-
Seyfried NT, Xu P, Duong DM et al (2008) Systematic approach for validating the ubiquitinated proteome. Anal Chem 80: 4161-4169
-
(2008)
Anal Chem
, vol.80
, pp. 4161-4169
-
-
Seyfried, N.T.1
Xu, P.2
Duong, D.M.3
-
25
-
-
77950658888
-
Multiplex SILAC analysis of a cellular TDP-43 proteinopathy model reveals protein inclusions associated with SUMOylation and diverse polyubiquitin chains
-
Seyfried NT, Gozal YM, Dammer EB et al (2010) Multiplex SILAC analysis of a cellular TDP-43 proteinopathy model reveals protein inclusions associated with SUMOylation and diverse polyubiquitin chains. Mol Cell Proteomics 9:705-718
-
(2010)
Mol Cell Proteomics
, vol.9
, pp. 705-718
-
-
Seyfried, N.T.1
Gozal, Y.M.2
Dammer, E.B.3
-
26
-
-
80053363595
-
Stable-isotope labeling with amino acids in nematodes
-
Larance M, Bailly AP, Pourkarimi E et al (2011) Stable-isotope labeling with amino acids in nematodes. Nat Methods 8:849-851
-
(2011)
Nat Methods
, vol.8
, pp. 849-851
-
-
Larance, M.1
Bailly, A.P.2
Pourkarimi, E.3
-
27
-
-
77958018495
-
The SILAC fl y allows for accurate protein quantifi-cation in vivo
-
Sury MD, Chen JX, Selbach M (2010) The SILAC fl y allows for accurate protein quantifi-cation in vivo. Mol Cell Proteomics 9:2173-2183
-
(2010)
Mol Cell Proteomics
, vol.9
, pp. 2173-2183
-
-
Sury, M.D.1
Chen, J.X.2
Selbach, M.3
-
28
-
-
84866066300
-
Stable isotope labeling with amino acids in Drosophila for quantifying proteins and modifi cations
-
Xu P, Tan H, Duong DM et al (2012) Stable isotope labeling with amino acids in Drosophila for quantifying proteins and modifi cations. J Proteome Res 11:4403-4412
-
(2012)
J Proteome Res
, vol.11
, pp. 4403-4412
-
-
Xu, P.1
Tan, H.2
Duong, D.M.3
-
29
-
-
47549099572
-
SILAC mouse for quantitative proteomics uncovers kindlin-3 as an essential factor for red blood cell function
-
Kruger M, Moser M, Ussar S et al (2008) SILAC mouse for quantitative proteomics uncovers kindlin-3 as an essential factor for red blood cell function. Cell 134:353-364
-
(2008)
Cell
, vol.134
, pp. 353-364
-
-
Kruger, M.1
Moser, M.2
Ussar, S.3
-
30
-
-
44449108277
-
Iodoacetamide-induced artifact mimics ubiquitination in mass spectrometry
-
Nielsen ML, Vermeulen M, Bonaldi T et al (2008) Iodoacetamide-induced artifact mimics ubiquitination in mass spectrometry. Nat Methods 5:459-460
-
(2008)
Nat Methods
, vol.5
, pp. 459-460
-
-
Nielsen, M.L.1
Vermeulen, M.2
Bonaldi, T.3
|