Functional characterization of a strong bidirectional constitutive plant promoter isolated from cotton leaf curl Burewala virus

PLoS ONE

Volumn 10, Issue 3, 2015, Pages

  Khan, Zainul A ^a   Abdin, Malik Z ^b   Khan, Jawaid A ^a  

^a JAMIA MILLIA ISLAMIA CENTRAL UNIVERSITY   (India)

^b HAMDARD UNIVERSITY   (India)

Author keywords

[No Author keywords available]

Indexed keywords

BETA GLUCURONIDASE; COAT PROTEIN; DNA; DNA HELICASE; GREEN FLUORESCENT PROTEIN; VIRAL PROTEIN;

ARTICLE; BEGOMOVIRUS; CAULIFLOWER MOSAIC VIRUS; CONFOCAL LASER MICROSCOPY; CONTROLLED STUDY; COTTON LEAF CURL BUREWALA VIRUS; ENZYME ACTIVITY; FLUOROMETRY; GENE EXPRESSION; GENE FUNCTION; GENE ISOLATION; GOSSYPIUM HIRSUTUM; HISTOCHEMISTRY; NICOTIANA TABACUM; NONHUMAN; NUCLEOTIDE SEQUENCE; PLANT CELL; PLANT LEAF; PROMOTER REGION; PROTEIN ANALYSIS; REAL TIME POLYMERASE CHAIN REACTION; REPORTER GENE; TRANSGENE; VIRUS GENE; VIRUS GENOME; ECTOPIC EXPRESSION; GENETIC ENGINEERING; GENETIC TRANSCRIPTION; GENETIC TRANSFORMATION; GENETICS; GOSSYPIUM; MOLECULAR GENETICS; PLANT; PROCEDURES; SEQUENCE ANALYSIS; TOBACCO;

BEGOMOVIRUS; CAULIFLOWER MOSAIC VIRUS; GOSSYPIUM HIRSUTUM; NICOTIANA OBTUSIFOLIA; NICOTIANA TABACUM;

BASE SEQUENCE; BEGOMOVIRUS; ECTOPIC GENE EXPRESSION; GENETIC ENGINEERING; GOSSYPIUM; GREEN FLUORESCENT PROTEINS; MOLECULAR SEQUENCE DATA; PLANT LEAVES; PLANTS; PROMOTER REGIONS, GENETIC; SEQUENCE ANALYSIS; TOBACCO; TRANSCRIPTION, GENETIC; TRANSFORMATION, GENETIC; VIRAL PROTEINS;

EID: 84925708393     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0121656     Document Type: Article

References (68)

1. Stanley J, Bisaro DM, Briddon RW, Brown JK, Fauquet CM, Harrison BD, et al. Geminiviridae. In: Fauquet CM, Mayo MA, Maniloff J, Desselberger U, Ball LA, editors. Virus Taxonomy: Eighth Report of the International Committee on Taxonomy of Viruses. London: Elsevier Academic Press; 2005. pp. 301-326.
2. Fauquet CM, Briddon RW, Brown JK, Moriones E, Stanley J, Zerbini M, et al. Geminivirus strain demarcation and nomenclature. Arch Virol. 2008; 153: 783-821. doi: 10.1007/s00705-008-0037-6 PMID: 18256781
3. Varsani A, Navas-Castillo J, Moriones E, Hernández-Zepeda C, Idris A, Brown JK, et al. Establishment of three new genera in the family Geminiviridae: Becurtovirus, Eragrovirus and Turncurtovirus. Arch Virol. 2014; 159: 2193-2203. doi: 10.1007/s00705-014-2050-2 PMID: 24658781
4. Rojas MR, Hagen C, Lucas WJ, Gilbertson RL. Exploiting chinks in the plant's armor: evolution and emergence of geminiviruses. Annu Rev Phythopathol. 2005; 43: 361-394. PMID: 16078889
5. Briddon RW, Mansoor S, Bedford ID, Pinner MS, Saunders K, Stanley J, et al. Identification of DNA components required for induction of cotton leaf curl disease. Virolology. 2001; 285: 234-243. PMID: 11437658
6. Saunders K, Bedford ID, Yahara T, Stanley J. Aetiology: the earliest recorded plant virus disease. Nature. 2003; 422: 831. PMID: 12712190
7. Zhou X, Xie Y, Peng Y, Zhang Z. Malvastrum yellow vein virus, a new Begomovirus species associated with satellite DNA molecule. Chin Sci Bull. 2003; 48: 2206-2210.
8. Kumar A, Kumar J, Khan ZA, Yadav N, Sinha V, Bhatnagar D, et al. Study of betasatellite molecule from leaf curl disease of sunn hemp (Crotalaria juncea) in India. Virus Genes. 2010; 41: 432-440. doi: 10.1007/s11262-010-0531-2 PMID: 20890652
9. Mansoor S, Khan SH, Bashir A, Saeed M, Zafar Y, Malik KA, et al. Identification of a novel circular single-stranded DNA associated with cotton leaf curl disease in Pakistan. Virology. 1999; 259: 190-199. PMID: 10364503
10. Leke WN, Sattar MN, Ngane EB, Ngeve JM, Kvarnheden A, Brown JK. Molecular characterization of begomoviruses and DNA satellites associated with okra leaf curl disease in Cameroon. Virus Res. 2013; 174: 116-125. doi: 10.1016/j.virusres.2013.03.010 PMID: 23535770
11. Akhtar S, Khan AJ, Singh AS, Briddon RW. Identification of a disease complex involving a novel monopartite begomovirus with beta-and alphasatellites associated with okra leaf curl disease in Oman. Arch Virol. 2014; 159: 1199-1205. doi: 10.1007/s00705-013-1926-x PMID: 24287711
12. Hanley-Bowdoin L, Settlage SB, Orozco BM, Nagar S, Robertson D. Geminiviruses: models for plant DNA replication, transcription, and cell cycle regulation. Crit Rev Plant Sci. 1999; 18: 71-106.
13. Dinant S, Ripoll C, Pieper M, David C. Phloem specific expression driven by wheat dwarf geminivirus V-sense promoter in transgenic dicotyledonous species. Physiol Plant. 2004; 121: 108-116. PMID: 15086824
14. Sunitha S, Mahajan N, Veluthambi K. The TrAP/REn monodirectional promoter of Mungbean yellow mosaic geminivirus (MYMV) displays root-specific expression in transgenic tobacco. Plant Cell Tiss Organ Cult. 2012; 109: 535-545.
15. Ashraf MA, Shahid AA, Rao AQ, Bajwa KS, Husnain T. Functional characterization of a bidirectional plant promoter from cotton leaf curl Burewala virus using an Agrobacterium-mediated transient assay. Viruses. 2014; 6: 223-242. doi: 10.3390/v6010223 PMID: 24424501
16. Rasul F, Asad S, Zafar Y, Mansoor S. Characterization of a strong constitutive promoter from Cotton leaf curl Kokhran virus for high level gene expression in monocotyledonous and dicotyledonous plants. Int J Agric Biol. 2014; 16: 342-346.
17. Petty ITD, Coutts RHA, Buck KW. Transcriptional mapping of the coat protein gene of tomato golden mosaic virus. J Gen Virol. 1988; 69: 1359-1365.
18. Zhan XC, Haley A, Richardson K, Morris B. Analysis of the potential promoter sequences of African cassava mosaic virus by transient expression of the β-glucuronidase gene. J Gen Virol. 1991; 72: 2849-2852. PMID: 1940874
19. Xie Y, Liu Y, Meng M, Chen L, Zhu Z. Isolation and identification of a super strong plant promoter from cotton leaf curl Multan virus. Plant Mol Biol. 2003; 53: 1-14. PMID: 14756302
20. Argüello-Astorga GR, Guevara-Gonzalez RG, Herrera-Estrella LR, Rivera-Bustamante RF. Geminivirus replication origins have a group-specific organization of iterative elements: A model for replication. Virology. 1994; 203: 90-100. PMID: 8093156
21. Eagle PA, Hanley-Bowdoin L. cis elements that contribute to geminivirus transcriptional regulation and the efficiency of DNA replication. J Virol. 1997; 71: 6947-6955. PMID: 9261423
22. Fenoll C, Schwarz JJ, Black DM, Schneider M, Howell SH. The intergenic region of maize streak virus contains a GC-rich element that activates rightward transcription and binds maize nuclear factors. Plant Mol Biol. 1990; 15: 865-877. PMID: 2103478
23. Fontes EPB, Gladfelter HJ, Schaffer RL, Petty ITD, Hanley-Bowdoin L. Geminivirus replication origins have a modular organization. Plant Cell. 1994; 6: 405-416. PMID: 8180499
24. Amrao L, Amin I, Shahid MS, Briddon RW, Mansoor S. Cotton leaf curl disease in resistant cotton is associated with a single begomovirus that lacks an intact transcriptional activator protein. Virus Res. 2010; 152: 153-163. doi: 10.1016/j.virusres.2010.06.019 PMID: 20600387
25. Ashraf MA, Shahid AA, Mohamed BB, Dahab AA, Bajwa KS, Rao AQ, et al. Molecular characterization and phylogenetic analysis of a variant of highly infectious cotton leaf curl Burewala virus associated with CLCuD from Pakistan. Aust J Crop Sci. 2013; 7: 1113-1122.
26. Shuja MN, Briddon RW, Tahir M. Identification of a distinct strain of cotton leaf curl Burewala virus. Arch Virol. 2014; 159: 2787-2790. doi: 10.1007/s00705-014-2097-0 PMID: 24838851
27. Mullineaux PM, Rigden JE, Dry IB, Krake LR, Rezaian MA. Mapping of the polycistronic RNAs of tomato leaf curl geminivirus. Virology. 1993; 193: 414-423. PMID: 8438578
28. Sunter G, Hartitz MD, Bisaro DM. Tomato golden mosaic virus leftward gene expression: Autoregulation of geminivirus replication protein. Virology. 1993; 195: 275-280. PMID: 8317105
29. Dry I, Krake L, Mullineaux P, Rezaian A. Regulation of tomato leaf curl viral gene expression in host tissues. Mol Plant Microbe Interact. 2000; 13: 529-537. PMID: 10796019
30. Kumar A, Kumar J, Khan JA. Sequence characterization of cotton leaf curl virus from Rajasthan: phylogenetic relationship with other members of geminiviruses and detection of recombination. Virus Genes. 2010; 40: 282-289. doi: 10.1007/s11262-009-0439-x PMID: 20043195
31. Lescot M, Déhais P, Thijs G, Marchal K, Moreau Y, Van de Peer Y, et al. PlantCARE, a database of plant cis-acting regulatory elements and a portal to tools for in silico analysis of promoter sequences. Nucleic Acids Res. 2002; 30: 325-327. PMID: 11752327
32. Frith MC, Hansen U, Weng Z. Detection of cis-element clusters in higher eukaryotic DNA. Bioinformatics. 2001; 17: 878-889. PMID: 11673232
33. Higo K, Ugawa Y, Iwamoto M, Korenaga T. Plant cis-acting regulatory DNA elements (PLACE) database: 1999. Nucleic Acids Res. 1999; 27: 297-300. PMID: 9847208
34. Chang WC, Lee TY, Huang HD, Huang HY, Pan RL. PlantPAN: Plant Promoter Analysis Navigator, for identifying combinatorial cis-regulatory elements with distance constraint in plant gene group. BMC Genomics. 2008; 9: 561. doi: 10.1186/1471-2164-9-561 PMID: 19036138
35. Reese MG. Application of a time-delay neural network to promoter annotation in the Drosophila melanogaster genome. Comput Chem. 2001; 26: 51-56. PMID: 11765852
36. Holsters M, de Waele D, Depicker A, Messens E, van Montagu M, Schell J. Transfection and transformation of Agrobacterium tumefaciens. Mol Gen Genet. 1978; 163: 181-187. PMID: 355847
37. Hellens RP, Edwards EA, Leyland NR, Bean S, Mullineaux PM. pGreen: a versatile and flexible binary Ti vector for Agrobacterium-mediated plant transformation. Plant Mol Biol. 2000; 42: 819-832. PMID: 10890530
38. Horsch RB, Fry JE, Hofmann NL, Eichholtz D, Rogers SG, Fraley RT. A simple and general method for transferring genes into plants. Science. 1985; 227: 1229-1231. PMID: 17757866
39. Jefferson RA. Assaying chimeric genes in plants: the GUS fusion system. Plant Mol Biol Rep. 1987; 5: 387-405.
40. Jefferson RA, Kavanagh TA, Bevan MW. GUS fusions: beta-glucuronidase as a sensitive and versatile gene fusion marker in higher plants. EMBO J. 1987; 6: 3901-3907. PMID: 3327686
41. Thornton B, Basu C. Real-Time PCR (qPCR) primer design using free online software. Biochem Mol Biol Educ. 2011; 39: 145-154. doi: 10.1002/bmb.20461 PMID: 21445907
42. Kos̈ciańska E, Kalantidis K, Wypijewski K, Sadowski J, Tabler M. Analysis of RNA silencing in agroinfiltrated leaves of Nicotiana benthamiana and Nicotiana tabacum. Plant Mol Biol. 2005; 59: 647-661. PMID: 16244913
43. Sahoo DK, Ranjan R, Kumar D, Kumar A, Sahoo BS, Raha S, et al. An alternative method of promoter assessment by confocal laser scanning microscopy. J Virol Methods. 2009; 161: 114-121. doi:10.1016/j.jviromet.2009.06.011 PMID: 19540268
44. Ruiz-Medrano R, Guevara-González RG, Argüello-Astorga GR, Monsalve-Fonnegra Z, Herrera-Estrella LR, Rivera-Bustamante RF. Identification of a sequence element involved in AC2-mediated transactivation of the pepper huasteco virus coat protein gene. Virology. 1999; 253: 162-169. PMID: 9918875
45. Schwarz JJ, Chakraborty T, Martin J, Zhou J, Olson EN. The basic region of myogenin cooperates with two transcription activation domains to induce muscle-specific transcription. Mol Cell Biol. 1992; 12: 266-275. PMID: 1309591
46. Yanagisawa S, Schmidt RJ. Diversity and similarity among recognition sequences of Dof transcription factors. Plant J. 1999; 17: 209-214. PMID: 10074718
47. Wanapu C, Shinmyo A. cis-regulatory elements of the peroxidase gene in Arabidopsis thaliana involved in root-specific expression and responsiveness to high-salt stress. Ann N Y Acad Sci. 1996; 782: 107-114. PMID: 8659887
48. Goda H, Sawa S, Asami T, Fujioka S, Shimada Y, Yoshida S. Comprehensive comparison of auxin-regulated and brassinosteroid-regulated genes in Arabidopsis. Plant Physiol. 2004; 134: 1555-1573. PMID: 15047898
49. Ross EJH, Stone JM, Elowsky CG, Arredondo-Peter R, Klucas RV, Sarath G. Activation of the Oryza sativa non-symbiotic haemoglobin-2 promoter by the cytokinin-regulated transcription factor, ARR1. J Exp Bot. 2004; 55: 1721-1731. PMID: 15258171
50. Shirsat A, Wilford N, Croy R, Boulter D. Sequences responsible for the tissue specific promoter activity of a pea legumin gene in tobacco. Mol Gen Genet. 1989; 215: 326-331. PMID: 2710102
51. Gowik U, Burscheidt J, Akyildiz M, Schlue U, Koczor M, Streubel M, et al. cis-Regulatory elements for mesophyll-specific gene expression in the C4 plant Flaveria trinervia, the promoter of the C4 phosphoenolpyruvate carboxylase gene. Plant Cell. 2004; 16: 1077-1090. PMID: 15100398
52. Xu N, Hagen G, Guilfoyle T. Multiple auxin response modules in the soybean SAUR 15A promoter. Plant Science. 1997; 126: 193-201.
53. Yang T, Poovaiah BW. A calmodulin-binding/CGCG box DNA-binding protein family involved in multiple signaling pathways in plants. J Biol Chem. 2002; 277: 45049-45058. PMID: 12218065
54. Yanagisawa S. Dof1 and Dof2 transcription factors are associated with expression of multiple genes involved in carbon metabolism in maize. Plant J. 2000; 21: 281-288. PMID: 10758479
55. Hartmann U, Sagasser M, Mehrtens F, Stracke R, Weisshaar B. Differential combinatorial interactions of cis-acting elements recognized by R2R3-MYB, BZIP, and BHLH factors control light-responsive and tissue-specific activation of phenylpropanoid biosynthesis genes. Plant Mol Biol. 2005; 57: 155-171. PMID: 15821875
56. Agarwal M, Hao Y, Kapoor A, Dong CH, Fujii H, Zheng X, et al. A R2R3 type MYB transcription factor is involved in the cold regulation of CBF genes and in acquired freezing tolerance. J Biol Chem. 2006; 281: 37636-37645. PMID: 17015446
57. Elmayan T, Tepfer M. Evaluation in tobacco of the organ specificity and strength of the rol D promoter, domain A of the 35S promoter and the 35S2 promoter. Transgenic Res. 1995; 4: 388-396. PMID: 7581519
58. Maruyama-Nakashita A, Nakamura Y, Watanabe-Takahashi A, Inoue E, Yamaya T, Takahashi H. Identification of a novel cis-acting element conferring sulfur deficiency response in Arabidopsis roots. Plant J. 2005; 42: 305-314. PMID: 15842617
59. Hudson ME, Quail PH. Identification of promoter motifs involved in the network of phytochrome A-regulated gene expression by combined analysis of genomic sequence and microarray data. Plant Physiol. 2003; 133: 1605-1616. PMID: 14681527
60. Xu X, Chen C, Fan B, Chen Z. Physical and Functional interactions between pathogen-induced Arabidopsis WRKY18, WRKY40, and WRKY60 transcription factors. Plant Cell. 2006; 18: 1310-1326. PMID: 16603654
61. Nishiuchi T, Shinshi H, Suzuki K. Rapid and transient activation of transcription of the ERF3 gene by wounding in tobacco leaves: Possible involvement of NtWRKYs and autorepression. J Biol Chem. 2004; 279: 55355-55361. PMID: 15509567
62. Xie Z, Zhang ZL, Zou X, Huang J, Ruas P, Thompson D, et al. Annotations and functional analyses of the rice WRKY gene superfamily reveal positive and negative regulators of abscisic acid signaling in aleurone cells. Plant Physiol. 2005; 137: 176-189. PMID: 15618416
63. Solano R, Nieto C, Avila J, Canas L, Diaz I, Paz-Ares J. Dual DNA binding specificity of a petal epidermis-specific MYB transcription factor (MYB.Ph3) from Petunia hybrid. EMBO J. 1995; 14: 1773-1784. PMID: 7737128
64. Buchel AS, Brederode FT, Bol JF, Linthorst HJM. Mutation of GT-1 binding sites in the Pr-1A promoter influences the level of inducible gene expression in vivo. Plant Mol Biol. 1999; 40: 387-396. PMID: 10437823
65. Sunter G, Hartitz MD, Hormuzdi SG, Brough CL, Bisaro DM. Genetic analysis of tomato golden mosaic virus: ORF AL2 is required for coat protein accumulation while ORF AL3 is necessary for efficient DNA replication. Virology. 1990; 179: 69-77. PMID: 2219741
66. Hong Y, Saunders K, Hartley MR, Stanley J. Resistance to geminivirus infection by virus-induced expression of dianthin in transgenic plants. Virology. 1996; 220: 119-127. PMID: 8659104
67. Hofer JM, Dekker EL, Reynold HV, Woolston CJ, Cox BS, Mullineaux PM. Coordinate regulation of replication and virion sense gene expression in wheat dwarf virus. Plant Cell. 1992; 4: 213-223. PMID: 1633494
68. Usharani KS, Periasamy M, Malathi VG. Studies on the activity of a bidirectional promoter of Mungbean yellow mosaic India virus by agroinfiltration. Virus Res. 2006; 119: 154-162. PMID: 16458986