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Volumn 16, Issue 1, 2015, Pages

BACA: Bubble chArt to compare annotations

Author keywords

Enrichment analysis; R package; Visualize enrichment results

Indexed keywords

GENES; THROUGHPUT; WEBSITES;

EID: 84925628014     PISSN: None     EISSN: 14712105     Source Type: Journal    
DOI: 10.1186/s12859-015-0477-4     Document Type: Article
Times cited : (17)

References (9)
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    • Huang, D.W.1    Sherman, B.T.2    Tan, Q.3    Kir, J.4    Liu, D.5    Bryant, D.6
  • 3
    • 84886050414 scopus 로고    scopus 로고
    • RDAVIDWebService: A versatile R interface to DAVID
    • Fresno C, Fernández EA. RDAVIDWebService: A versatile R interface to DAVID. Bioinformatics. 2013;29:2810-1.
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    • Fresno, C.1    Fernández, E.A.2
  • 4
    • 25444469954 scopus 로고    scopus 로고
    • GObar: a gene ontology based analysis and visualization tool for gene sets
    • Lee JSM, Katari G, Sachidanandam R. GObar: a gene ontology based analysis and visualization tool for gene sets. BMC Bioinformatics. 2005;6:189.
    • (2005) BMC Bioinformatics , vol.6 , pp. 189
    • Lee, J.S.M.1    Katari, G.2    Sachidanandam, R.3
  • 5
    • 8844265260 scopus 로고    scopus 로고
    • GO-Mapper: Functional analysis of gene expression data using the expression level as a score to evaluate Gene Ontology terms
    • Smid M, Dorssers LCJ. GO-Mapper: Functional analysis of gene expression data using the expression level as a score to evaluate Gene Ontology terms. Bioinformatics. 2004;20:2618-25.
    • (2004) Bioinformatics , vol.20 , pp. 2618-2625
    • Smid, M.1    Dorssers, L.C.J.2
  • 6
    • 0038175144 scopus 로고    scopus 로고
    • GoMiner: a resource for biological interpretation of genomic and proteomic data
    • Zeeberg BR, Feng W, Wang G, Wang MD, Fojo AT, Sunshine M, et al. GoMiner: a resource for biological interpretation of genomic and proteomic data. Genome Biol. 2003;4:R28.
    • (2003) Genome Biol , vol.4 , pp. R28
    • Zeeberg, B.R.1    Feng, W.2    Wang, G.3    Wang, M.D.4    Fojo, A.T.5    Sunshine, M.6
  • 7
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    • GOEAST: a web-based software toolkit for Gene Ontology enrichment analysis
    • Zheng Q, Wang XJ. GOEAST: a web-based software toolkit for Gene Ontology enrichment analysis. Nucleic Acids Res. 2008;36:358-363.
    • (2008) Nucleic Acids Res , vol.36 , pp. 358-363
    • Zheng, Q.1    Wang, X.J.2
  • 8
    • 79960610118 scopus 로고    scopus 로고
    • Revigo summarizes and visualizes long lists of gene ontology terms
    • Supek F, Bošnjak M, Škunca N, Šmuc T. Revigo summarizes and visualizes long lists of gene ontology terms. PLoS One. 2011; 6:e21800.
    • (2011) PLoS One , vol.6 , pp. e21800
    • Supek, F.1    Bošnjak, M.2    Škunca, N.3    Šmuc, T.4
  • 9
    • 77749296886 scopus 로고    scopus 로고
    • ggplot2: elegant graphics for data analysis
    • Springer New York
    • H Wickham. ggplot2: elegant graphics for data analysis. Springer New York. 2009.
    • (2009)
    • Wickham, H.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.