Visualization of protein sequence features using JavaScript and SVG with pViz.js

Bioinformatics

Volumn 30, Issue 23, 2014, Pages 3408-3409

  Mukhyalay, Kiran ^a   Masselot, Alexandre ^a  

^a GENENTECH INC   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CHEMICAL STRUCTURE; COMPUTER GRAPHICS; COMPUTER PROGRAM; PROCEDURES; PROTEIN CONFORMATION; PROTEIN PROCESSING; PROTEOMICS; SEQUENCE ANALYSIS;

COMPUTER GRAPHICS; MODELS, MOLECULAR; PROTEIN CONFORMATION; PROTEIN PROCESSING, POST-TRANSLATIONAL; PROTEOMICS; SEQUENCE ANALYSIS, PROTEIN; SOFTWARE;

EID: 84925552844     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btu567     Document Type: Article

References (10)

1. Berman, H.M. et al. (2000) The protein data bank. Nucleic Acid Res., 28, 235-242.
2. Dowell, R.D. et al. (2001) The distributed annotation system. BMC Bioinformatics, 2, 7.
3. Gomez, J. et al. (2013) BioJS: an open source JavaScript framework for biological data visualization. Bioinformatics, 29, 1103-1104.
4. Hunter, S. et al. (2011) InterPro in 2011: new developments in the family and domain prediction database. Nuclei Acid Res., 33, W116-W120.
5. Lane, L. et al. (2012) neXtProt: a knowledge platform for human proteins. Nucleic Acids Res., 40, D76-D83.
6. Magrane, M. and UniProt Consortium (2011) Uniprot Knowledgebase: a hub of integrated protein data. Database bar009.
7. McLaren, W. et al. (2010) Deriving the consequences of genomic variants with the Ensembl API and SNP Effect Predictor. Bioinformatics, 26, 2069-2070.
8. Omasits, U. et al. (2013) Protter: interactive protein feature visualization and integration with experimental data. Bioinformatics, 30, 884-886.
9. Punta, M. et al. (2012) The Pfam protein families database. Nucleic Acid Res., 40, D290-D301.
10. Waterhouse, A.M. et al. (2009) Jalview Version 2-a multiple sequence alignment editor and analysis workbench. Bioinformatics, 25, 1189-1191.