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Volumn 26, Issue 13, 2010, Pages 1595-1600

Classification of DNA sequences using Bloom filters

Author keywords

[No Author keywords available]

Indexed keywords

ALGORITHM; ARTICLE; DNA SEQUENCE; HUMAN; METAGENOME; MICROBIOLOGY; MITOCHONDRIAL GENOME; RESPIRATORY SYSTEM; SENSITIVITY AND SPECIFICITY;

EID: 77954187316     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btq230     Document Type: Article
Times cited : (50)

References (17)
  • 1
    • 0035949592 scopus 로고    scopus 로고
    • A virus discovery method incorporating DNase treatment and its application to the identification of two bovine parvovirus species
    • Allander,T. et al. (2001) A virus discovery method incorporating DNase treatment and its application to the identification of two bovine parvovirus species. Proc. Natl Acad. Sci. USA, 98, 11609-11614.
    • (2001) Proc. Natl Acad. Sci. USA , vol.98 , pp. 11609-11614
    • Allander, T.1
  • 2
    • 24644516529 scopus 로고    scopus 로고
    • Cloning of a human parvovirus by molecular screening of respiratory tract samples
    • Allander,T. et al. (2005) Cloning of a human parvovirus by molecular screening of respiratory tract samples. Proc. Natl Acad. Sci. USA, 102, 12891-12896.
    • (2005) Proc. Natl Acad. Sci. USA , vol.102 , pp. 12891-12896
    • Allander, T.1
  • 3
    • 0014814325 scopus 로고
    • Space/time trade-offs in hash coding with allowable errors
    • Bloom,B.H. (1970) Space/time trade-offs in hash coding with allowable errors. Commun. ACM, 13, 422-426.
    • (1970) Commun. ACM , vol.13 , pp. 422-426
    • Bloom, B.H.1
  • 4
    • 70450232823 scopus 로고    scopus 로고
    • Network applications of Bloom filters: a survey
    • Broder,A. and Mitzenmacher,M. (2004) Network applications of Bloom filters: a survey. Internet Mathemathics, 1, 485-509.
    • (2004) Internet Mathemathics , vol.1 , pp. 485-509
    • Broder, A.1    Mitzenmacher, M.2
  • 5
    • 46949098742 scopus 로고    scopus 로고
    • A Bayesian deconvolution strategy for immunoprecipitationbased DNA methylome analysis
    • Down,T.A. et al. (2008) A Bayesian deconvolution strategy for immunoprecipitationbased DNA methylome analysis. Nat. Biotechnol., 26, 779-785.
    • (2008) Nat. Biotechnol. , vol.26 , pp. 779-785
    • Down, T.A.1
  • 6
    • 0036226603 scopus 로고    scopus 로고
    • BLAT-the BLAST-like alignment tool
    • Kent,W.J. (2002) BLAT-the BLAST-like alignment tool. Genome Res., 12, 656-664.
    • (2002) Genome Res. , vol.12 , pp. 656-664
    • Kent, W.J.1
  • 7
    • 62349130698 scopus 로고    scopus 로고
    • Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
    • Langmead,B. et al. (2009) Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol., 10, R25.
    • (2009) Genome Biol. , vol.10
    • Langmead, B.1
  • 8
    • 55549101623 scopus 로고    scopus 로고
    • DNA sequencing of a cytogenetically normal acute myeloid leukaemia genome
    • Ley,T.J. et al. (2008) DNA sequencing of a cytogenetically normal acute myeloid leukaemia genome. Nature, 456, 66-72.
    • (2008) Nature , vol.456 , pp. 66-72
    • Ley, T.J.1
  • 9
    • 67649884743 scopus 로고    scopus 로고
    • Fast and accurate short read alignment with Burrows-Wheeler transform
    • Li,H. and Durbin,R. (2009) Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics, 25, 1754-1760.
    • (2009) Bioinformatics , vol.25 , pp. 1754-1760
    • Li, H.1    Durbin, R.2
  • 10
    • 55549097836 scopus 로고    scopus 로고
    • Mapping short DNA sequencing reads and calling variants using mapping quality scores
    • Li,H. et al. (2008a) Mapping short DNA sequencing reads and calling variants using mapping quality scores. Genome Res., 18, 1851-1858.
    • (2008) Genome Res. , vol.18 , pp. 1851-1858
    • Li, H.1
  • 11
    • 40049104732 scopus 로고    scopus 로고
    • SOAP: short oligonucleotide alignment program
    • Li,R. et al. (2008b) SOAP: short oligonucleotide alignment program. Bioinformatics, 24, 713-714.
    • (2008) Bioinformatics , vol.24 , pp. 713-714
    • Li, R.1
  • 12
    • 24044455869 scopus 로고    scopus 로고
    • Genome sequencing in microfabricated high-density picolitre reactors
    • Margulies,M. et al. (2005) Genome sequencing in microfabricated high-density picolitre reactors. Nature, 437, 376-380.
    • (2005) Nature , vol.437 , pp. 376-380
    • Margulies, M.1
  • 13
    • 0034764307 scopus 로고    scopus 로고
    • SSAHA: a fast search method for large DNA databases
    • Ning,Z. et al. (2001) SSAHA: a fast search method for large DNA databases. Genome Res., 11, 1725-1729.
    • (2001) Genome Res. , vol.11 , pp. 1725-1729
    • Ning, Z.1
  • 14
    • 54949137701 scopus 로고    scopus 로고
    • MetaSim: a sequencing simulator for genomics and metagenomics
    • Richter,D.C. et al. (2008) MetaSim: a sequencing simulator for genomics and metagenomics. PLoS ONE, 3, e3373.
    • (2008) PLoS ONE , vol.3
    • Richter, D.C.1
  • 15
    • 67049159825 scopus 로고    scopus 로고
    • SHRiMP: accurate mapping of short color-space reads
    • Rumble,S.M. et al. (2009) SHRiMP: accurate mapping of short color-space reads. PLoS Comput. Biol., 5, e1000386.
    • (2009) PLoS Comput. Biol. , vol.5
    • Rumble, S.M.1
  • 16
    • 33947238287 scopus 로고    scopus 로고
    • The Sorcerer II Global Ocean Sampling expedition: northwest Atlantic through eastern tropical Pacific
    • Rusch,D.B. et al. (2007) The Sorcerer II Global Ocean Sampling expedition: northwest Atlantic through eastern tropical Pacific. PLoS Biol., 5, e77.
    • (2007) PLoS Biol. , vol.5
    • Rusch, D.B.1
  • 17
    • 0034053725 scopus 로고    scopus 로고
    • A greedy algorithm for aligning DNA sequences
    • Zhang,Z. et al. (2000) A greedy algorithm for aligning DNA sequences. J. Comput. Biol., 7, 203-214.
    • (2000) J. Comput. Biol. , vol.7 , pp. 203-214
    • Zhang, Z.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.