-
1
-
-
33747346997
-
Eukaryotic community distribution and its relationship to water physicochemical parameters in an extreme acidic environment, Río Tinto (Southwestern Spain)
-
COI: 1:CAS:528:DC%2BD28XosVKls7g%3D
-
Aguilera A, Manrubia SC, Gómez F, Rodríguez N, Amils R (2006) Eukaryotic community distribution and its relationship to water physicochemical parameters in an extreme acidic environment, Río Tinto (Southwestern Spain). Appl Environ Microb 72:5325–5330
-
(2006)
Appl Environ Microb
, vol.72
, pp. 5325-5330
-
-
Aguilera, A.1
Manrubia, S.C.2
Gómez, F.3
Rodríguez, N.4
Amils, R.5
-
2
-
-
58549088341
-
Microbial eukaryotes in the hypersaline anoxic L’Atalante deep-sea basin
-
COI: 1:CAS:528:DC%2BD1MXjtlyit7o%3D, PID: 18826436
-
Alexander E, Stock A, Breiner HW, Behnke A, Bunge J, Yakimov MM, Stoeck T (2009) Microbial eukaryotes in the hypersaline anoxic L’Atalante deep-sea basin. Environ Microbiol 11:360–381
-
(2009)
Environ Microbiol
, vol.11
, pp. 360-381
-
-
Alexander, E.1
Stock, A.2
Breiner, H.W.3
Behnke, A.4
Bunge, J.5
Yakimov, M.M.6
Stoeck, T.7
-
3
-
-
0037046556
-
Microbiology: eukaryotic diversity in Spain’s River of Fire
-
COI: 1:CAS:528:DC%2BD38XjsVyrt7s%3D, PID: 12000949
-
Amaral-Zettler LA, Gómez F, Zettler E, Keenan BG, Amils R, Sogin ML (2002) Microbiology: eukaryotic diversity in Spain’s River of Fire. Nature 417:137
-
(2002)
Nature
, vol.417
, pp. 137
-
-
Amaral-Zettler, L.A.1
Gómez, F.2
Zettler, E.3
Keenan, B.G.4
Amils, R.5
Sogin, M.L.6
-
4
-
-
68149178616
-
A method for studying protistan diversity using massively parallel sequencing of V9 hypervariable regions of small-subunit ribosomal RNA genes
-
PID: 19633714
-
Amaral-Zettler LA, McCliment EA, Ducklow HW, Huse SM (2009) A method for studying protistan diversity using massively parallel sequencing of V9 hypervariable regions of small-subunit ribosomal RNA genes. PLoS One 4:e6372. doi:10.1371/journal.pone.0006372
-
(2009)
PLoS One
, vol.4
, pp. 6372
-
-
Amaral-Zettler, L.A.1
McCliment, E.A.2
Ducklow, H.W.3
Huse, S.M.4
-
5
-
-
78650617907
-
Microbial community structure across the tree of life in the extreme Río Tinto
-
PID: 20631808
-
Amaral-Zettler LA, Zettler ER, Theroux SM, Palacios C, Aguilera A, Amils R (2011) Microbial community structure across the tree of life in the extreme Río Tinto. ISME J 5:42–50
-
(2011)
ISME J
, vol.5
, pp. 42-50
-
-
Amaral-Zettler, L.A.1
Zettler, E.R.2
Theroux, S.M.3
Palacios, C.4
Aguilera, A.5
Amils, R.6
-
6
-
-
78650161976
-
Quantifying microbial communities with 454 pyrosequencing: does read abundance count?
-
COI: 1:CAS:528:DC%2BC3MXhtlagsb0%3D, PID: 21050295
-
Amend AS, Seifert KA, Bruns TD (2010) Quantifying microbial communities with 454 pyrosequencing: does read abundance count? Mol Ecol 19:5555–5565
-
(2010)
Mol Ecol
, vol.19
, pp. 5555-5565
-
-
Amend, A.S.1
Seifert, K.A.2
Bruns, T.D.3
-
7
-
-
85166916238
-
Gephi: an open source software for exploring and manipulating networks
-
Bastian M, Heymann S, Jacomy M (2009) Gephi: an open source software for exploring and manipulating networks. ICWSM 8:361–362
-
(2009)
ICWSM
, vol.8
, pp. 361-362
-
-
Bastian, M.1
Heymann, S.2
Jacomy, M.3
-
8
-
-
79551476785
-
Depicting more accurate pictures of protistan community complexity using pyrosequencing of hypervariable SSU rRNA gene regions
-
COI: 1:CAS:528:DC%2BC3MXjsVKns70%3D
-
Behnke A, Engel M, Christen R, Nebel M, Klein R, Stoeck T (2011) Depicting more accurate pictures of protistan community complexity using pyrosequencing of hypervariable SSU rRNA gene regions. Env Microbiol 13:340–349
-
(2011)
Env Microbiol
, vol.13
, pp. 340-349
-
-
Behnke, A.1
Engel, M.2
Christen, R.3
Nebel, M.4
Klein, R.5
Stoeck, T.6
-
9
-
-
33750618212
-
A molecular time-scale for eukaryote evolution recalibrated with the continuous microfossil record
-
COI: 1:CAS:528:DC%2BD28Xps1Gjt78%3D
-
Berney C, Pawlowski J (2006) A molecular time-scale for eukaryote evolution recalibrated with the continuous microfossil record. Proc Roy Soc B Biol Sci 273:1867–1872
-
(2006)
Proc Roy Soc B Biol Sci
, vol.273
, pp. 1867-1872
-
-
Berney, C.1
Pawlowski, J.2
-
10
-
-
33847041452
-
Cryptic species as a window on diversity and conservation
-
PID: 17129636
-
Bickford D, Lohman DJ, Sodhi NS et al (2007) Cryptic species as a window on diversity and conservation. Trends Ecol Evol 22:148–155
-
(2007)
Trends Ecol Evol
, vol.22
, pp. 148-155
-
-
Bickford, D.1
Lohman, D.J.2
Sodhi, N.S.3
-
11
-
-
84860353306
-
Fast, accurate error-correction of amplicon pyrosequences using Acacia
-
COI: 1:CAS:528:DC%2BC38Xmt1WmtrY%3D, PID: 22543370
-
Bragg L, Stone G, Imelfort M, Hugenholtz P, Tyson GW (2012) Fast, accurate error-correction of amplicon pyrosequences using Acacia. Nat Methods 9:425–426
-
(2012)
Nat Methods
, vol.9
, pp. 425-426
-
-
Bragg, L.1
Stone, G.2
Imelfort, M.3
Hugenholtz, P.4
Tyson, G.W.5
-
12
-
-
77956094384
-
Freshwater Perkinsea and marine-freshwater colonizations revealed by pyrosequencing and phylogeny of environmental rDNA
-
PID: 20393574
-
Bråte J, Logares R, Berney C, Ree DK, Klaveness D, Jakobsen KS, Shalchian-Tabrizi K (2010) Freshwater Perkinsea and marine-freshwater colonizations revealed by pyrosequencing and phylogeny of environmental rDNA. ISME J 4:1144–1153
-
(2010)
ISME J
, vol.4
, pp. 1144-1153
-
-
Bråte, J.1
Logares, R.2
Berney, C.3
Ree, D.K.4
Klaveness, D.5
Jakobsen, K.S.6
Shalchian-Tabrizi, K.7
-
13
-
-
77952243141
-
QIIME allows analysis of high-throughput community sequencing data
-
COI: 1:CAS:528:DC%2BC3cXksFalurg%3D, PID: 20383131
-
Caporaso JG, Kuczynski J, Stombaugh J et al (2010) QIIME allows analysis of high-throughput community sequencing data. Nat Methods 7:335
-
(2010)
Nat Methods
, vol.7
, pp. 335
-
-
Caporaso, J.G.1
Kuczynski, J.2
Stombaugh, J.3
-
14
-
-
83655192943
-
Marine protistan diversity
-
PID: 22457984
-
Caron DA, Countway PD, Jones AC, Kim DY, Schnetzer A (2012) Marine protistan diversity. Ann Rev Mar Sci 4:467–493
-
(2012)
Ann Rev Mar Sci
, vol.4
, pp. 467-493
-
-
Caron, D.A.1
Countway, P.D.2
Jones, A.C.3
Kim, D.Y.4
Schnetzer, A.5
-
15
-
-
70149117756
-
Defining DNA-based operational taxonomic units for microbial-eukaryote ecology
-
COI: 1:CAS:528:DC%2BD1MXhsVSmtb7K, PID: 19592529
-
Caron DA, Countway PD, Savai P et al (2009) Defining DNA-based operational taxonomic units for microbial-eukaryote ecology. Appl Environ Microbiol 75:5797–5808
-
(2009)
Appl Environ Microbiol
, vol.75
, pp. 5797-5808
-
-
Caron, D.A.1
Countway, P.D.2
Savai, P.3
-
16
-
-
0035984122
-
Changes in archaeal, bacterial and eukaryal assemblages along a salinity gradient by comparison of genetic fingerprinting methods in a multipond solar saltern
-
PID: 12071979
-
Casamayor EO, Massana R, Benlloch S et al (2002) Changes in archaeal, bacterial and eukaryal assemblages along a salinity gradient by comparison of genetic fingerprinting methods in a multipond solar saltern. Environ Microbiol 4:338–348
-
(2002)
Environ Microbiol
, vol.4
, pp. 338-348
-
-
Casamayor, E.O.1
Massana, R.2
Benlloch, S.3
-
17
-
-
84881552602
-
Microbial biodiversity in saline shallow lakes of the Monegros Desert, Spain
-
COI: 1:CAS:528:DC%2BC3sXhsVemsrrI, PID: 23621854
-
Casamayor EO, Triadó-Margarit X, Castañeda C (2013) Microbial biodiversity in saline shallow lakes of the Monegros Desert, Spain. FEMS Microbiol Ecol 85:503–518
-
(2013)
FEMS Microbiol Ecol
, vol.85
, pp. 503-518
-
-
Casamayor, E.O.1
Triadó-Margarit, X.2
Castañeda, C.3
-
18
-
-
54249105870
-
Morphology and molecular phylogeny of Trimyema koreanum n. sp., a ciliate from the hypersaline water of a solar saltern
-
PID: 19017062
-
Cho BC, Park JS, Xu K, Choi JK (2008) Morphology and molecular phylogeny of Trimyema koreanum n. sp., a ciliate from the hypersaline water of a solar saltern. J Eukaryot Microbiol 55:417–426
-
(2008)
J Eukaryot Microbiol
, vol.55
, pp. 417-426
-
-
Cho, B.C.1
Park, J.S.2
Xu, K.3
Choi, J.K.4
-
19
-
-
43349094507
-
The igraph software package for complex network research
-
Csárdi G, Nepusz T (2006) The igraph software package for complex network research. Inter J Complex Syst 1695
-
(2006)
Inter J Complex Syst
, pp. 1695
-
-
Csárdi, G.1
Nepusz, T.2
-
20
-
-
84858702221
-
Comparing the hyper-variable V4 and V9 regions of the small subunit rDNA for assessment of ciliate environmental diversity
-
COI: 1:CAS:528:DC%2BC38Xms1yntLo%3D, PID: 22236102
-
Dunthorn M, Klier J, Bunge J, Stoeck T (2012) Comparing the hyper-variable V4 and V9 regions of the small subunit rDNA for assessment of ciliate environmental diversity. J Eukaryot Microbiol 59:185–187
-
(2012)
J Eukaryot Microbiol
, vol.59
, pp. 185-187
-
-
Dunthorn, M.1
Klier, J.2
Bunge, J.3
Stoeck, T.4
-
21
-
-
84897866461
-
Placing environmental next-generation sequencing amplicons from microbial eukaryotes into a phylogenetic context
-
COI: 1:CAS:528:DC%2BC2cXks12js74%3D, PID: 24473288
-
Dunthorn M, Otto J, Berger SA et al (2014a) Placing environmental next-generation sequencing amplicons from microbial eukaryotes into a phylogenetic context. Mol Biol Evol 31:993–1009
-
(2014)
Mol Biol Evol
, vol.31
, pp. 993-1009
-
-
Dunthorn, M.1
Otto, J.2
Berger, S.A.3
-
22
-
-
84903908842
-
Ciliates and the rare biopshere: a review
-
PID: 24801645
-
Dunthorn M, Stoeck T, Clamp J, Warren A, Mahé F (2014b) Ciliates and the rare biopshere: a review. J Eukaryot Microbiol 61:404–409
-
(2014)
J Eukaryot Microbiol
, vol.61
, pp. 404-409
-
-
Dunthorn, M.1
Stoeck, T.2
Clamp, J.3
Warren, A.4
Mahé, F.5
-
23
-
-
77957244650
-
Search and clustering orders of magnitude faster than BLAST
-
COI: 1:CAS:528:DC%2BC3cXht1WhtbzM, PID: 20709691
-
Edgar RC (2010) Search and clustering orders of magnitude faster than BLAST. Bioinformatics 26:2460–2461
-
(2010)
Bioinformatics
, vol.26
, pp. 2460-2461
-
-
Edgar, R.C.1
-
25
-
-
58149197584
-
Protistan community patterns within the brine and halocline of deep hypersaline anoxic basins in the eastern Mediterranean Sea
-
PID: 19057844
-
Edgcomb V, Orsi W, Leslin C et al (2009) Protistan community patterns within the brine and halocline of deep hypersaline anoxic basins in the eastern Mediterranean Sea. Extremophiles 13:151–167
-
(2009)
Extremophiles
, vol.13
, pp. 151-167
-
-
Edgcomb, V.1
Orsi, W.2
Leslin, C.3
-
26
-
-
32444437234
-
Composition and distribution of planktonic ciliates from ponds of different salinity in the solar saltwork of Sfax, Tunisia
-
Elloumi J, Carrias J-F, Ayadi H, Sime-Ngando T, Boukhris M, Bouain A (2006) Composition and distribution of planktonic ciliates from ponds of different salinity in the solar saltwork of Sfax, Tunisia. Estuar Coast Shelf Sci 67:21–29
-
(2006)
Estuar Coast Shelf Sci
, vol.67
, pp. 21-29
-
-
Elloumi, J.1
Carrias, J.-F.2
Ayadi, H.3
Sime-Ngando, T.4
Boukhris, M.5
Bouain, A.6
-
27
-
-
57649083918
-
Communities structure of the planktonic halophiles in the solar saltern of Sfax, Tunisia
-
Elloumi J, Carrias J-F, Ayadi H, Sime-Ngando T, Bouaïn A (2009a) Communities structure of the planktonic halophiles in the solar saltern of Sfax, Tunisia. Estuar Coast Shelf Sci 81:19–26
-
(2009)
Estuar Coast Shelf Sci
, vol.81
, pp. 19-26
-
-
Elloumi, J.1
Carrias, J.-F.2
Ayadi, H.3
Sime-Ngando, T.4
Bouaïn, A.5
-
28
-
-
67649579815
-
Abundance and biomass of prokaryotic and eukaryotic microorganisms coupled with environmental factors in an arid multi-pond solar saltern (Sfax, Tunisia)
-
Elloumi J, Guermazi W, Ayadi H, Bouain A, Aleya L (2009b) Abundance and biomass of prokaryotic and eukaryotic microorganisms coupled with environmental factors in an arid multi-pond solar saltern (Sfax, Tunisia). J Mar Biol Assoc UK 89:243–253
-
(2009)
J Mar Biol Assoc UK
, vol.89
, pp. 243-253
-
-
Elloumi, J.1
Guermazi, W.2
Ayadi, H.3
Bouain, A.4
Aleya, L.5
-
29
-
-
77951498638
-
Experimental factors affecting PCR-based estimates of microbial species richness and evenness
-
COI: 1:CAS:528:DC%2BC3cXkvFemtbo%3D, PID: 20090784
-
Engelbrektson A, Kunin V, Wrighton KC, Zvenigorodsky N, Chen F, Ochman H et al (2010) Experimental factors affecting PCR-based estimates of microbial species richness and evenness. ISME J 4:642–647
-
(2010)
ISME J
, vol.4
, pp. 642-647
-
-
Engelbrektson, A.1
Kunin, V.2
Wrighton, K.C.3
Zvenigorodsky, N.4
Chen, F.5
Ochman, H.6
-
30
-
-
38649124950
-
Missing” protists: a molecular prospective
-
Epstein S, López-García P (2008) “Missing” protists: a molecular prospective. Biodivers Conserv 17:261–276
-
(2008)
Biodivers Conserv
, vol.17
, pp. 261-276
-
-
Epstein, S.1
López-García, P.2
-
31
-
-
3142748599
-
Diversity of planktonic photoautotrophic microorganisms along a salinity gradient as depicted by microscopy, flow cytometry, pigment analysis and DNA-based methods
-
COI: 1:CAS:528:DC%2BD2cXlsl2hsrw%3D, PID: 19712421
-
Estrada M, Henriksen P, Gasol JM, Casamayor EO, Pedrós-Alió C (2004) Diversity of planktonic photoautotrophic microorganisms along a salinity gradient as depicted by microscopy, flow cytometry, pigment analysis and DNA-based methods. FEMS Microbiol Ecol 49:281–293
-
(2004)
FEMS Microbiol Ecol
, vol.49
, pp. 281-293
-
-
Estrada, M.1
Henriksen, P.2
Gasol, J.M.3
Casamayor, E.O.4
Pedrós-Alió, C.5
-
32
-
-
84898056889
-
Morphology, ontogenesis and molecular phylogeny of Platynematum salinarum nov. spec., a new scuticociliate (Ciliophora, Scuticociliatia) from a solar saltern
-
PID: 24370338
-
Foissner W, Jung JH, Filker S, Rudolph J, Stoeck T (2014a) Morphology, ontogenesis and molecular phylogeny of Platynematum salinarum nov. spec., a new scuticociliate (Ciliophora, Scuticociliatia) from a solar saltern. Eur J Protistol 50:174–184
-
(2014)
Eur J Protistol
, vol.50
, pp. 174-184
-
-
Foissner, W.1
Jung, J.H.2
Filker, S.3
Rudolph, J.4
Stoeck, T.5
-
33
-
-
84893641195
-
Schmidingerothrix salinarum nov. spec. is the molecular sister of the large oxytrichid clade (Ciliophora, Hypotricha)
-
COI: 1:CAS:528:DC%2BC2cXhsVChtLY%3D, PID: 24147743
-
Foissner W, Filker S, Stoeck T (2014b) Schmidingerothrix salinarum nov. spec. is the molecular sister of the large oxytrichid clade (Ciliophora, Hypotricha). J Eukaryot Microbiol 61:61–74
-
(2014)
J Eukaryot Microbiol
, vol.61
, pp. 61-74
-
-
Foissner, W.1
Filker, S.2
Stoeck, T.3
-
34
-
-
84869128525
-
Meta-analyses of environmental sequence data identify anoxia and salinity as parameters shaping ciliate communities
-
Forster D, Behnke A, Stoeck T (2012) Meta-analyses of environmental sequence data identify anoxia and salinity as parameters shaping ciliate communities. Syst Biodivers 10:277–288
-
(2012)
Syst Biodivers
, vol.10
, pp. 277-288
-
-
Forster, D.1
Behnke, A.2
Stoeck, T.3
-
35
-
-
0030464460
-
SEAVIEW and PHYLO_WIN: two graphic tools for sequence alignment and molecular phylogeny
-
COI: 1:CAS:528:DyaK2sXhtlWktLw%3D, PID: 9021275
-
Galtier N, Gouy M, Gautier C (1996) SEAVIEW and PHYLO_WIN: two graphic tools for sequence alignment and molecular phylogeny. Comput Appl Biosci 12:543–548
-
(1996)
Comput Appl Biosci
, vol.12
, pp. 543-548
-
-
Galtier, N.1
Gouy, M.2
Gautier, C.3
-
36
-
-
0023958997
-
Phylogenetic group-specific oligodeoxynucleotide probes for identification of single microbial cells
-
COI: 1:CAS:528:DyaL1cXktF2lsbY%3D, PID: 2448289
-
Giovannoni SJ, DeLong EF, Olsen GJ, Pace NR (1988) Phylogenetic group-specific oligodeoxynucleotide probes for identification of single microbial cells. J Bacteriol 170:720–726
-
(1988)
J Bacteriol
, vol.170
, pp. 720-726
-
-
Giovannoni, S.J.1
DeLong, E.F.2
Olsen, G.J.3
Pace, N.R.4
-
38
-
-
42949116727
-
Heterotrophic protozoa from hypersaline environments
-
Gunde-Cimerman N, Oren A, Plemenitas A, (eds), 9, Springer, Dordrecht:
-
Hauer G, Rogerson A (2005) Heterotrophic protozoa from hypersaline environments. In: Gunde-Cimerman N, Oren A, Plemenitas A (eds) Adaptation to life at high salt concentrations in archaea, bacteria, and eukarya. Cellular origin, life in extreme habitats and astrobiology, vol 9. Springer, Dordrecht, pp 519–540
-
(2005)
Adaptation to life at high salt concentrations in archaea, bacteria, and eukarya. Cellular origin, life in extreme habitats and astrobiology
, pp. 519-540
-
-
Hauer, G.1
Rogerson, A.2
-
39
-
-
76849112868
-
Molecular phylogeny of euglyphid testate amoebae (Cercozoa: Euglyphida) suggests transitions between marine supralittoral and freshwater/terrestrial environments are infrequent
-
COI: 1:CAS:528:DC%2BC3cXit1Ggu7c%3D, PID: 20004728
-
Heger TJ, Mitchell EAD, Todorov M, Golemansky V, Lara E, Leander BS, Pawlowski J (2010) Molecular phylogeny of euglyphid testate amoebae (Cercozoa: Euglyphida) suggests transitions between marine supralittoral and freshwater/terrestrial environments are infrequent. Mol Phylogenet Evol 55:113–122
-
(2010)
Mol Phylogenet Evol
, vol.55
, pp. 113-122
-
-
Heger, T.J.1
Mitchell, E.A.D.2
Todorov, M.3
Golemansky, V.4
Lara, E.5
Leander, B.S.6
Pawlowski, J.7
-
40
-
-
84880094479
-
Characterization of eukaryotic microbial diversity in hypersaline Lake Tyrrell, Australia
-
Heidelberg KB, Nelson WC, Holm JB, Eisenkolb N, Andrade K, Emerson JB (2013) Characterization of eukaryotic microbial diversity in hypersaline Lake Tyrrell, Australia. Front Microbiol 4
-
(2013)
Front Microbiol
, pp. 4
-
-
Heidelberg, K.B.1
Nelson, W.C.2
Holm, J.B.3
Eisenkolb, N.4
Andrade, K.5
Emerson, J.B.6
-
41
-
-
33847281506
-
Soil fungal communities underneath willow canopies on a primary successional glacier forefront: rDNA sequence results can be affected by primer selection and chimeric data
-
COI: 1:CAS:528:DC%2BD2sXisVKksbg%3D
-
Jumpponen A (2007) Soil fungal communities underneath willow canopies on a primary successional glacier forefront: rDNA sequence results can be affected by primer selection and chimeric data. Microbial Ecol 53:233–246
-
(2007)
Microbial Ecol
, vol.53
, pp. 233-246
-
-
Jumpponen, A.1
-
42
-
-
84866109504
-
Hypervariable regions (V1–V9) of the dinoflagellate 18S rRNA using a large dataset for marker considerations
-
COI: 1:CAS:528:DC%2BC38XhtleiurrM
-
Ki JS (2012) Hypervariable regions (V1–V9) of the dinoflagellate 18S rRNA using a large dataset for marker considerations. J Appl Phycol 24:1035–1043
-
(2012)
J Appl Phycol
, vol.24
, pp. 1035-1043
-
-
Ki, J.S.1
-
43
-
-
84925471151
-
Genomic adaptations of the halophilic Dead Sea filamentous fungus Eurotium rubrum
-
Kis-Papo T, Weig AR, Riley R, Peršoh D, Salamov A, Sun H, Lipzen A, Wasser SP, et al. (2014) Genomic adaptations of the halophilic Dead Sea filamentous fungus Eurotium rubrum. Nat Commun 5
-
(2014)
Nat Commun
, pp. 5
-
-
Kis-Papo, T.1
Weig, A.R.2
Riley, R.3
Peršoh, D.4
Salamov, A.5
Sun, H.6
Lipzen, A.7
Wasser, S.P.8
-
44
-
-
3442882463
-
A new period for the geologic time scale
-
COI: 1:CAS:528:DC%2BD2cXmt1SjsL8%3D, PID: 15286353
-
Knoll AH, Walter MR, Narbonne GM, Christi-Blick N (2004) A new period for the geologic time scale. Science 305:621–622
-
(2004)
Science
, vol.305
, pp. 621-622
-
-
Knoll, A.H.1
Walter, M.R.2
Narbonne, G.M.3
Christi-Blick, N.4
-
45
-
-
73349110099
-
Wrinkles in the rare biosphere: pyrosequencing errors lead to artificial inflation of diversity estimates
-
COI: 1:CAS:528:DC%2BC3cXhvFaisb4%3D, PID: 19725865
-
Kunin V, Engelbrektson A, Ochman H, Hugenholtz P (2010) Wrinkles in the rare biosphere: pyrosequencing errors lead to artificial inflation of diversity estimates. Environ Microbiol 12:118–123
-
(2010)
Environ Microbiol
, vol.12
, pp. 118-123
-
-
Kunin, V.1
Engelbrektson, A.2
Ochman, H.3
Hugenholtz, P.4
-
46
-
-
0016139829
-
Salt-dependent properties of proteins from extremely halophilic bacteria
-
COI: 1:CAS:528:DyaE2MXht1ehsA%3D%3D, PID: 4607500
-
Lanyi JK (1974) Salt-dependent properties of proteins from extremely halophilic bacteria. Bacteriol Rev 38:272–290
-
(1974)
Bacteriol Rev
, vol.38
, pp. 272-290
-
-
Lanyi, J.K.1
-
47
-
-
35948999735
-
Cultivation-independent analysis reveals a shift in ciliate 18S rRNA gene diversity in a polycyclic aromatic hydrocarbon-polluted soil
-
COI: 1:CAS:528:DC%2BD2sXhsValtr%2FP, PID: 17949434
-
Lara E, Berney C, Harms H, Chatzinotas A (2007) Cultivation-independent analysis reveals a shift in ciliate 18S rRNA gene diversity in a polycyclic aromatic hydrocarbon-polluted soil. FEMS Microbiol Ecol 62:365–373
-
(2007)
FEMS Microbiol Ecol
, vol.62
, pp. 365-373
-
-
Lara, E.1
Berney, C.2
Harms, H.3
Chatzinotas, A.4
-
48
-
-
0033168076
-
Causes and consequences of recent freshwater invasions by saltwater animals
-
Lee CE, Bell MA (1999) Causes and consequences of recent freshwater invasions by saltwater animals. Trends Ecol Evol 14:282–288
-
(1999)
Trends Ecol Evol
, vol.14
, pp. 282-288
-
-
Lee, C.E.1
Bell, M.A.2
-
49
-
-
70649083335
-
Community structure and seasonal dynamics of planktonic ciliates along salinity gradients
-
PID: 19525098
-
Lei Y, Xu K, Choi JK, Hong HP, Wickham SA (2009) Community structure and seasonal dynamics of planktonic ciliates along salinity gradients. Eur J Protistol 45:305–319
-
(2009)
Eur J Protistol
, vol.45
, pp. 305-319
-
-
Lei, Y.1
Xu, K.2
Choi, J.K.3
Hong, H.P.4
Wickham, S.A.5
-
50
-
-
69749086719
-
Infrequent marine-freshwater transitions in the microbial world
-
COI: 1:CAS:528:DC%2BD1MXhtFajtrnF, PID: 19726194
-
Logares R, Bråte J, Bertilsson S, Clasen JL, Shalchian-Tabrizi K, Rengefors K (2009) Infrequent marine-freshwater transitions in the microbial world. Trends Microbiol 17:414–422
-
(2009)
Trends Microbiol
, vol.17
, pp. 414-422
-
-
Logares, R.1
Bråte, J.2
Bertilsson, S.3
Clasen, J.L.4
Shalchian-Tabrizi, K.5
Rengefors, K.6
-
51
-
-
74549165386
-
Infrequent transitions between saline and fresh waters in one of the most abundant microbial lineages (SAR11)
-
COI: 1:CAS:528:DC%2BC3cXntlGntA%3D%3D, PID: 19808864
-
Logares R, Bråte J, Heinrich F, Shalchian-Tabrizi K, Bertilsson S (2010) Infrequent transitions between saline and fresh waters in one of the most abundant microbial lineages (SAR11). Mol Biol Evol 27:347–357
-
(2010)
Mol Biol Evol
, vol.27
, pp. 347-357
-
-
Logares, R.1
Bråte, J.2
Heinrich, F.3
Shalchian-Tabrizi, K.4
Bertilsson, S.5
-
52
-
-
84867740787
-
Diversity patterns and activity of uncultured marine heterotrophic flagellates unveiled with pyrosequencing
-
COI: 1:CAS:528:DC%2BC38Xhtlynt7vO, PID: 22534609
-
Logares R, Audic S, Santini S, Pernice MC, de Vargas C, Massana R (2012) Diversity patterns and activity of uncultured marine heterotrophic flagellates unveiled with pyrosequencing. ISME J 6:1823–1833
-
(2012)
ISME J
, vol.6
, pp. 1823-1833
-
-
Logares, R.1
Audic, S.2
Santini, S.3
Pernice, M.C.4
de Vargas, C.5
Massana, R.6
-
53
-
-
0034933580
-
Diversity of free-living prokaryotes from a deep-sea site at the Antarctic Polar Front Fems microbiology
-
López-Garcia P, Lopez-Lopez A, Moreira D, Rodriguez-Valera F (2001) Diversity of free-living prokaryotes from a deep-sea site at the Antarctic Polar Front Fems microbiology. Ecology 36:193–202
-
(2001)
Ecology
, vol.36
, pp. 193-202
-
-
López-Garcia, P.1
Lopez-Lopez, A.2
Moreira, D.3
Rodriguez-Valera, F.4
-
54
-
-
34547433545
-
Global patterns in bacterial diversity
-
COI: 1:CAS:528:DC%2BD2sXnvFOms7c%3D, PID: 17592124
-
Lozupone C, Knight R (2007) Global patterns in bacterial diversity. Proc Natl Acad Sci USA 104:11436–11440
-
(2007)
Proc Natl Acad Sci USA
, vol.104
, pp. 11436-11440
-
-
Lozupone, C.1
Knight, R.2
-
55
-
-
84867742872
-
Targeted recovery of novel phylogenetic diversity from next-generation sequence data
-
COI: 1:CAS:528:DC%2BC38XhsFers7nO, PID: 22791239
-
Lynch MD, Bartram AK, Neufeld JD (2012) Targeted recovery of novel phylogenetic diversity from next-generation sequence data. ISME J 6:2067–2077
-
(2012)
ISME J
, vol.6
, pp. 2067-2077
-
-
Lynch, M.D.1
Bartram, A.K.2
Neufeld, J.D.3
-
57
-
-
84907710189
-
Swarm: a fast and robust clustering method for amplicon-based studies
-
PID: 25276506
-
Mahé F, Rognes T, Quince C, DeVargas C, Dunthorn M (2014) Swarm: a fast and robust clustering method for amplicon-based studies. Peer J 2:e593
-
(2014)
Peer J
, vol.2
, pp. 593
-
-
Mahé, F.1
Rognes, T.2
Quince, C.3
DeVargas, C.4
Dunthorn, M.5
-
58
-
-
84890626783
-
Hypersaline Environments
-
Bell EM, (ed), CABI, UK, USA:
-
McGenity TJ, Oren A (2012) Hypersaline Environments. In: Bell EM (ed) Life at extremes: environments, organisms and strategies for survival. CABI, UK, USA, pp 402–437
-
(2012)
Life at extremes: environments, organisms and strategies for survival
, pp. 402-437
-
-
McGenity, T.J.1
Oren, A.2
-
59
-
-
77951889917
-
Diversity in a hidden world: potential and limitation of next-generation sequencing for surveys of molecular diversity of eukaryotic microorganisms
-
PID: 20331768
-
Medinger R, Nolte V, Pandey RV, Jost S, Ottenwalder B, Schlotterer C, Boenigk J (2010) Diversity in a hidden world: potential and limitation of next-generation sequencing for surveys of molecular diversity of eukaryotic microorganisms. Mol Ecol 19:32–40
-
(2010)
Mol Ecol
, vol.19
, pp. 32-40
-
-
Medinger, R.1
Nolte, V.2
Pandey, R.V.3
Jost, S.4
Ottenwalder, B.5
Schlotterer, C.6
Boenigk, J.7
-
60
-
-
0035252376
-
Oceanic 18S rDNA sequences from picoplankton reveal unsuspected eukaryotic diversity
-
COI: 1:CAS:528:DC%2BD3MXhtVygtbY%3D, PID: 11214317
-
Moon-van der Staay SY, De Wachter R, Vaulot D (2001) Oceanic 18S rDNA sequences from picoplankton reveal unsuspected eukaryotic diversity. Nature 409:607–610
-
(2001)
Nature
, vol.409
, pp. 607-610
-
-
Moon-van der Staay, S.Y.1
De Wachter, R.2
Vaulot, D.3
-
61
-
-
79954584273
-
Delimiting operational taxonomic units for assessing ciliate environmental diversity using small-subunit rRNA gene sequences
-
Nebel M, Pfabel C, Stock A, Dunthorn M, Stoeck T (2010) Delimiting operational taxonomic units for assessing ciliate environmental diversity using small-subunit rRNA gene sequences. Environ Microbiol Rep 3:154–158
-
(2010)
Environ Microbiol Rep
, vol.3
, pp. 154-158
-
-
Nebel, M.1
Pfabel, C.2
Stock, A.3
Dunthorn, M.4
Stoeck, T.5
-
62
-
-
80855149035
-
JAGUC: a software package for environmental diversity analyses
-
PID: 22084012
-
Nebel ME, Wild S, Holzhauser M, Huttenberger L, Reitzig R, Sperber M, Stoeck T (2011) JAGUC: a software package for environmental diversity analyses. J Bioinform Comput Biol 9:749–773
-
(2011)
J Bioinform Comput Biol
, vol.9
, pp. 749-773
-
-
Nebel, M.E.1
Wild, S.2
Holzhauser, M.3
Huttenberger, L.4
Reitzig, R.5
Sperber, M.6
Stoeck, T.7
-
63
-
-
42949104034
-
Microbial life at high salt concentrations: phylogenetic and metabolic diversity
-
Oren A (2008) Microbial life at high salt concentrations: phylogenetic and metabolic diversity. Saline Systems 4:13
-
(2008)
Saline Systems
, vol.4
, pp. 13
-
-
Oren, A.1
-
64
-
-
1542351577
-
Preliminary and mass culture experiments on a heterotrichous ciliate, Fabrea salina
-
Pandey B, Yeragi S (2004) Preliminary and mass culture experiments on a heterotrichous ciliate, Fabrea salina. Aquacult 232:241–254
-
(2004)
Aquacult
, vol.232
, pp. 241-254
-
-
Pandey, B.1
Yeragi, S.2
-
65
-
-
77953580990
-
Characterization of halotolerant Bicosoecida and Placididea (Stramenopila) that are distinct from marine forms, and the phylogenetic pattern of salinity preferences in heterotrophic stramenopiles
-
COI: 1:CAS:528:DC%2BC3cXntFyit7w%3D, PID: 20132281
-
Park JS, Simpson AGB (2010) Characterization of halotolerant Bicosoecida and Placididea (Stramenopila) that are distinct from marine forms, and the phylogenetic pattern of salinity preferences in heterotrophic stramenopiles. Environ Microbiol 12:1173–1184
-
(2010)
Environ Microbiol
, vol.12
, pp. 1173-1184
-
-
Park, J.S.1
Simpson, A.G.B.2
-
66
-
-
0242491573
-
Active flagellates grazing on prokaryotes in high salinity waters of a solar saltern
-
Park JS, Kim H, Choi DH, Cho BC (2003) Active flagellates grazing on prokaryotes in high salinity waters of a solar saltern. Aquat Microb Ecol 33:173–179
-
(2003)
Aquat Microb Ecol
, vol.33
, pp. 173-179
-
-
Park, J.S.1
Kim, H.2
Choi, D.H.3
Cho, B.C.4
-
67
-
-
34347336591
-
Ultrastructure and phylogenetic placement within Heterolobosea of the previously unclassified, extremely halophilic heterotrophic flagellate Pleurostomum flabellatum (Ruinen 1938)
-
COI: 1:CAS:528:DC%2BD2sXhtVWgtb3I, PID: 17576098
-
Park JS, Simpson AGB, Lee WJ, Cho BC (2007) Ultrastructure and phylogenetic placement within Heterolobosea of the previously unclassified, extremely halophilic heterotrophic flagellate Pleurostomum flabellatum (Ruinen 1938). Protist 158:397–413
-
(2007)
Protist
, vol.158
, pp. 397-413
-
-
Park, J.S.1
Simpson, A.G.B.2
Lee, W.J.3
Cho, B.C.4
-
68
-
-
64049111580
-
Ultrastructure and molecular phlyogeny of two heterolobosean amoebae, Euplaesiobystra hypersalinica gen. et sp. nov. and Tulamoeba peronaphora gen. et sp. nov., isolated from an extremely hypersaline habitat
-
COI: 1:CAS:528:DC%2BD1MXmtVSqsrw%3D, PID: 19121603
-
Park JS, Simpson AGB, Brown S, Cho BC (2009) Ultrastructure and molecular phlyogeny of two heterolobosean amoebae, Euplaesiobystra hypersalinica gen. et sp. nov. and Tulamoeba peronaphora gen. et sp. nov., isolated from an extremely hypersaline habitat. Protist 160:265–283
-
(2009)
Protist
, vol.160
, pp. 265-283
-
-
Park, J.S.1
Simpson, A.G.B.2
Brown, S.3
Cho, B.C.4
-
69
-
-
0030478613
-
Heterotrophic flagellates from coastal marine and hypersaline sediments in Western Australia
-
Patterson DJ, Simpson AGB (1996) Heterotrophic flagellates from coastal marine and hypersaline sediments in Western Australia. Eur J Protistol 32:423–448
-
(1996)
Eur J Protistol
, vol.32
, pp. 423-448
-
-
Patterson, D.J.1
Simpson, A.G.B.2
-
70
-
-
4143135540
-
Trophic ecology of solar salterns
-
Ventosa A, (ed), Springer, Berlin:
-
Pedrós-Alió C (2004) Trophic ecology of solar salterns. In: Ventosa A (ed) Halophilic microorganisms. Springer, Berlin, pp 33–48
-
(2004)
Halophilic microorganisms
, pp. 33-48
-
-
Pedrós-Alió, C.1
-
71
-
-
0020867681
-
The protozoa of a western Australian hypersaline lagoon
-
Post FJ, Borowitzka LJ, Borowitzka MA, Mackay B, Moulton T (1983) The protozoa of a western Australian hypersaline lagoon. Hydrobiologica 105:95–113
-
(1983)
Hydrobiologica
, vol.105
, pp. 95-113
-
-
Post, F.J.1
Borowitzka, L.J.2
Borowitzka, M.A.3
Mackay, B.4
Moulton, T.5
-
73
-
-
0000657188
-
Notizen über Salzflagellaten II. Über die Verbreitung der Salzflagellaten
-
Ruinen J (1938) Notizen über Salzflagellaten II. Über die Verbreitung der Salzflagellaten. Arch f Protistenkd 90:161–177
-
(1938)
Arch f Protistenkd
, vol.90
, pp. 161-177
-
-
Ruinen, J.1
-
74
-
-
12744271909
-
Body doubles
-
PID: 15650721
-
Sáez AG, Lozano E (2005) Body doubles. Nature 433:111
-
(2005)
Nature
, vol.433
, pp. 111
-
-
Sáez, A.G.1
Lozano, E.2
-
75
-
-
84904416444
-
Molecular phylogeny and ontogeny of a new ciliate genus, Paracladotricha salina n. g., g. sp. (Ciliophora, Hypotrichia)
-
COI: 1:CAS:528:DC%2BC2cXhtFajtL3K, PID: 24773314
-
Shao C, Li L, Zhang Q, Song W, Berger H (2014) Molecular phylogeny and ontogeny of a new ciliate genus, Paracladotricha salina n. g., g. sp. (Ciliophora, Hypotrichia). J Eukaryot Microbiol 61:371–380
-
(2014)
J Eukaryot Microbiol
, vol.61
, pp. 371-380
-
-
Shao, C.1
Li, L.2
Zhang, Q.3
Song, W.4
Berger, H.5
-
76
-
-
84155180940
-
Microbial eukaryote life in the new hypersaline deep-sea basin Thetis
-
PID: 22009262
-
Stock A, Breiner HW, Pachiadaki M et al (2012) Microbial eukaryote life in the new hypersaline deep-sea basin Thetis. Extremophiles 16:21–34
-
(2012)
Extremophiles
, vol.16
, pp. 21-34
-
-
Stock, A.1
Breiner, H.W.2
Pachiadaki, M.3
-
77
-
-
32344437178
-
A multiple PCR-primer approach to access the microeukaryotic diversity in environmental samples
-
COI: 1:CAS:528:DC%2BD28XjtlGnurk%3D, PID: 16431157
-
Stoeck T, Hayward B, Taylor GT, Varela R, Epstein SS (2006) A multiple PCR-primer approach to access the microeukaryotic diversity in environmental samples. Protist 157:31–43
-
(2006)
Protist
, vol.157
, pp. 31-43
-
-
Stoeck, T.1
Hayward, B.2
Taylor, G.T.3
Varela, R.4
Epstein, S.S.5
-
78
-
-
77951908579
-
Multiple marker parallel tag environmental DNA sequencing reveals a highly complex eukaryotic community in marine anoxic water
-
COI: 1:CAS:528:DC%2BC3cXksVyrtLg%3D, PID: 20331767
-
Stoeck T, Bass D, Nebel M, Christen R, Jones MD, Breiner HW, Richards TA (2010) Multiple marker parallel tag environmental DNA sequencing reveals a highly complex eukaryotic community in marine anoxic water. Mol Ecol 19:21–31
-
(2010)
Mol Ecol
, vol.19
, pp. 21-31
-
-
Stoeck, T.1
Bass, D.2
Nebel, M.3
Christen, R.4
Jones, M.D.5
Breiner, H.W.6
Richards, T.A.7
-
79
-
-
84892972370
-
A morphogenetic survey on ciliate plankton from a mountain lake pinpoints the necessity of lineage-specific barcode markers in microbial ecology
-
COI: 1:CAS:528:DC%2BC2cXhsF2rsrk%3D, PID: 23848238
-
Stoeck T, Breiner HW, Filker S, Ostermaier V, Kammerlander B, Sonntag B (2014) A morphogenetic survey on ciliate plankton from a mountain lake pinpoints the necessity of lineage-specific barcode markers in microbial ecology. Environ Microbiol 16:430–444
-
(2014)
Environ Microbiol
, vol.16
, pp. 430-444
-
-
Stoeck, T.1
Breiner, H.W.2
Filker, S.3
Ostermaier, V.4
Kammerlander, B.5
Sonntag, B.6
-
80
-
-
84879415770
-
High genetic diversity and novelty in planktonic protists inhabiting inland and coastal high salinity water bodies
-
PID: 23406313
-
Triadó-Margarit X, Casamayor EO (2013) High genetic diversity and novelty in planktonic protists inhabiting inland and coastal high salinity water bodies. FEMS Microbiol Ecol 85:27–36
-
(2013)
FEMS Microbiol Ecol
, vol.85
, pp. 27-36
-
-
Triadó-Margarit, X.1
Casamayor, E.O.2
-
81
-
-
0033826413
-
Why are there so few evolutionary transitions between aquatic and terrestrial ecosystems?
-
Vermeij GJ, Dudely R (2000) Why are there so few evolutionary transitions between aquatic and terrestrial ecosystems? Biol J Linn Soc 70:541–554
-
(2000)
Biol J Linn Soc
, vol.70
, pp. 541-554
-
-
Vermeij, G.J.1
Dudely, R.2
-
82
-
-
33846197478
-
Metabolism and metabolomics of eukaryotes living under extreme conditions
-
COI: 1:CAS:528:DC%2BD2sXmt1Gks7o%3D, PID: 17241903
-
Weber AP, Horst RJ, Barbier GG, Oesterhelt C (2007) Metabolism and metabolomics of eukaryotes living under extreme conditions. Int Rev Cytol 256:1–34
-
(2007)
Int Rev Cytol
, vol.256
, pp. 1-34
-
-
Weber, A.P.1
Horst, R.J.2
Barbier, G.G.3
Oesterhelt, C.4
-
83
-
-
0034554835
-
Comparative analysis of more than 3000 sequences reveals the existence of two pseudoknots in area V4 of eukaryotic small subunit ribosomal RNA
-
COI: 1:CAS:528:DC%2BD3MXmtlOk, PID: 11095680
-
Wuyts J, De Rijk P, Van de Peer Y, Pison G, Rousseeuw P, De Wachter R (2000) Comparative analysis of more than 3000 sequences reveals the existence of two pseudoknots in area V4 of eukaryotic small subunit ribosomal RNA. Nucleic Acids Res 28:4698–4708
-
(2000)
Nucleic Acids Res
, vol.28
, pp. 4698-4708
-
-
Wuyts, J.1
De Rijk, P.2
Van de Peer, Y.3
Pison, G.4
Rousseeuw, P.5
De Wachter, R.6
-
84
-
-
13844317082
-
Mapping of picoeucaryotes in marine ecosystems with quantitative PCR of the 18S rRNA gene
-
COI: 1:CAS:528:DC%2BD2MXhslCmsrk%3D, PID: 16329895
-
Zhu F, Massana R, Not F, Marie D, Vaulot D (2005) Mapping of picoeucaryotes in marine ecosystems with quantitative PCR of the 18S rRNA gene. FEMS Microbiol Ecol 52:79–92
-
(2005)
FEMS Microbiol Ecol
, vol.52
, pp. 79-92
-
-
Zhu, F.1
Massana, R.2
Not, F.3
Marie, D.4
Vaulot, D.5
|