메뉴 건너뛰기




Volumn 19, Issue 2, 2015, Pages 283-295

Deep sequencing uncovers protistan plankton diversity in the Portuguese Ria Formosa solar saltern ponds

Author keywords

Hypersaline; Novel diversity; Protistan plankton; Salt gradient; Solar saltern

Indexed keywords

ALVEOLATA; BIODIVERSITY; CLASSIFICATION; DNA SEQUENCE; FUNGUS; GENETICS; GREEN ALGA; HIGH THROUGHPUT SEQUENCING; PLANKTON; PORTUGAL; SALINITY; SALT TOLERANCE;

EID: 84925543325     PISSN: 14310651     EISSN: 14334909     Source Type: Journal    
DOI: 10.1007/s00792-014-0713-2     Document Type: Article
Times cited : (40)

References (84)
  • 1
    • 33747346997 scopus 로고    scopus 로고
    • Eukaryotic community distribution and its relationship to water physicochemical parameters in an extreme acidic environment, Río Tinto (Southwestern Spain)
    • COI: 1:CAS:528:DC%2BD28XosVKls7g%3D
    • Aguilera A, Manrubia SC, Gómez F, Rodríguez N, Amils R (2006) Eukaryotic community distribution and its relationship to water physicochemical parameters in an extreme acidic environment, Río Tinto (Southwestern Spain). Appl Environ Microb 72:5325–5330
    • (2006) Appl Environ Microb , vol.72 , pp. 5325-5330
    • Aguilera, A.1    Manrubia, S.C.2    Gómez, F.3    Rodríguez, N.4    Amils, R.5
  • 4
    • 68149178616 scopus 로고    scopus 로고
    • A method for studying protistan diversity using massively parallel sequencing of V9 hypervariable regions of small-subunit ribosomal RNA genes
    • PID: 19633714
    • Amaral-Zettler LA, McCliment EA, Ducklow HW, Huse SM (2009) A method for studying protistan diversity using massively parallel sequencing of V9 hypervariable regions of small-subunit ribosomal RNA genes. PLoS One 4:e6372. doi:10.1371/journal.pone.0006372
    • (2009) PLoS One , vol.4 , pp. 6372
    • Amaral-Zettler, L.A.1    McCliment, E.A.2    Ducklow, H.W.3    Huse, S.M.4
  • 6
    • 78650161976 scopus 로고    scopus 로고
    • Quantifying microbial communities with 454 pyrosequencing: does read abundance count?
    • COI: 1:CAS:528:DC%2BC3MXhtlagsb0%3D, PID: 21050295
    • Amend AS, Seifert KA, Bruns TD (2010) Quantifying microbial communities with 454 pyrosequencing: does read abundance count? Mol Ecol 19:5555–5565
    • (2010) Mol Ecol , vol.19 , pp. 5555-5565
    • Amend, A.S.1    Seifert, K.A.2    Bruns, T.D.3
  • 7
    • 85166916238 scopus 로고    scopus 로고
    • Gephi: an open source software for exploring and manipulating networks
    • Bastian M, Heymann S, Jacomy M (2009) Gephi: an open source software for exploring and manipulating networks. ICWSM 8:361–362
    • (2009) ICWSM , vol.8 , pp. 361-362
    • Bastian, M.1    Heymann, S.2    Jacomy, M.3
  • 8
    • 79551476785 scopus 로고    scopus 로고
    • Depicting more accurate pictures of protistan community complexity using pyrosequencing of hypervariable SSU rRNA gene regions
    • COI: 1:CAS:528:DC%2BC3MXjsVKns70%3D
    • Behnke A, Engel M, Christen R, Nebel M, Klein R, Stoeck T (2011) Depicting more accurate pictures of protistan community complexity using pyrosequencing of hypervariable SSU rRNA gene regions. Env Microbiol 13:340–349
    • (2011) Env Microbiol , vol.13 , pp. 340-349
    • Behnke, A.1    Engel, M.2    Christen, R.3    Nebel, M.4    Klein, R.5    Stoeck, T.6
  • 9
    • 33750618212 scopus 로고    scopus 로고
    • A molecular time-scale for eukaryote evolution recalibrated with the continuous microfossil record
    • COI: 1:CAS:528:DC%2BD28Xps1Gjt78%3D
    • Berney C, Pawlowski J (2006) A molecular time-scale for eukaryote evolution recalibrated with the continuous microfossil record. Proc Roy Soc B Biol Sci 273:1867–1872
    • (2006) Proc Roy Soc B Biol Sci , vol.273 , pp. 1867-1872
    • Berney, C.1    Pawlowski, J.2
  • 10
    • 33847041452 scopus 로고    scopus 로고
    • Cryptic species as a window on diversity and conservation
    • PID: 17129636
    • Bickford D, Lohman DJ, Sodhi NS et al (2007) Cryptic species as a window on diversity and conservation. Trends Ecol Evol 22:148–155
    • (2007) Trends Ecol Evol , vol.22 , pp. 148-155
    • Bickford, D.1    Lohman, D.J.2    Sodhi, N.S.3
  • 11
    • 84860353306 scopus 로고    scopus 로고
    • Fast, accurate error-correction of amplicon pyrosequences using Acacia
    • COI: 1:CAS:528:DC%2BC38Xmt1WmtrY%3D, PID: 22543370
    • Bragg L, Stone G, Imelfort M, Hugenholtz P, Tyson GW (2012) Fast, accurate error-correction of amplicon pyrosequences using Acacia. Nat Methods 9:425–426
    • (2012) Nat Methods , vol.9 , pp. 425-426
    • Bragg, L.1    Stone, G.2    Imelfort, M.3    Hugenholtz, P.4    Tyson, G.W.5
  • 12
    • 77956094384 scopus 로고    scopus 로고
    • Freshwater Perkinsea and marine-freshwater colonizations revealed by pyrosequencing and phylogeny of environmental rDNA
    • PID: 20393574
    • Bråte J, Logares R, Berney C, Ree DK, Klaveness D, Jakobsen KS, Shalchian-Tabrizi K (2010) Freshwater Perkinsea and marine-freshwater colonizations revealed by pyrosequencing and phylogeny of environmental rDNA. ISME J 4:1144–1153
    • (2010) ISME J , vol.4 , pp. 1144-1153
    • Bråte, J.1    Logares, R.2    Berney, C.3    Ree, D.K.4    Klaveness, D.5    Jakobsen, K.S.6    Shalchian-Tabrizi, K.7
  • 13
    • 77952243141 scopus 로고    scopus 로고
    • QIIME allows analysis of high-throughput community sequencing data
    • COI: 1:CAS:528:DC%2BC3cXksFalurg%3D, PID: 20383131
    • Caporaso JG, Kuczynski J, Stombaugh J et al (2010) QIIME allows analysis of high-throughput community sequencing data. Nat Methods 7:335
    • (2010) Nat Methods , vol.7 , pp. 335
    • Caporaso, J.G.1    Kuczynski, J.2    Stombaugh, J.3
  • 15
    • 70149117756 scopus 로고    scopus 로고
    • Defining DNA-based operational taxonomic units for microbial-eukaryote ecology
    • COI: 1:CAS:528:DC%2BD1MXhsVSmtb7K, PID: 19592529
    • Caron DA, Countway PD, Savai P et al (2009) Defining DNA-based operational taxonomic units for microbial-eukaryote ecology. Appl Environ Microbiol 75:5797–5808
    • (2009) Appl Environ Microbiol , vol.75 , pp. 5797-5808
    • Caron, D.A.1    Countway, P.D.2    Savai, P.3
  • 16
    • 0035984122 scopus 로고    scopus 로고
    • Changes in archaeal, bacterial and eukaryal assemblages along a salinity gradient by comparison of genetic fingerprinting methods in a multipond solar saltern
    • PID: 12071979
    • Casamayor EO, Massana R, Benlloch S et al (2002) Changes in archaeal, bacterial and eukaryal assemblages along a salinity gradient by comparison of genetic fingerprinting methods in a multipond solar saltern. Environ Microbiol 4:338–348
    • (2002) Environ Microbiol , vol.4 , pp. 338-348
    • Casamayor, E.O.1    Massana, R.2    Benlloch, S.3
  • 17
    • 84881552602 scopus 로고    scopus 로고
    • Microbial biodiversity in saline shallow lakes of the Monegros Desert, Spain
    • COI: 1:CAS:528:DC%2BC3sXhsVemsrrI, PID: 23621854
    • Casamayor EO, Triadó-Margarit X, Castañeda C (2013) Microbial biodiversity in saline shallow lakes of the Monegros Desert, Spain. FEMS Microbiol Ecol 85:503–518
    • (2013) FEMS Microbiol Ecol , vol.85 , pp. 503-518
    • Casamayor, E.O.1    Triadó-Margarit, X.2    Castañeda, C.3
  • 18
    • 54249105870 scopus 로고    scopus 로고
    • Morphology and molecular phylogeny of Trimyema koreanum n. sp., a ciliate from the hypersaline water of a solar saltern
    • PID: 19017062
    • Cho BC, Park JS, Xu K, Choi JK (2008) Morphology and molecular phylogeny of Trimyema koreanum n. sp., a ciliate from the hypersaline water of a solar saltern. J Eukaryot Microbiol 55:417–426
    • (2008) J Eukaryot Microbiol , vol.55 , pp. 417-426
    • Cho, B.C.1    Park, J.S.2    Xu, K.3    Choi, J.K.4
  • 19
    • 43349094507 scopus 로고    scopus 로고
    • The igraph software package for complex network research
    • Csárdi G, Nepusz T (2006) The igraph software package for complex network research. Inter J Complex Syst 1695
    • (2006) Inter J Complex Syst , pp. 1695
    • Csárdi, G.1    Nepusz, T.2
  • 20
    • 84858702221 scopus 로고    scopus 로고
    • Comparing the hyper-variable V4 and V9 regions of the small subunit rDNA for assessment of ciliate environmental diversity
    • COI: 1:CAS:528:DC%2BC38Xms1yntLo%3D, PID: 22236102
    • Dunthorn M, Klier J, Bunge J, Stoeck T (2012) Comparing the hyper-variable V4 and V9 regions of the small subunit rDNA for assessment of ciliate environmental diversity. J Eukaryot Microbiol 59:185–187
    • (2012) J Eukaryot Microbiol , vol.59 , pp. 185-187
    • Dunthorn, M.1    Klier, J.2    Bunge, J.3    Stoeck, T.4
  • 21
    • 84897866461 scopus 로고    scopus 로고
    • Placing environmental next-generation sequencing amplicons from microbial eukaryotes into a phylogenetic context
    • COI: 1:CAS:528:DC%2BC2cXks12js74%3D, PID: 24473288
    • Dunthorn M, Otto J, Berger SA et al (2014a) Placing environmental next-generation sequencing amplicons from microbial eukaryotes into a phylogenetic context. Mol Biol Evol 31:993–1009
    • (2014) Mol Biol Evol , vol.31 , pp. 993-1009
    • Dunthorn, M.1    Otto, J.2    Berger, S.A.3
  • 23
    • 77957244650 scopus 로고    scopus 로고
    • Search and clustering orders of magnitude faster than BLAST
    • COI: 1:CAS:528:DC%2BC3cXht1WhtbzM, PID: 20709691
    • Edgar RC (2010) Search and clustering orders of magnitude faster than BLAST. Bioinformatics 26:2460–2461
    • (2010) Bioinformatics , vol.26 , pp. 2460-2461
    • Edgar, R.C.1
  • 25
    • 58149197584 scopus 로고    scopus 로고
    • Protistan community patterns within the brine and halocline of deep hypersaline anoxic basins in the eastern Mediterranean Sea
    • PID: 19057844
    • Edgcomb V, Orsi W, Leslin C et al (2009) Protistan community patterns within the brine and halocline of deep hypersaline anoxic basins in the eastern Mediterranean Sea. Extremophiles 13:151–167
    • (2009) Extremophiles , vol.13 , pp. 151-167
    • Edgcomb, V.1    Orsi, W.2    Leslin, C.3
  • 26
    • 32444437234 scopus 로고    scopus 로고
    • Composition and distribution of planktonic ciliates from ponds of different salinity in the solar saltwork of Sfax, Tunisia
    • Elloumi J, Carrias J-F, Ayadi H, Sime-Ngando T, Boukhris M, Bouain A (2006) Composition and distribution of planktonic ciliates from ponds of different salinity in the solar saltwork of Sfax, Tunisia. Estuar Coast Shelf Sci 67:21–29
    • (2006) Estuar Coast Shelf Sci , vol.67 , pp. 21-29
    • Elloumi, J.1    Carrias, J.-F.2    Ayadi, H.3    Sime-Ngando, T.4    Boukhris, M.5    Bouain, A.6
  • 28
    • 67649579815 scopus 로고    scopus 로고
    • Abundance and biomass of prokaryotic and eukaryotic microorganisms coupled with environmental factors in an arid multi-pond solar saltern (Sfax, Tunisia)
    • Elloumi J, Guermazi W, Ayadi H, Bouain A, Aleya L (2009b) Abundance and biomass of prokaryotic and eukaryotic microorganisms coupled with environmental factors in an arid multi-pond solar saltern (Sfax, Tunisia). J Mar Biol Assoc UK 89:243–253
    • (2009) J Mar Biol Assoc UK , vol.89 , pp. 243-253
    • Elloumi, J.1    Guermazi, W.2    Ayadi, H.3    Bouain, A.4    Aleya, L.5
  • 29
    • 77951498638 scopus 로고    scopus 로고
    • Experimental factors affecting PCR-based estimates of microbial species richness and evenness
    • COI: 1:CAS:528:DC%2BC3cXkvFemtbo%3D, PID: 20090784
    • Engelbrektson A, Kunin V, Wrighton KC, Zvenigorodsky N, Chen F, Ochman H et al (2010) Experimental factors affecting PCR-based estimates of microbial species richness and evenness. ISME J 4:642–647
    • (2010) ISME J , vol.4 , pp. 642-647
    • Engelbrektson, A.1    Kunin, V.2    Wrighton, K.C.3    Zvenigorodsky, N.4    Chen, F.5    Ochman, H.6
  • 30
    • 38649124950 scopus 로고    scopus 로고
    • Missing” protists: a molecular prospective
    • Epstein S, López-García P (2008) “Missing” protists: a molecular prospective. Biodivers Conserv 17:261–276
    • (2008) Biodivers Conserv , vol.17 , pp. 261-276
    • Epstein, S.1    López-García, P.2
  • 31
    • 3142748599 scopus 로고    scopus 로고
    • Diversity of planktonic photoautotrophic microorganisms along a salinity gradient as depicted by microscopy, flow cytometry, pigment analysis and DNA-based methods
    • COI: 1:CAS:528:DC%2BD2cXlsl2hsrw%3D, PID: 19712421
    • Estrada M, Henriksen P, Gasol JM, Casamayor EO, Pedrós-Alió C (2004) Diversity of planktonic photoautotrophic microorganisms along a salinity gradient as depicted by microscopy, flow cytometry, pigment analysis and DNA-based methods. FEMS Microbiol Ecol 49:281–293
    • (2004) FEMS Microbiol Ecol , vol.49 , pp. 281-293
    • Estrada, M.1    Henriksen, P.2    Gasol, J.M.3    Casamayor, E.O.4    Pedrós-Alió, C.5
  • 32
    • 84898056889 scopus 로고    scopus 로고
    • Morphology, ontogenesis and molecular phylogeny of Platynematum salinarum nov. spec., a new scuticociliate (Ciliophora, Scuticociliatia) from a solar saltern
    • PID: 24370338
    • Foissner W, Jung JH, Filker S, Rudolph J, Stoeck T (2014a) Morphology, ontogenesis and molecular phylogeny of Platynematum salinarum nov. spec., a new scuticociliate (Ciliophora, Scuticociliatia) from a solar saltern. Eur J Protistol 50:174–184
    • (2014) Eur J Protistol , vol.50 , pp. 174-184
    • Foissner, W.1    Jung, J.H.2    Filker, S.3    Rudolph, J.4    Stoeck, T.5
  • 33
    • 84893641195 scopus 로고    scopus 로고
    • Schmidingerothrix salinarum nov. spec. is the molecular sister of the large oxytrichid clade (Ciliophora, Hypotricha)
    • COI: 1:CAS:528:DC%2BC2cXhsVChtLY%3D, PID: 24147743
    • Foissner W, Filker S, Stoeck T (2014b) Schmidingerothrix salinarum nov. spec. is the molecular sister of the large oxytrichid clade (Ciliophora, Hypotricha). J Eukaryot Microbiol 61:61–74
    • (2014) J Eukaryot Microbiol , vol.61 , pp. 61-74
    • Foissner, W.1    Filker, S.2    Stoeck, T.3
  • 34
    • 84869128525 scopus 로고    scopus 로고
    • Meta-analyses of environmental sequence data identify anoxia and salinity as parameters shaping ciliate communities
    • Forster D, Behnke A, Stoeck T (2012) Meta-analyses of environmental sequence data identify anoxia and salinity as parameters shaping ciliate communities. Syst Biodivers 10:277–288
    • (2012) Syst Biodivers , vol.10 , pp. 277-288
    • Forster, D.1    Behnke, A.2    Stoeck, T.3
  • 35
    • 0030464460 scopus 로고    scopus 로고
    • SEAVIEW and PHYLO_WIN: two graphic tools for sequence alignment and molecular phylogeny
    • COI: 1:CAS:528:DyaK2sXhtlWktLw%3D, PID: 9021275
    • Galtier N, Gouy M, Gautier C (1996) SEAVIEW and PHYLO_WIN: two graphic tools for sequence alignment and molecular phylogeny. Comput Appl Biosci 12:543–548
    • (1996) Comput Appl Biosci , vol.12 , pp. 543-548
    • Galtier, N.1    Gouy, M.2    Gautier, C.3
  • 36
    • 0023958997 scopus 로고
    • Phylogenetic group-specific oligodeoxynucleotide probes for identification of single microbial cells
    • COI: 1:CAS:528:DyaL1cXktF2lsbY%3D, PID: 2448289
    • Giovannoni SJ, DeLong EF, Olsen GJ, Pace NR (1988) Phylogenetic group-specific oligodeoxynucleotide probes for identification of single microbial cells. J Bacteriol 170:720–726
    • (1988) J Bacteriol , vol.170 , pp. 720-726
    • Giovannoni, S.J.1    DeLong, E.F.2    Olsen, G.J.3    Pace, N.R.4
  • 39
    • 76849112868 scopus 로고    scopus 로고
    • Molecular phylogeny of euglyphid testate amoebae (Cercozoa: Euglyphida) suggests transitions between marine supralittoral and freshwater/terrestrial environments are infrequent
    • COI: 1:CAS:528:DC%2BC3cXit1Ggu7c%3D, PID: 20004728
    • Heger TJ, Mitchell EAD, Todorov M, Golemansky V, Lara E, Leander BS, Pawlowski J (2010) Molecular phylogeny of euglyphid testate amoebae (Cercozoa: Euglyphida) suggests transitions between marine supralittoral and freshwater/terrestrial environments are infrequent. Mol Phylogenet Evol 55:113–122
    • (2010) Mol Phylogenet Evol , vol.55 , pp. 113-122
    • Heger, T.J.1    Mitchell, E.A.D.2    Todorov, M.3    Golemansky, V.4    Lara, E.5    Leander, B.S.6    Pawlowski, J.7
  • 41
    • 33847281506 scopus 로고    scopus 로고
    • Soil fungal communities underneath willow canopies on a primary successional glacier forefront: rDNA sequence results can be affected by primer selection and chimeric data
    • COI: 1:CAS:528:DC%2BD2sXisVKksbg%3D
    • Jumpponen A (2007) Soil fungal communities underneath willow canopies on a primary successional glacier forefront: rDNA sequence results can be affected by primer selection and chimeric data. Microbial Ecol 53:233–246
    • (2007) Microbial Ecol , vol.53 , pp. 233-246
    • Jumpponen, A.1
  • 42
    • 84866109504 scopus 로고    scopus 로고
    • Hypervariable regions (V1–V9) of the dinoflagellate 18S rRNA using a large dataset for marker considerations
    • COI: 1:CAS:528:DC%2BC38XhtleiurrM
    • Ki JS (2012) Hypervariable regions (V1–V9) of the dinoflagellate 18S rRNA using a large dataset for marker considerations. J Appl Phycol 24:1035–1043
    • (2012) J Appl Phycol , vol.24 , pp. 1035-1043
    • Ki, J.S.1
  • 44
    • 3442882463 scopus 로고    scopus 로고
    • A new period for the geologic time scale
    • COI: 1:CAS:528:DC%2BD2cXmt1SjsL8%3D, PID: 15286353
    • Knoll AH, Walter MR, Narbonne GM, Christi-Blick N (2004) A new period for the geologic time scale. Science 305:621–622
    • (2004) Science , vol.305 , pp. 621-622
    • Knoll, A.H.1    Walter, M.R.2    Narbonne, G.M.3    Christi-Blick, N.4
  • 45
    • 73349110099 scopus 로고    scopus 로고
    • Wrinkles in the rare biosphere: pyrosequencing errors lead to artificial inflation of diversity estimates
    • COI: 1:CAS:528:DC%2BC3cXhvFaisb4%3D, PID: 19725865
    • Kunin V, Engelbrektson A, Ochman H, Hugenholtz P (2010) Wrinkles in the rare biosphere: pyrosequencing errors lead to artificial inflation of diversity estimates. Environ Microbiol 12:118–123
    • (2010) Environ Microbiol , vol.12 , pp. 118-123
    • Kunin, V.1    Engelbrektson, A.2    Ochman, H.3    Hugenholtz, P.4
  • 46
    • 0016139829 scopus 로고
    • Salt-dependent properties of proteins from extremely halophilic bacteria
    • COI: 1:CAS:528:DyaE2MXht1ehsA%3D%3D, PID: 4607500
    • Lanyi JK (1974) Salt-dependent properties of proteins from extremely halophilic bacteria. Bacteriol Rev 38:272–290
    • (1974) Bacteriol Rev , vol.38 , pp. 272-290
    • Lanyi, J.K.1
  • 47
    • 35948999735 scopus 로고    scopus 로고
    • Cultivation-independent analysis reveals a shift in ciliate 18S rRNA gene diversity in a polycyclic aromatic hydrocarbon-polluted soil
    • COI: 1:CAS:528:DC%2BD2sXhsValtr%2FP, PID: 17949434
    • Lara E, Berney C, Harms H, Chatzinotas A (2007) Cultivation-independent analysis reveals a shift in ciliate 18S rRNA gene diversity in a polycyclic aromatic hydrocarbon-polluted soil. FEMS Microbiol Ecol 62:365–373
    • (2007) FEMS Microbiol Ecol , vol.62 , pp. 365-373
    • Lara, E.1    Berney, C.2    Harms, H.3    Chatzinotas, A.4
  • 48
    • 0033168076 scopus 로고    scopus 로고
    • Causes and consequences of recent freshwater invasions by saltwater animals
    • Lee CE, Bell MA (1999) Causes and consequences of recent freshwater invasions by saltwater animals. Trends Ecol Evol 14:282–288
    • (1999) Trends Ecol Evol , vol.14 , pp. 282-288
    • Lee, C.E.1    Bell, M.A.2
  • 49
    • 70649083335 scopus 로고    scopus 로고
    • Community structure and seasonal dynamics of planktonic ciliates along salinity gradients
    • PID: 19525098
    • Lei Y, Xu K, Choi JK, Hong HP, Wickham SA (2009) Community structure and seasonal dynamics of planktonic ciliates along salinity gradients. Eur J Protistol 45:305–319
    • (2009) Eur J Protistol , vol.45 , pp. 305-319
    • Lei, Y.1    Xu, K.2    Choi, J.K.3    Hong, H.P.4    Wickham, S.A.5
  • 51
    • 74549165386 scopus 로고    scopus 로고
    • Infrequent transitions between saline and fresh waters in one of the most abundant microbial lineages (SAR11)
    • COI: 1:CAS:528:DC%2BC3cXntlGntA%3D%3D, PID: 19808864
    • Logares R, Bråte J, Heinrich F, Shalchian-Tabrizi K, Bertilsson S (2010) Infrequent transitions between saline and fresh waters in one of the most abundant microbial lineages (SAR11). Mol Biol Evol 27:347–357
    • (2010) Mol Biol Evol , vol.27 , pp. 347-357
    • Logares, R.1    Bråte, J.2    Heinrich, F.3    Shalchian-Tabrizi, K.4    Bertilsson, S.5
  • 52
    • 84867740787 scopus 로고    scopus 로고
    • Diversity patterns and activity of uncultured marine heterotrophic flagellates unveiled with pyrosequencing
    • COI: 1:CAS:528:DC%2BC38Xhtlynt7vO, PID: 22534609
    • Logares R, Audic S, Santini S, Pernice MC, de Vargas C, Massana R (2012) Diversity patterns and activity of uncultured marine heterotrophic flagellates unveiled with pyrosequencing. ISME J 6:1823–1833
    • (2012) ISME J , vol.6 , pp. 1823-1833
    • Logares, R.1    Audic, S.2    Santini, S.3    Pernice, M.C.4    de Vargas, C.5    Massana, R.6
  • 53
    • 0034933580 scopus 로고    scopus 로고
    • Diversity of free-living prokaryotes from a deep-sea site at the Antarctic Polar Front Fems microbiology
    • López-Garcia P, Lopez-Lopez A, Moreira D, Rodriguez-Valera F (2001) Diversity of free-living prokaryotes from a deep-sea site at the Antarctic Polar Front Fems microbiology. Ecology 36:193–202
    • (2001) Ecology , vol.36 , pp. 193-202
    • López-Garcia, P.1    Lopez-Lopez, A.2    Moreira, D.3    Rodriguez-Valera, F.4
  • 54
    • 34547433545 scopus 로고    scopus 로고
    • Global patterns in bacterial diversity
    • COI: 1:CAS:528:DC%2BD2sXnvFOms7c%3D, PID: 17592124
    • Lozupone C, Knight R (2007) Global patterns in bacterial diversity. Proc Natl Acad Sci USA 104:11436–11440
    • (2007) Proc Natl Acad Sci USA , vol.104 , pp. 11436-11440
    • Lozupone, C.1    Knight, R.2
  • 55
    • 84867742872 scopus 로고    scopus 로고
    • Targeted recovery of novel phylogenetic diversity from next-generation sequence data
    • COI: 1:CAS:528:DC%2BC38XhsFers7nO, PID: 22791239
    • Lynch MD, Bartram AK, Neufeld JD (2012) Targeted recovery of novel phylogenetic diversity from next-generation sequence data. ISME J 6:2067–2077
    • (2012) ISME J , vol.6 , pp. 2067-2077
    • Lynch, M.D.1    Bartram, A.K.2    Neufeld, J.D.3
  • 57
    • 84907710189 scopus 로고    scopus 로고
    • Swarm: a fast and robust clustering method for amplicon-based studies
    • PID: 25276506
    • Mahé F, Rognes T, Quince C, DeVargas C, Dunthorn M (2014) Swarm: a fast and robust clustering method for amplicon-based studies. Peer J 2:e593
    • (2014) Peer J , vol.2 , pp. 593
    • Mahé, F.1    Rognes, T.2    Quince, C.3    DeVargas, C.4    Dunthorn, M.5
  • 59
    • 77951889917 scopus 로고    scopus 로고
    • Diversity in a hidden world: potential and limitation of next-generation sequencing for surveys of molecular diversity of eukaryotic microorganisms
    • PID: 20331768
    • Medinger R, Nolte V, Pandey RV, Jost S, Ottenwalder B, Schlotterer C, Boenigk J (2010) Diversity in a hidden world: potential and limitation of next-generation sequencing for surveys of molecular diversity of eukaryotic microorganisms. Mol Ecol 19:32–40
    • (2010) Mol Ecol , vol.19 , pp. 32-40
    • Medinger, R.1    Nolte, V.2    Pandey, R.V.3    Jost, S.4    Ottenwalder, B.5    Schlotterer, C.6    Boenigk, J.7
  • 60
    • 0035252376 scopus 로고    scopus 로고
    • Oceanic 18S rDNA sequences from picoplankton reveal unsuspected eukaryotic diversity
    • COI: 1:CAS:528:DC%2BD3MXhtVygtbY%3D, PID: 11214317
    • Moon-van der Staay SY, De Wachter R, Vaulot D (2001) Oceanic 18S rDNA sequences from picoplankton reveal unsuspected eukaryotic diversity. Nature 409:607–610
    • (2001) Nature , vol.409 , pp. 607-610
    • Moon-van der Staay, S.Y.1    De Wachter, R.2    Vaulot, D.3
  • 61
    • 79954584273 scopus 로고    scopus 로고
    • Delimiting operational taxonomic units for assessing ciliate environmental diversity using small-subunit rRNA gene sequences
    • Nebel M, Pfabel C, Stock A, Dunthorn M, Stoeck T (2010) Delimiting operational taxonomic units for assessing ciliate environmental diversity using small-subunit rRNA gene sequences. Environ Microbiol Rep 3:154–158
    • (2010) Environ Microbiol Rep , vol.3 , pp. 154-158
    • Nebel, M.1    Pfabel, C.2    Stock, A.3    Dunthorn, M.4    Stoeck, T.5
  • 63
    • 42949104034 scopus 로고    scopus 로고
    • Microbial life at high salt concentrations: phylogenetic and metabolic diversity
    • Oren A (2008) Microbial life at high salt concentrations: phylogenetic and metabolic diversity. Saline Systems 4:13
    • (2008) Saline Systems , vol.4 , pp. 13
    • Oren, A.1
  • 64
    • 1542351577 scopus 로고    scopus 로고
    • Preliminary and mass culture experiments on a heterotrichous ciliate, Fabrea salina
    • Pandey B, Yeragi S (2004) Preliminary and mass culture experiments on a heterotrichous ciliate, Fabrea salina. Aquacult 232:241–254
    • (2004) Aquacult , vol.232 , pp. 241-254
    • Pandey, B.1    Yeragi, S.2
  • 65
    • 77953580990 scopus 로고    scopus 로고
    • Characterization of halotolerant Bicosoecida and Placididea (Stramenopila) that are distinct from marine forms, and the phylogenetic pattern of salinity preferences in heterotrophic stramenopiles
    • COI: 1:CAS:528:DC%2BC3cXntFyit7w%3D, PID: 20132281
    • Park JS, Simpson AGB (2010) Characterization of halotolerant Bicosoecida and Placididea (Stramenopila) that are distinct from marine forms, and the phylogenetic pattern of salinity preferences in heterotrophic stramenopiles. Environ Microbiol 12:1173–1184
    • (2010) Environ Microbiol , vol.12 , pp. 1173-1184
    • Park, J.S.1    Simpson, A.G.B.2
  • 66
    • 0242491573 scopus 로고    scopus 로고
    • Active flagellates grazing on prokaryotes in high salinity waters of a solar saltern
    • Park JS, Kim H, Choi DH, Cho BC (2003) Active flagellates grazing on prokaryotes in high salinity waters of a solar saltern. Aquat Microb Ecol 33:173–179
    • (2003) Aquat Microb Ecol , vol.33 , pp. 173-179
    • Park, J.S.1    Kim, H.2    Choi, D.H.3    Cho, B.C.4
  • 67
    • 34347336591 scopus 로고    scopus 로고
    • Ultrastructure and phylogenetic placement within Heterolobosea of the previously unclassified, extremely halophilic heterotrophic flagellate Pleurostomum flabellatum (Ruinen 1938)
    • COI: 1:CAS:528:DC%2BD2sXhtVWgtb3I, PID: 17576098
    • Park JS, Simpson AGB, Lee WJ, Cho BC (2007) Ultrastructure and phylogenetic placement within Heterolobosea of the previously unclassified, extremely halophilic heterotrophic flagellate Pleurostomum flabellatum (Ruinen 1938). Protist 158:397–413
    • (2007) Protist , vol.158 , pp. 397-413
    • Park, J.S.1    Simpson, A.G.B.2    Lee, W.J.3    Cho, B.C.4
  • 68
    • 64049111580 scopus 로고    scopus 로고
    • Ultrastructure and molecular phlyogeny of two heterolobosean amoebae, Euplaesiobystra hypersalinica gen. et sp. nov. and Tulamoeba peronaphora gen. et sp. nov., isolated from an extremely hypersaline habitat
    • COI: 1:CAS:528:DC%2BD1MXmtVSqsrw%3D, PID: 19121603
    • Park JS, Simpson AGB, Brown S, Cho BC (2009) Ultrastructure and molecular phlyogeny of two heterolobosean amoebae, Euplaesiobystra hypersalinica gen. et sp. nov. and Tulamoeba peronaphora gen. et sp. nov., isolated from an extremely hypersaline habitat. Protist 160:265–283
    • (2009) Protist , vol.160 , pp. 265-283
    • Park, J.S.1    Simpson, A.G.B.2    Brown, S.3    Cho, B.C.4
  • 69
    • 0030478613 scopus 로고    scopus 로고
    • Heterotrophic flagellates from coastal marine and hypersaline sediments in Western Australia
    • Patterson DJ, Simpson AGB (1996) Heterotrophic flagellates from coastal marine and hypersaline sediments in Western Australia. Eur J Protistol 32:423–448
    • (1996) Eur J Protistol , vol.32 , pp. 423-448
    • Patterson, D.J.1    Simpson, A.G.B.2
  • 70
    • 4143135540 scopus 로고    scopus 로고
    • Trophic ecology of solar salterns
    • Ventosa A, (ed), Springer, Berlin:
    • Pedrós-Alió C (2004) Trophic ecology of solar salterns. In: Ventosa A (ed) Halophilic microorganisms. Springer, Berlin, pp 33–48
    • (2004) Halophilic microorganisms , pp. 33-48
    • Pedrós-Alió, C.1
  • 73
    • 0000657188 scopus 로고
    • Notizen über Salzflagellaten II. Über die Verbreitung der Salzflagellaten
    • Ruinen J (1938) Notizen über Salzflagellaten II. Über die Verbreitung der Salzflagellaten. Arch f Protistenkd 90:161–177
    • (1938) Arch f Protistenkd , vol.90 , pp. 161-177
    • Ruinen, J.1
  • 74
    • 12744271909 scopus 로고    scopus 로고
    • Body doubles
    • PID: 15650721
    • Sáez AG, Lozano E (2005) Body doubles. Nature 433:111
    • (2005) Nature , vol.433 , pp. 111
    • Sáez, A.G.1    Lozano, E.2
  • 75
    • 84904416444 scopus 로고    scopus 로고
    • Molecular phylogeny and ontogeny of a new ciliate genus, Paracladotricha salina n. g., g. sp. (Ciliophora, Hypotrichia)
    • COI: 1:CAS:528:DC%2BC2cXhtFajtL3K, PID: 24773314
    • Shao C, Li L, Zhang Q, Song W, Berger H (2014) Molecular phylogeny and ontogeny of a new ciliate genus, Paracladotricha salina n. g., g. sp. (Ciliophora, Hypotrichia). J Eukaryot Microbiol 61:371–380
    • (2014) J Eukaryot Microbiol , vol.61 , pp. 371-380
    • Shao, C.1    Li, L.2    Zhang, Q.3    Song, W.4    Berger, H.5
  • 76
    • 84155180940 scopus 로고    scopus 로고
    • Microbial eukaryote life in the new hypersaline deep-sea basin Thetis
    • PID: 22009262
    • Stock A, Breiner HW, Pachiadaki M et al (2012) Microbial eukaryote life in the new hypersaline deep-sea basin Thetis. Extremophiles 16:21–34
    • (2012) Extremophiles , vol.16 , pp. 21-34
    • Stock, A.1    Breiner, H.W.2    Pachiadaki, M.3
  • 77
    • 32344437178 scopus 로고    scopus 로고
    • A multiple PCR-primer approach to access the microeukaryotic diversity in environmental samples
    • COI: 1:CAS:528:DC%2BD28XjtlGnurk%3D, PID: 16431157
    • Stoeck T, Hayward B, Taylor GT, Varela R, Epstein SS (2006) A multiple PCR-primer approach to access the microeukaryotic diversity in environmental samples. Protist 157:31–43
    • (2006) Protist , vol.157 , pp. 31-43
    • Stoeck, T.1    Hayward, B.2    Taylor, G.T.3    Varela, R.4    Epstein, S.S.5
  • 78
    • 77951908579 scopus 로고    scopus 로고
    • Multiple marker parallel tag environmental DNA sequencing reveals a highly complex eukaryotic community in marine anoxic water
    • COI: 1:CAS:528:DC%2BC3cXksVyrtLg%3D, PID: 20331767
    • Stoeck T, Bass D, Nebel M, Christen R, Jones MD, Breiner HW, Richards TA (2010) Multiple marker parallel tag environmental DNA sequencing reveals a highly complex eukaryotic community in marine anoxic water. Mol Ecol 19:21–31
    • (2010) Mol Ecol , vol.19 , pp. 21-31
    • Stoeck, T.1    Bass, D.2    Nebel, M.3    Christen, R.4    Jones, M.D.5    Breiner, H.W.6    Richards, T.A.7
  • 79
    • 84892972370 scopus 로고    scopus 로고
    • A morphogenetic survey on ciliate plankton from a mountain lake pinpoints the necessity of lineage-specific barcode markers in microbial ecology
    • COI: 1:CAS:528:DC%2BC2cXhsF2rsrk%3D, PID: 23848238
    • Stoeck T, Breiner HW, Filker S, Ostermaier V, Kammerlander B, Sonntag B (2014) A morphogenetic survey on ciliate plankton from a mountain lake pinpoints the necessity of lineage-specific barcode markers in microbial ecology. Environ Microbiol 16:430–444
    • (2014) Environ Microbiol , vol.16 , pp. 430-444
    • Stoeck, T.1    Breiner, H.W.2    Filker, S.3    Ostermaier, V.4    Kammerlander, B.5    Sonntag, B.6
  • 80
    • 84879415770 scopus 로고    scopus 로고
    • High genetic diversity and novelty in planktonic protists inhabiting inland and coastal high salinity water bodies
    • PID: 23406313
    • Triadó-Margarit X, Casamayor EO (2013) High genetic diversity and novelty in planktonic protists inhabiting inland and coastal high salinity water bodies. FEMS Microbiol Ecol 85:27–36
    • (2013) FEMS Microbiol Ecol , vol.85 , pp. 27-36
    • Triadó-Margarit, X.1    Casamayor, E.O.2
  • 81
    • 0033826413 scopus 로고    scopus 로고
    • Why are there so few evolutionary transitions between aquatic and terrestrial ecosystems?
    • Vermeij GJ, Dudely R (2000) Why are there so few evolutionary transitions between aquatic and terrestrial ecosystems? Biol J Linn Soc 70:541–554
    • (2000) Biol J Linn Soc , vol.70 , pp. 541-554
    • Vermeij, G.J.1    Dudely, R.2
  • 82
    • 33846197478 scopus 로고    scopus 로고
    • Metabolism and metabolomics of eukaryotes living under extreme conditions
    • COI: 1:CAS:528:DC%2BD2sXmt1Gks7o%3D, PID: 17241903
    • Weber AP, Horst RJ, Barbier GG, Oesterhelt C (2007) Metabolism and metabolomics of eukaryotes living under extreme conditions. Int Rev Cytol 256:1–34
    • (2007) Int Rev Cytol , vol.256 , pp. 1-34
    • Weber, A.P.1    Horst, R.J.2    Barbier, G.G.3    Oesterhelt, C.4
  • 83
    • 0034554835 scopus 로고    scopus 로고
    • Comparative analysis of more than 3000 sequences reveals the existence of two pseudoknots in area V4 of eukaryotic small subunit ribosomal RNA
    • COI: 1:CAS:528:DC%2BD3MXmtlOk, PID: 11095680
    • Wuyts J, De Rijk P, Van de Peer Y, Pison G, Rousseeuw P, De Wachter R (2000) Comparative analysis of more than 3000 sequences reveals the existence of two pseudoknots in area V4 of eukaryotic small subunit ribosomal RNA. Nucleic Acids Res 28:4698–4708
    • (2000) Nucleic Acids Res , vol.28 , pp. 4698-4708
    • Wuyts, J.1    De Rijk, P.2    Van de Peer, Y.3    Pison, G.4    Rousseeuw, P.5    De Wachter, R.6
  • 84
    • 13844317082 scopus 로고    scopus 로고
    • Mapping of picoeucaryotes in marine ecosystems with quantitative PCR of the 18S rRNA gene
    • COI: 1:CAS:528:DC%2BD2MXhslCmsrk%3D, PID: 16329895
    • Zhu F, Massana R, Not F, Marie D, Vaulot D (2005) Mapping of picoeucaryotes in marine ecosystems with quantitative PCR of the 18S rRNA gene. FEMS Microbiol Ecol 52:79–92
    • (2005) FEMS Microbiol Ecol , vol.52 , pp. 79-92
    • Zhu, F.1    Massana, R.2    Not, F.3    Marie, D.4    Vaulot, D.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.