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Volumn 27, Issue 2, 2010, Pages 347-357

Infrequent transitions between saline and fresh waters in one of the most abundant microbial lineages (SAR11)

Author keywords

16S rDNA; Environmental transitions; Freshwater; Prokaryotes; Saline; SAR11

Indexed keywords

FRESH WATER; RIBOSOME DNA; SODIUM CHLORIDE;

EID: 74549165386     PISSN: 07374038     EISSN: 15371719     Source Type: Journal    
DOI: 10.1093/molbev/msp239     Document Type: Article
Times cited : (62)

References (43)
  • 1
    • 34548544450 scopus 로고    scopus 로고
    • Bridging the Rubicon: Phylogenetic analysis reveals repeated colonizations of marine and fresh waters by thalassiosiroid diatoms
    • Alverson AJ, Jansen RK, Theriot EC. 2007. Bridging the Rubicon: phylogenetic analysis reveals repeated colonizations of marine and fresh waters by thalassiosiroid diatoms. Mol Phylogenet Evol. 45:193-210
    • (2007) Mol Phylogenet Evol. , vol.45 , pp. 193-210
    • Alverson, A.J.1    Jansen, R.K.2    Theriot, E.C.3
  • 2
    • 84980877218 scopus 로고
    • The Venice system for the classification of marine waters according to salinity
    • Anonymous
    • Anonymous. 1958. The Venice system for the classification of marine waters according to salinity. Limnol Oceanogr. 3:346-347.
    • (1958) Limnol Oceanogr. , vol.3 , pp. 346-347
  • 4
    • 28944440027 scopus 로고    scopus 로고
    • Marine bacterial microdiversity as revealed by internal transcribed spacer analysis
    • Brown MV, Fuhrman JA. 2005. Marine bacterial microdiversity as revealed by internal transcribed spacer analysis. Aquat Microb Ecol. 41:15-23.
    • (2005) Aquat Microb Ecol. , vol.41 , pp. 15-23
    • Brown, M.V.1    Fuhrman, J.A.2
  • 5
    • 60749109199 scopus 로고    scopus 로고
    • Seasonal dynamics of SAR11 populations in the euphotic and mesopelagic zones of the northwestern Sargasso Sea
    • Carlson CA, Morris R, Parsons R, Treusch AH, Giovannoni SJ, Vergin K. 2009. Seasonal dynamics of SAR11 populations in the euphotic and mesopelagic zones of the northwestern Sargasso Sea. ISME J. 3:283-295.
    • (2009) ISME J. , vol.3 , pp. 283-295
    • Carlson, C.A.1    Morris, R.2    Parsons, R.3    Treusch, A.H.4    Giovannoni, S.J.5    Vergin, K.6
  • 6
    • 0034043778 scopus 로고    scopus 로고
    • Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis
    • Castresana J. 2000. Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. Mol Biol Evol. 17:540-552.
    • (2000) Mol Biol Evol. , vol.17 , pp. 540-552
    • Castresana, J.1
  • 7
    • 0006942901 scopus 로고
    • Ecological salinity boundaries in Poikilohaline waters
    • Dahl E. 1956. Ecological salinity boundaries in Poikilohaline waters. Oikos 7:1-21.
    • (1956) Oikos , vol.7 , pp. 1-21
    • Dahl, E.1
  • 10
    • 24344510265 scopus 로고    scopus 로고
    • Discordant 16S and 23S rRNA gene phylogenies for the genus Helicobacter: Implications for phylogenetic inference and systematics
    • Dewhirst FE, Shen Z, Scimeca MS, Stokes LN, Boumenna T, Chen T, Paster BJ, Fox JG. 2005. Discordant 16S and 23S rRNA gene phylogenies for the genus Helicobacter: implications for phylogenetic inference and systematics. J Bacteriol. 187:6106-6118.
    • (2005) J Bacteriol. , vol.187 , pp. 6106-6118
    • Dewhirst, F.E.1    Shen, Z.2    Scimeca, M.S.3    Stokes, L.N.4    Boumenna, T.5    Chen, T.6    Paster, B.J.7    Fox, J.G.8
  • 12
    • 46749116439 scopus 로고    scopus 로고
    • A rare SAR11 fosmid clone confirming genetic variability in the 'Candidatus Pelagibacter ubique' genome
    • Gilbert JA, Muhling M, Joint I. 2008. A rare SAR11 fosmid clone confirming genetic variability in the 'Candidatus Pelagibacter ubique' genome. ISME J. 2:790-793.
    • (2008) ISME J. , vol.2 , pp. 790-793
    • Gilbert, J.A.1    Muhling, M.2    Joint, I.3
  • 13
    • 27744438187 scopus 로고    scopus 로고
    • Proteorhodopsin in the ubiquitous marine bacterium SAR11
    • 12 co-authors
    • Giovannoni SJ, Bibbs L, Cho JC, et al. (12 co-authors). 2005. Proteorhodopsin in the ubiquitous marine bacterium SAR11. Nature. 438:82-85.
    • (2005) Nature. , vol.438 , pp. 82-85
    • Giovannoni, S.J.1    Bibbs, L.2    Cho, J.C.3
  • 15
    • 23844446418 scopus 로고    scopus 로고
    • Genome streamlining in a cosmopolitan oceanic bacterium
    • 14 co-authors
    • Giovannoni SJ, Tripp HJ, Givan S, et al. (14 co-authors). 2005. Genome streamlining in a cosmopolitan oceanic bacterium. Science 309:1242-1245.
    • (2005) Science , vol.309 , pp. 1242-1245
    • Giovannoni, S.J.1    Tripp, H.J.2    Givan, S.3
  • 17
    • 74549134948 scopus 로고
    • Saline lake ecosystems of the world
    • Dordrecht (The Netherlands) Dr. W. Junk Publishers Hebert PD, Remigio EA, Colbourne JK, Taylor DJ, Wilson CC Accelerated molecular evolution in halophilic crustaceans
    • Hammer T. 1986. Saline lake ecosystems of the world. Dordrecht (The Netherlands): Dr. W. Junk Publishers Hebert PD, Remigio EA, Colbourne JK, Taylor DJ, Wilson CC. 2002. Accelerated molecular evolution in halophilic crustaceans. Evolution 56:909-926.
    • (1986) Evolution , vol.56 , pp. 909-926
    • Hammer, T.1
  • 18
    • 44649159553 scopus 로고    scopus 로고
    • Novel estuarine bacterioplankton in rRNA operon libraries from the Chesapeake Bay
    • Kan J, Evans SE, Chen F, Suzuki MT. 2008. Novel estuarine bacterioplankton in rRNA operon libraries from the Chesapeake Bay. Aquat Microb Ecol. 51:55-66.
    • (2008) Aquat Microb Ecol. , vol.51 , pp. 55-66
    • Kan, J.1    Evans, S.E.2    Chen, F.3    Suzuki, M.T.4
  • 19
    • 45949107473 scopus 로고    scopus 로고
    • Recent developments in the MAFFT multiple sequence alignment program
    • Katoh K, Toh H. 2008. Recent developments in the MAFFT multiple sequence alignment program. Brief Bioinform. 9:286-298.
    • (2008) Brief Bioinform. , vol.9 , pp. 286-298
    • Katoh, K.1    Toh, H.2
  • 20
    • 0003912769 scopus 로고    scopus 로고
    • Limnoecology. the ecology of lakes and streams
    • Oxford: Oxford University Press. Laybourn-Parry J, Pearce DA The biodiversity and ecology of Antarctic lakes: models for evolution
    • Lampert W, Sommer U. 2007. Limnoecology. The ecology of lakes and streams. Oxford: Oxford University Press. Laybourn-Parry J, Pearce DA. 2007. The biodiversity and ecology of Antarctic lakes: models for evolution. Philos Trans R Soc Lond B Biol Sci. 362:2273-2289.
    • (2007) Philos Trans R Soc Lond B Biol Sci. , vol.362 , pp. 2273-2289
    • Lampert, W.1    Sommer, U.2
  • 21
    • 33845873289 scopus 로고    scopus 로고
    • Interactive Tree of Life (iTOL): An online tool for phylogenetic tree display and annotation
    • Letunic I, Bork P. 2007. Interactive Tree Of Life (iTOL): an online tool for phylogenetic tree display and annotation. Bioinformatics 23:127-128.
    • (2007) Bioinformatics , vol.23 , pp. 127-128
    • Letunic, I.1    Bork, P.2
  • 23
    • 29144464937 scopus 로고    scopus 로고
    • UniFrac: A new phylogenetic method for comparing microbial communities
    • Lozupone C, Knight R. 2005. UniFrac: a new phylogenetic method for comparing microbial communities. Appl Envir Microbiol. 71:8228-8235.
    • (2005) Appl Envir Microbiol. , vol.71 , pp. 8228-8235
    • Lozupone, C.1    Knight, R.2
  • 24
    • 0036324293 scopus 로고    scopus 로고
    • Phylogenetic approaches for describing and comparing the diversity of microbial communities
    • Martin AP. 2002. Phylogenetic approaches for describing and comparing the diversity of microbial communities. Appl Envir Microbiol. 68:3673-3682.
    • (2002) Appl Envir Microbiol. , vol.68 , pp. 3673-3682
    • Martin, A.P.1
  • 25
    • 53549118607 scopus 로고    scopus 로고
    • The metagenomics RAST server\-a public resource for the automatic phylogenetic and functional analysis of metagenomes
    • 12 co-authors
    • Meyer F, Paarmann D, D'Souza M, et al. (12 co-authors). 2008. The metagenomics RAST server\-a public resource for the automatic phylogenetic and functional analysis of metagenomes. BMC Bioinform. 9:386.
    • (2008) BMC Bioinform. , vol.9 , pp. 386
    • Meyer, F.1    Paarmann, D.2    D'Souza, M.3
  • 27
    • 63149143240 scopus 로고    scopus 로고
    • Comparison of productivity and phytoplankton in a warm (Kongsfjorden) and a cold (Hornsund) Spitsbergen fjord in midsummer 2002
    • Piwosz K, Walkusz W, Hapter R, Wieczorek P, Hop H, Wiktor J. 2009. Comparison of productivity and phytoplankton in a warm (Kongsfjorden) and a cold (Hornsund) Spitsbergen fjord in midsummer 2002. Polar Biol. 32:549-559.
    • (2009) Polar Biol. , vol.32 , pp. 549-559
    • Piwosz, K.1    Walkusz, W.2    Hapter, R.3    Wieczorek, P.4    Hop, H.5    Wiktor, J.6
  • 28
    • 74549116992 scopus 로고    scopus 로고
    • FigTree
    • University of Edinburgh, United Kingdom
    • Rambaut A. 2009. FigTree. Institute of Evolutionary Biology, University of Edinburgh, United Kingdom. http://tree.bio.ed. ac.uk/software/figtree/.
    • (2009) Institute of Evolutionary Biology
    • Rambaut, A.1
  • 29
    • 0002364934 scopus 로고    scopus 로고
    • The chemical stratification and microbial communities of Ace Lake, Antarctica: A review of the characteristics of a marine-derived meromictic lake
    • Rankin LM, Gibson JAE, Franzmann PD, Burton HR. 1999. The chemical stratification and microbial communities of Ace Lake, Antarctica: a review of the characteristics of a marine-derived meromictic lake. Polarforschung. 66:33-52.
    • (1999) Polarforschung. , vol.66 , pp. 33-52
    • Rankin, L.M.1    Gibson, J.A.E.2    Franzmann, P.D.3    Burton, H.R.4
  • 30
    • 0037043731 scopus 로고    scopus 로고
    • Cultivation of the ubiquitous SAR11 marine bacterioplankton clade
    • Rappe MS, Connon SA, Vergin KL, Giovannoni SJ. 2002. Cultivation of the ubiquitous SAR11 marine bacterioplankton clade. Nature 418:630-633.
    • (2002) Nature , vol.418 , pp. 630-633
    • Rappe, M.S.1    Connon, S.A.2    Vergin, K.L.3    Giovannoni, S.J.4
  • 32
  • 33
    • 33947238287 scopus 로고    scopus 로고
    • The Sorcerer II Global Ocean Sampling expedition: Northwest Atlantic through eastern tropical Pacific
    • 40 co-authors
    • Rusch DB, Halpern AL, Sutton G, et al. (40 co-authors). 2007. The Sorcerer II Global Ocean Sampling expedition: northwest Atlantic through eastern tropical Pacific. PLoS Biol. 5:e77.
    • (2007) PLoS Biol. , vol.5
    • Rusch, D.B.1    Halpern, A.L.2    Sutton, G.3
  • 35
    • 51649088380 scopus 로고    scopus 로고
    • Diversification of unicellular eukaryotes: Cryptomonad colonizations of marine and fresh waters inferred from revised 18S rRNA phylogeny
    • Shalchian-Tabrizi K, Brate J, Logares R, Klaveness D, Berney C, Jakobsen KS. 2008. Diversification of unicellular eukaryotes: cryptomonad colonizations of marine and fresh waters inferred from revised 18S rRNA phylogeny. Environ Microbiol. 10: 2635-2644.
    • (2008) Environ Microbiol. , vol.10 , pp. 2635-2644
    • Shalchian-Tabrizi, K.1    Brate, J.2    Logares, R.3    Klaveness, D.4    Berney, C.5    Jakobsen, K.S.6
  • 37
    • 33750403801 scopus 로고    scopus 로고
    • RAxML-VI-HPC: Maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models
    • Stamatakis A. 2006. RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 22:2688-2690.
    • (2006) Bioinformatics , vol.22 , pp. 2688-2690
    • Stamatakis, A.1
  • 38
    • 34547775666 scopus 로고    scopus 로고
    • Improvements of high-throughput culturing yielded novel SAR11 strains and other abundant marine bacteria from the Oregon coast and the Bermuda Atlantic Time Series study site
    • Stingl U, Tripp HJ, Giovannoni SJ. 2007. Improvements of high-throughput culturing yielded novel SAR11 strains and other abundant marine bacteria from the Oregon coast and the Bermuda Atlantic Time Series study site. ISME J. 1: 361-371.
    • (2007) ISME J. , vol.1 , pp. 361-371
    • Stingl, U.1    Tripp, H.J.2    Giovannoni, S.J.3
  • 41
    • 38849200974 scopus 로고    scopus 로고
    • Natural variation in SAR11 marine bacterioplankton genomes inferred from metagenomic data
    • Wilhelm LJ, Tripp HJ, Givan SA, Smith DP, Giovannoni SJ. 2007. Natural variation in SAR11 marine bacterioplankton genomes inferred from metagenomic data. Biol Direct. 2:27.
    • (2007) Biol Direct. , vol.2 , pp. 27
    • Wilhelm, L.J.1    Tripp, H.J.2    Givan, S.A.3    Smith, D.P.4    Giovannoni, S.J.5
  • 42
    • 33747359120 scopus 로고    scopus 로고
    • Bacterioplankton community composition along a salinity gradient of sixteen high-mountain lakes located on the Tibetan Plateau, China
    • Wu QL, Zwart G, Schauer M, Kamst-van Agterveld MP, Hahn MW. 2006. Bacterioplankton community composition along a salinity gradient of sixteen high-mountain lakes located on the Tibetan Plateau, China. Appl Environ Microbiol. 72:5478-5485.
    • (2006) Appl Environ Microbiol. , vol.72 , pp. 5478-5485
    • Wu, Q.L.1    Zwart, G.2    Schauer, M.3    Kamst-Van Agterveld, M.P.4    Hahn, M.W.5
  • 43
    • 0037178021 scopus 로고    scopus 로고
    • Typical freshwater bacteria: An analysis of available 16S rRNA gene sequences from plankton of lakes and rivers
    • Zwart G, Crump BC, Agterveld MPKV, Hagen F, Han SK. 2002. Typical freshwater bacteria: an analysis of available 16S rRNA gene sequences from plankton of lakes and rivers. Aquat Microb Ecol. 28:141-155.
    • (2002) Aquat Microb Ecol. , vol.28 , pp. 141-155
    • Zwart, G.1    Crump, B.C.2    Mpkv, A.3    Hagen, F.4    Han, S.K.5


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