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Volumn 478, Issue , 2015, Pages 112-122

Characterization of the complete genome of Barley yellow striate mosaic virus reveals a nested gene encoding a small hydrophobic protein

Author keywords

Ancillary gene; Barley yellow striate mosaic virus; Endoplasmic reticulum; Nested gene; Plant rhabdovirus

Indexed keywords

COMPLEMENTARY DNA; MESSENGER RNA; NUCLEOTIDE; SMALL INTERFERING RNA; VIRUS PROTEIN; VIRUS RNA;

EID: 84925495831     PISSN: 00426822     EISSN: 10960341     Source Type: Journal    
DOI: 10.1016/j.virol.2014.12.042     Document Type: Article
Times cited : (53)

References (48)
  • 1
    • 77953097118 scopus 로고    scopus 로고
    • Analysis of the complete nucleotide sequence of the polymerase gene of Barley yellow striate mosaic virus-Iranian isolate
    • Almasi R., Afsharifar A., Niazi A., Pakdel A., Izadpanah K. Analysis of the complete nucleotide sequence of the polymerase gene of Barley yellow striate mosaic virus-Iranian isolate. J. Phytopathol. 2010, 158:351-356.
    • (2010) J. Phytopathol. , vol.158 , pp. 351-356
    • Almasi, R.1    Afsharifar, A.2    Niazi, A.3    Pakdel, A.4    Izadpanah, K.5
  • 2
    • 77952569645 scopus 로고    scopus 로고
    • An integrated protein localization and interaction map for Potato yellow dwarf virus, type species of the genus Nucleorhabdovirus
    • Bandyopadhyay A., Kopperud K., Anderson G., Martin K., Goodin M. An integrated protein localization and interaction map for Potato yellow dwarf virus, type species of the genus Nucleorhabdovirus. Virology 2010, 402:61-71.
    • (2010) Virology , vol.402 , pp. 61-71
    • Bandyopadhyay, A.1    Kopperud, K.2    Anderson, G.3    Martin, K.4    Goodin, M.5
  • 3
    • 34250669555 scopus 로고    scopus 로고
    • PSITE vectors for stable integration or transient expression of autofluorescent protein fusions in plants: probing Nicotiana benthamiana-virus interactions
    • Chakrabarty R., Banerjee R., Chung S.M., Farman M., Citovsky V., Hogenhout S.A., Tzfira T., Goodin M. PSITE vectors for stable integration or transient expression of autofluorescent protein fusions in plants: probing Nicotiana benthamiana-virus interactions. Mol. Plant Microbe. Interact. 2007, 20:740-750.
    • (2007) Mol. Plant Microbe. Interact. , vol.20 , pp. 740-750
    • Chakrabarty, R.1    Banerjee, R.2    Chung, S.M.3    Farman, M.4    Citovsky, V.5    Hogenhout, S.A.6    Tzfira, T.7    Goodin, M.8
  • 4
    • 0028092982 scopus 로고
    • Sequence analysis of the trailer region of sonchus yellow net virus genomic RNA
    • Choi T.J., Wagner J.D., Jackson A.O. Sequence analysis of the trailer region of sonchus yellow net virus genomic RNA. Virology 1994, 202:33-40.
    • (1994) Virology , vol.202 , pp. 33-40
    • Choi, T.J.1    Wagner, J.D.2    Jackson, A.O.3
  • 5
    • 84990001310 scopus 로고
    • Investigations on a bullet-shaped virus of cereals isolated in Italy from planthoppers
    • Conti M. Investigations on a bullet-shaped virus of cereals isolated in Italy from planthoppers. J. Phytopathol. 1969, 66:275-279.
    • (1969) J. Phytopathol. , vol.66 , pp. 275-279
    • Conti, M.1
  • 7
    • 33646023372 scopus 로고    scopus 로고
    • Completion of the genome sequence of lettuce necrotic yellows virus, type species of the genus Cytorhabdovirus
    • Dietzgen R.G., Callaghan B., Wetzel T., Dale J.L. Completion of the genome sequence of lettuce necrotic yellows virus, type species of the genus Cytorhabdovirus. Virus Res. 2006, 118:16-22.
    • (2006) Virus Res. , vol.118 , pp. 16-22
    • Dietzgen, R.G.1    Callaghan, B.2    Wetzel, T.3    Dale, J.L.4
  • 8
    • 77956170809 scopus 로고    scopus 로고
    • RNA-based antiviral immunity
    • Ding S.-W. RNA-based antiviral immunity. Nat. Rev. Immunol. 2010, 10:632-644.
    • (2010) Nat. Rev. Immunol. , vol.10 , pp. 632-644
    • Ding, S.-W.1
  • 9
    • 34547587566 scopus 로고    scopus 로고
    • Antiviral immunity directed by small RNAs
    • Ding S.-W., Voinnet O. Antiviral immunity directed by small RNAs. Cell 2007, 130:413-426.
    • (2007) Cell , vol.130 , pp. 413-426
    • Ding, S.-W.1    Voinnet, O.2
  • 11
    • 0024522590 scopus 로고
    • MRNA sequence and deduced amino acid sequence of the mumps virus small hydrophobic protein gene
    • Elango N., Kovamees J., Varsanyi T.M., Norrby E. mRNA sequence and deduced amino acid sequence of the mumps virus small hydrophobic protein gene. J. Virol. 1989, 63:1413-1415.
    • (1989) J. Virol. , vol.63 , pp. 1413-1415
    • Elango, N.1    Kovamees, J.2    Varsanyi, T.M.3    Norrby, E.4
  • 13
    • 0036677814 scopus 로고    scopus 로고
    • PGD vectors: versatile tools for the expression of green and red fluorescent protein fusions in agroinfiltrated plant leaves
    • Goodin M.M., Dietzgen R.G., Schichnes D., Ruzin S., Jackson A.O. pGD vectors: versatile tools for the expression of green and red fluorescent protein fusions in agroinfiltrated plant leaves. Plant J. 2002, 31:375-383.
    • (2002) Plant J. , vol.31 , pp. 375-383
    • Goodin, M.M.1    Dietzgen, R.G.2    Schichnes, D.3    Ruzin, S.4    Jackson, A.O.5
  • 14
    • 84880079407 scopus 로고    scopus 로고
    • Rice yellow stunt rhabdovirus protein 6 suppresses systemic RNA silencing by blocking RDR6-mediated secondary siRNA synthesis
    • Guo H., Song X., Xie C., Huo Y., Zhang F., Chen X., Geng Y., Fang R. Rice yellow stunt rhabdovirus protein 6 suppresses systemic RNA silencing by blocking RDR6-mediated secondary siRNA synthesis. Mol. Plant Microbe. Interact. 2013, 26:927-936.
    • (2013) Mol. Plant Microbe. Interact. , vol.26 , pp. 927-936
    • Guo, H.1    Song, X.2    Xie, C.3    Huo, Y.4    Zhang, F.5    Chen, X.6    Geng, Y.7    Fang, R.8
  • 15
    • 0024378994 scopus 로고
    • Physical map of the genome of sonchus yellow net virus, a plant rhabdovirus with six genes and conserved gene junction sequences
    • Heaton L.A., Hillman B.I., Hunter B.G., Zuidema D., Jackson A.O. Physical map of the genome of sonchus yellow net virus, a plant rhabdovirus with six genes and conserved gene junction sequences. Proc. Natl. Acad. Sci. U.S.A 1989, 86:8665-8668.
    • (1989) Proc. Natl. Acad. Sci. U.S.A , vol.86 , pp. 8665-8668
    • Heaton, L.A.1    Hillman, B.I.2    Hunter, B.G.3    Zuidema, D.4    Jackson, A.O.5
  • 16
    • 38349119420 scopus 로고    scopus 로고
    • Complete nucleotide sequence of a putative new cytorhabdovirus infecting lettuce
    • Heim F., Lot H., Delecolle B., Bassler A., Krczal G., Wetzel T. Complete nucleotide sequence of a putative new cytorhabdovirus infecting lettuce. Arch. Virol. 2008, 153:81-92.
    • (2008) Arch. Virol. , vol.153 , pp. 81-92
    • Heim, F.1    Lot, H.2    Delecolle, B.3    Bassler, A.4    Krczal, G.5    Wetzel, T.6
  • 17
    • 0022187107 scopus 로고
    • Identification and predicted sequence of a previously unrecognized small hydrophobic protein, SH, of the paramyxovirus simian virus 5
    • Hiebert S.W., Paterson R.G., Lamb R.A. Identification and predicted sequence of a previously unrecognized small hydrophobic protein, SH, of the paramyxovirus simian virus 5. J. Virol. 1985, 55:744-751.
    • (1985) J. Virol. , vol.55 , pp. 744-751
    • Hiebert, S.W.1    Paterson, R.G.2    Lamb, R.A.3
  • 18
    • 0043169480 scopus 로고    scopus 로고
    • Novel structure of the genome of rice yellow stunt virus: identification of the gene 6-encoded virion protein
    • Huang Y., Zhao H., Luo Z., Chen X., Fang R.-X. Novel structure of the genome of rice yellow stunt virus: identification of the gene 6-encoded virion protein. J. Gen. Virol. 2003, 84:2259-2264.
    • (2003) J. Gen. Virol. , vol.84 , pp. 2259-2264
    • Huang, Y.1    Zhao, H.2    Luo, Z.3    Chen, X.4    Fang, R.-X.5
  • 19
    • 84880140530 scopus 로고    scopus 로고
    • Genetic characterization of novel putative rhabdovirus and dsRNA virus from Japanese persimmon
    • Ito T., Suzaki K., Nakano M. Genetic characterization of novel putative rhabdovirus and dsRNA virus from Japanese persimmon. J. Gen. Virol. 2013, 94:1917-1921.
    • (2013) J. Gen. Virol. , vol.94 , pp. 1917-1921
    • Ito, T.1    Suzaki, K.2    Nakano, M.3
  • 20
    • 77953103790 scopus 로고
    • Barley yellow striate mosaic virus as the cause of a major disease of wheat and millet in Iran
    • Izadpanah K., Ebrahim-Nesbat F., Afsharifar A. Barley yellow striate mosaic virus as the cause of a major disease of wheat and millet in Iran. J. Phytopathol. 1991, 131:290-296.
    • (1991) J. Phytopathol. , vol.131 , pp. 290-296
    • Izadpanah, K.1    Ebrahim-Nesbat, F.2    Afsharifar, A.3
  • 23
    • 33750361188 scopus 로고    scopus 로고
    • Virus counterdefense: diverse strategies for evading the RNA-silencing immunity
    • Li F., Ding S.-W. Virus counterdefense: diverse strategies for evading the RNA-silencing immunity. Annu. Rev. Microbiol. 2006, 60:503-531.
    • (2006) Annu. Rev. Microbiol. , vol.60 , pp. 503-531
    • Li, F.1    Ding, S.-W.2
  • 24
    • 0037334478 scopus 로고    scopus 로고
    • Induction of apoptosis by paramyxovirus simian virus 5 lacking a small hydrophobic gene
    • Lin Y., Bright A.C., Rothermel T.A., He B. Induction of apoptosis by paramyxovirus simian virus 5 lacking a small hydrophobic gene. J. Virol. 2003, 77:3371-3383.
    • (2003) J. Virol. , vol.77 , pp. 3371-3383
    • Lin, Y.1    Bright, A.C.2    Rothermel, T.A.3    He, B.4
  • 25
    • 33748321087 scopus 로고    scopus 로고
    • First record of barley yellow striate mosaic virus affecting wheat summer-nurseries in Syria
    • Makkouk K.M., Kumari S.G., Ghulam W., Attar N. First record of barley yellow striate mosaic virus affecting wheat summer-nurseries in Syria. Plant Dis. 2004, 88:83.
    • (2004) Plant Dis. , vol.88 , pp. 83
    • Makkouk, K.M.1    Kumari, S.G.2    Ghulam, W.3    Attar, N.4
  • 26
    • 84905276408 scopus 로고    scopus 로고
    • Plant rhabdoviruses: new insights and research needs in the interplay of negative-strand RNA viruses with plant and insect hosts
    • Mann K.S., Dietzgen R.G. Plant rhabdoviruses: new insights and research needs in the interplay of negative-strand RNA viruses with plant and insect hosts. Arch. Virol. 2014, 159:1889-1900.
    • (2014) Arch. Virol. , vol.159 , pp. 1889-1900
    • Mann, K.S.1    Dietzgen, R.G.2
  • 28
    • 0022569678 scopus 로고
    • Serological relationships between the nucleocapsids of some planthopper-borne rhabdoviruses of cereals
    • Milne R., Masenga V., Conti M. Serological relationships between the nucleocapsids of some planthopper-borne rhabdoviruses of cereals. Intervirology 1986, 25:83-87.
    • (1986) Intervirology , vol.25 , pp. 83-87
    • Milne, R.1    Masenga, V.2    Conti, M.3
  • 30
    • 34548487513 scopus 로고    scopus 로고
    • A multicolored set of in vivo organelle markers for co-localization studies in Arabidopsis and other plants
    • Nelson B.K., Cai X., Nebenfuhr A. A multicolored set of in vivo organelle markers for co-localization studies in Arabidopsis and other plants. Plant J. 2007, 51:1126-1136.
    • (2007) Plant J. , vol.51 , pp. 1126-1136
    • Nelson, B.K.1    Cai, X.2    Nebenfuhr, A.3
  • 31
    • 84882269465 scopus 로고    scopus 로고
    • A novel strategy for the determination of a rhabdovirus genome and its application to sequencing of eggplant mottled dwarf virus
    • Pappi P.G., Dovas C.I., Efthimiou K.E., Maliogka V.I., Katis N.I. A novel strategy for the determination of a rhabdovirus genome and its application to sequencing of eggplant mottled dwarf virus. Virus Genes 2013, 47:105-113.
    • (2013) Virus Genes , vol.47 , pp. 105-113
    • Pappi, P.G.1    Dovas, C.I.2    Efthimiou, K.E.3    Maliogka, V.I.4    Katis, N.I.5
  • 32
    • 0026612385 scopus 로고
    • Influenza-virus M2 Protein has ion channel activity
    • Pinto L.H., Holsinger L.J., Lamb R.A. Influenza-virus M2 Protein has ion channel activity. Cell 1992, 69:517-528.
    • (1992) Cell , vol.69 , pp. 517-528
    • Pinto, L.H.1    Holsinger, L.J.2    Lamb, R.A.3
  • 33
    • 70349737853 scopus 로고    scopus 로고
    • Overlapping genes produce proteins with unusual sequence properties and offer insight into de novo protein creation
    • Rancurel C., Khosravi M., Dunker A.K., Romero P.R., Karlin D. Overlapping genes produce proteins with unusual sequence properties and offer insight into de novo protein creation. J. Virol. 2009, 83:10719-10736.
    • (2009) J. Virol. , vol.83 , pp. 10719-10736
    • Rancurel, C.1    Khosravi, M.2    Dunker, A.K.3    Romero, P.R.4    Karlin, D.5
  • 34
    • 24044525065 scopus 로고    scopus 로고
    • Shotgun sequencing of the negative-sense RNA genome of the rhabdovirus maize mosaic virus
    • Reed S.E., Tsai C.-W., Willie K.J., Redinbaugh M.G., Hogenhout S.A. Shotgun sequencing of the negative-sense RNA genome of the rhabdovirus maize mosaic virus. J. Virol. Methods 2005, 129:91-96.
    • (2005) J. Virol. Methods , vol.129 , pp. 91-96
    • Reed, S.E.1    Tsai, C.-W.2    Willie, K.J.3    Redinbaugh, M.G.4    Hogenhout, S.A.5
  • 35
    • 13644264346 scopus 로고    scopus 로고
    • Taro vein chlorosis virus: characterization and variability of a new nucleorhabdovirus
    • Revill P., Trinh X., Dale J., Harding R. Taro vein chlorosis virus: characterization and variability of a new nucleorhabdovirus. J. Gen. Virol. 2005, 86:491-499.
    • (2005) J. Gen. Virol. , vol.86 , pp. 491-499
    • Revill, P.1    Trinh, X.2    Dale, J.3    Harding, R.4
  • 37
    • 84869060468 scopus 로고    scopus 로고
    • Evolution of viral proteins originated de novo by overprinting
    • Sabath N., Wagner A., Karlin D. Evolution of viral proteins originated de novo by overprinting. Mol. Biol. Evol. 2012, 29:3767-3780.
    • (2012) Mol. Biol. Evol. , vol.29 , pp. 3767-3780
    • Sabath, N.1    Wagner, A.2    Karlin, D.3
  • 38
    • 33646838039 scopus 로고    scopus 로고
    • The Tombusvirus-encoded P19: from irrelevance to elegance
    • Scholthof H.B. The Tombusvirus-encoded P19: from irrelevance to elegance. Nat. Rev. Microbiol. 2006, 4:405-411.
    • (2006) Nat. Rev. Microbiol. , vol.4 , pp. 405-411
    • Scholthof, H.B.1
  • 39
    • 18744409083 scopus 로고    scopus 로고
    • Characterization of the tupaia rhabdovirus genome reveals a long open reading frame overlapping with P and a novel gene encoding a small hydrophobic protein
    • Springfeld C., Darai G., Cattaneo R. Characterization of the tupaia rhabdovirus genome reveals a long open reading frame overlapping with P and a novel gene encoding a small hydrophobic protein. J. Virol. 2005, 79:6781-6790.
    • (2005) J. Virol. , vol.79 , pp. 6781-6790
    • Springfeld, C.1    Darai, G.2    Cattaneo, R.3
  • 40
    • 0033642923 scopus 로고    scopus 로고
    • Complete nucleotide sequence of northern cereal mosaic virus and its genome organization
    • Tanno F., Nakatsu A., Toriyama S., Kojima M. Complete nucleotide sequence of northern cereal mosaic virus and its genome organization. Arch. Virol. 2000, 145:1373-1384.
    • (2000) Arch. Virol. , vol.145 , pp. 1373-1384
    • Tanno, F.1    Nakatsu, A.2    Toriyama, S.3    Kojima, M.4
  • 41
    • 17444402486 scopus 로고    scopus 로고
    • Complete genome sequence and in planta subcellular localization of maize fine streak virus proteins
    • Tsai C.-W., Redinbaugh M.G., Willie K.J., Reed S., Goodin M., Hogenhout S.A. Complete genome sequence and in planta subcellular localization of maize fine streak virus proteins. J. Virol. 2005, 79:5304-5314.
    • (2005) J. Virol. , vol.79 , pp. 5304-5314
    • Tsai, C.-W.1    Redinbaugh, M.G.2    Willie, K.J.3    Reed, S.4    Goodin, M.5    Hogenhout, S.A.6
  • 43
    • 79957761869 scopus 로고    scopus 로고
    • The 21-nucleotide, but not 22-nucleotide, viral secondary small interfering RNAs direct potent antiviral defense by two cooperative argonautes in Arabidopsis thaliana
    • Wang X.-B., Jovel J., Udomporn P., Wang Y., Wu Q., Li W.-X., Gasciolli V., Vaucheret H., Ding S.-W. The 21-nucleotide, but not 22-nucleotide, viral secondary small interfering RNAs direct potent antiviral defense by two cooperative argonautes in Arabidopsis thaliana. Plant Cell 2011, 23:1625-1638.
    • (2011) Plant Cell , vol.23 , pp. 1625-1638
    • Wang, X.-B.1    Jovel, J.2    Udomporn, P.3    Wang, Y.4    Wu, Q.5    Li, W.-X.6    Gasciolli, V.7    Vaucheret, H.8    Ding, S.-W.9
  • 45
    • 0028331131 scopus 로고
    • Genomic organization of lettuce necrotic yellows rhabdovirus
    • Wetzel T., Dietzgen R., Dale J. Genomic organization of lettuce necrotic yellows rhabdovirus. Virology 1994, 200:401-412.
    • (1994) Virology , vol.200 , pp. 401-412
    • Wetzel, T.1    Dietzgen, R.2    Dale, J.3
  • 46
    • 0028065173 scopus 로고
    • Analysis of the nucleocapsid gene of lettuce necrotic yellows rhabdovirus
    • Wetzel T., Dietzgen R., Geering A., Dale J. Analysis of the nucleocapsid gene of lettuce necrotic yellows rhabdovirus. Virology 1994, 202:1054-1057.
    • (1994) Virology , vol.202 , pp. 1054-1057
    • Wetzel, T.1    Dietzgen, R.2    Geering, A.3    Dale, J.4
  • 47
    • 76249103869 scopus 로고    scopus 로고
    • Virus discovery by deep sequencing and assembly of virus-derived small silencing RNAs
    • Wu Q., Luo Y., Lu R., Lau N., Lai E.C., Li W.-X., Ding S.-W. Virus discovery by deep sequencing and assembly of virus-derived small silencing RNAs. Proc. Natl. Acad. Sci. U.S.A. 2010, 107:1606-1611.
    • (2010) Proc. Natl. Acad. Sci. U.S.A. , vol.107 , pp. 1606-1611
    • Wu, Q.1    Luo, Y.2    Lu, R.3    Lau, N.4    Lai, E.C.5    Li, W.-X.6    Ding, S.-W.7
  • 48
    • 0010530513 scopus 로고
    • Detection and sequence of plus-strand leader RNA of sonchus yellow net virus, a plant rhabdovirus
    • Zuidema D., Heaton L.A., Hanau R., Jackson A. Detection and sequence of plus-strand leader RNA of sonchus yellow net virus, a plant rhabdovirus. Proc. Natl. Acad. Sci. U.S.A. 1986, 83:5019-5023.
    • (1986) Proc. Natl. Acad. Sci. U.S.A. , vol.83 , pp. 5019-5023
    • Zuidema, D.1    Heaton, L.A.2    Hanau, R.3    Jackson, A.4


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