De novo assembly and analysis of Cassia obtusifolia seed transcriptome to identify genes involved in the biosynthesis of active metabolites

Bioscience, Biotechnology and Biochemistry

Volumn 78, Issue 5, 2014, Pages 791-799

  Liu, Zubi ^a   Song, Tao ^a   Zhu, Qiankun ^a   Wang, Wanjun ^a   Zhou, Jiayu ^a   Liao, Hai ^a  

^a SOUTHWEST JIAOTONG UNIVERSITY   (China)

Author keywords

Active metabolites; Cassia obtusifolia; Transcriptome; Unigenes

Indexed keywords

BIOCHEMISTRY; BIOLOGICAL MEMBRANES; BIOMOLECULES; BIOSYNTHESIS; CYTOLOGY; GENES; KETONES;

ACTIVE METABOLITES; CASSIA OBTUSIFOLIA; CASSIA OBTUSIFOLIA SEEDS; GLUCOSYLTRANSFERASES; LIPID TRANSFER PROTEIN; METHYLTRANSFERASES; TRANSCRIPTOMES; UNIGENES;

METABOLITES;

SENNA OBTUSIFOLIA;

ANTHRAQUINONE DERIVATIVE; CARRIER PROTEIN; FLAVONOID; LIPID TRANSFER PROTEIN; TERPENE;

AMINO ACID SEQUENCE; BIOSYNTHESIS; CASSIA; CHEMISTRY; GENE EXPRESSION PROFILING; GENE LIBRARY; GENE ONTOLOGY; GENETICS; GENOMICS; LIPID METABOLISM; METABOLISM; MOLECULAR GENETICS; PLANT GENE; PLANT SEED;

AMINO ACID SEQUENCE; ANTHRAQUINONES; CARRIER PROTEINS; CASSIA; FLAVONOIDS; GENE EXPRESSION PROFILING; GENE LIBRARY; GENE ONTOLOGY; GENES, PLANT; GENOMICS; LIPID METABOLISM; MOLECULAR SEQUENCE DATA; SEEDS; TERPENES;

EID: 84925483987     PISSN: 09168451     EISSN: 13476947     Source Type: Journal    
DOI: 10.1080/09168451.2014.905182     Document Type: Article

References (20)

1. Kim S-J, Kim K-W, Kim D-S, Kim M-C, Jeon Y-D, Kim S-G, Jung H-J, Jang H-J, Lee B-C, Chung W-S. The protective effect of Cassia obtusifolia on DSS-induced colitis. Am. J. Chinese Med. 2011;39:565-577.
2. Ju MS, Kim HG, Choi JG, Ryu JH, Hur J, Kim YJ, Oh MS. Cassiae semen, a seed of Cassia obtusifolia, has neuroprotective effects in Parkinson's disease models. Food Chem. Toxicol. 2010;48:2037-2044.
3. Sob SVT, Wabo HK, Tchinda AT, Tane P, Ngadjui BT, Ye Y. Anthraquinones, sterols, triterpenoids and xanthones from Cassia obtusifolia. Biochem. Syst. Ecol. 2010;38:342-345.
4. Furumoto THoshikuma A. Biosynthetic origin of 2-geranyl-1, 4- naphthoquinone and its related anthraquinone in a Sesamum indicum hairy root culture. Phytochemistry. 2011;72:871-874.
5. Yamazaki M, Mochida K, Asano T, Nakabayashi R, Chiba M, Udomson N, Yamazaki Y, Goodenowe DB, Sankawa U, Yoshida T. Coupling deep transcriptome analysis with untargeted metabolic profiling in Ophiorrhiza pumila to further the understanding of the biosynthesis of the anti-cancer alkaloid camptothecin and anthraquinones. Plant Cell Physiol. 2013;54:686-696.
6. Chintharlapalli S, Papineni S, Ramaiah SK, Safe S. Betulinic acid inhibits prostate cancer growth through inhibition of specificity protein transcription factors. Cancer Res. 2007;67: 2816-2823.
7. Xiang L, Hu Q, Gu Q. Analysis of fatty oil constitutions from Semen cassiae and its stability. Shanghai J. Tradit. Chin. Med. 2012;46:78-81.
8. Conesa A, Götz S, García-Gómez JM, Terol J, Talón M, Robles M. Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research. Bioinformatics. 2005;21:3674-3676.
9. Sun X, Zhou S, Meng F, Liu S. De novo assembly and characterization of the garlic (Allium sativum) bud transcriptome by Illumina sequencing. Plant Cell Rep. 2012;31:1823-1828.
10. Ye J, Fang L, Zheng H, Zhang Y, Chen J, Zhang Z, Wang J, Li S, Li R, Bolund L. WEGO: a web tool for plotting GO annotations. Nucleic acids Res. 2006;34:W293-W297.
11. Mortazavi A, Williams BA, McCue K, Schaeffer L, Wold B. Mapping and quantifying mammalian transcriptomes by RNA-Seq. Nat. Methods. 2008;5:621-628.
12. Zeng L, Zhao L, Sun J. Analysis of genetic relatedness of genetic resources of Tagetes as revealed by ISSR. China Agric. Sci. 2010;43:215-222.
13. Wang S, Wang X, He Q, Liu X, Xu W, Li L, Gao J, Wang F. Transcriptome analysis of the roots at early and late seedling stages using Illumina paired-end sequencing and development of EST-SSR markers in radish. Plant Cell Rep. 2012;31: 1437-1447.
14. Guo H, Chang Z, Yang R, Guo D, Zheng J. Anthraquinones from hairy root cultures of Cassia obtusifolia. Phytochemistry. 1998;49:1623-1625.
15. Gago G, Diacovich L, Arabolaza A, Tsai SC, Gramajo H. Fatty acid biosynthesis in actinomycetes. FEMS Microbiol. Rev. 2011;35:475-497.
16. Davis MS, Solbiati J, Cronan JE. Overproduction of acetyl-CoA carboxylase activity increases the rate of fatty acid biosynthesis in Escherichia coli. J. Biol. Chem. 2000;275:28593-28598.
17. Ono NN, Britton MT, Fass JN, Nicolet CM, Lin D, Tian L. Exploring the transcriptome landscape of pomegranate fruit peel for natural product biosynthetic gene and SSR marker discovery. J. Integ. Plant Biol. 2011;53:800-813.
18. Drew DP, Dueholm B, Weitzel C, Zhang Y, Sensen CW, Simonsen HT. Transcriptome analysis of Thapsia laciniata Rouy provides insights into terpenoid biosynthesis and diversity in apiaceae. Int. J. Mol. Sci. 2013;14:9080-9098.
19. Annadurai RS, Jayakumar V, Mugasimangalam RC, Katta MA, Anand S, Gopinathan S, Sarma SP, Fernandes SJ, Mullapudi N, Murugesan S. Next generation sequencing and de novo transcriptome analysis of Costus pictus D. Don, a non-model plant with potent anti-diabetic properties. BMC genomics. 2012;13: 663-648.
20. Annadurai RS, Neethiraj R, Jayakumar V, Damodaran AC, Rao SN, Katta MA, Gopinathan S, Sarma SP, Senthilkumar V, Niranjan V. De novo transcriptome assembly (NGS) of Curcuma longa L. rhizome reveals novel transcripts related to anticancer and antimalarial terpenoids. PloS one. 2013;8:e56217.