-
1
-
-
0016747961
-
Sequence Repeats in Alpha-Tropomyosin
-
Mclachlan, A. D.; Stewart, M.; Smillie, L. B. Sequence Repeats in Alpha-Tropomyosin J. Mol. Biol. 1975, 98, 281-291
-
(1975)
J. Mol. Biol.
, vol.98
, pp. 281-291
-
-
McLachlan, A.D.1
Stewart, M.2
Smillie, L.B.3
-
2
-
-
67949095706
-
Position-Dependent Effects of Fluorinated Amino Acids on the Hydrophobic Core Formation of a Heterodimeric Coiled Coil
-
Salwiczek, M.; Samsonov, S.; Vagt, T.; Nyakatura, E.; Fleige, E.; Numata, J.; Cölfen, H.; Pisabarro, M. T.; Koksch, B. Position-Dependent Effects Of Fluorinated Amino Acids On The Hydrophobic Core Formation of a Heterodimeric Coiled Coil Chem.-Eur. J. 2009, 15, 7628-7636
-
(2009)
Chem.-Eur. J.
, vol.15
, pp. 7628-7636
-
-
Salwiczek, M.1
Samsonov, S.2
Vagt, T.3
Nyakatura, E.4
Fleige, E.5
Numata, J.6
Cölfen, H.7
Pisabarro, M.T.8
Koksch, B.9
-
3
-
-
77749252728
-
Towards Identifying Preferred Interaction Partners of Fluorinated Amino Acids Within the Hydrophobic Environment of a Dimeric Coiled Coil Peptide
-
Vagt, T.; Nyakatura, E.; Salwiczek, M.; Jäckel, C.; Koksch, B. Towards Identifying Preferred Interaction Partners Of Fluorinated Amino Acids Within The Hydrophobic Environment of a Dimeric Coiled Coil Peptide Org. Biomol. Chem. 2010, 8, 1382-1386
-
(2010)
Org. Biomol. Chem.
, vol.8
, pp. 1382-1386
-
-
Vagt, T.1
Nyakatura, E.2
Salwiczek, M.3
Jäckel, C.4
Koksch, B.5
-
4
-
-
84878067518
-
Accommodating Fluorinated Amino Acids in Helical Peptide Environments
-
Nyakatura, E. K.; Reimann, O.; Vagt, T.; Salwiczek, M.; Koksch, B. Accommodating Fluorinated Amino Acids in Helical Peptide Environments RSC Adv. 2013, 3, 6319-6322
-
(2013)
RSC Adv.
, vol.3
, pp. 6319-6322
-
-
Nyakatura, E.K.1
Reimann, O.2
Vagt, T.3
Salwiczek, M.4
Koksch, B.5
-
5
-
-
17444433002
-
The Design of Coiled-Coil Structures and Assemblies
-
In; Academic Press, Vol
-
Woolfson, D. N.; David, A. D.; Parry, A. J. M. S. The Design Of Coiled-Coil Structures and Assemblies. In Advances in Protein Chemistry; Academic Press, 2005; Vol. 70, pp 79-112.
-
(2005)
Advances in Protein Chemistry
, vol.70
, pp. 79-112
-
-
Woolfson, D.N.1
David, A.D.2
Parry, A.J.M.S.3
-
6
-
-
84897013072
-
An Unusual Interstrand H-Bond Stabilizes the Heteroassembly of Helical ±-Chimeras with Natural Peptides
-
Nyakatura, E. K.; Rezaei Araghi, R.; Mortier, J.; Wieczorek, S.; Baldauf, C.; Wolber, G.; Koksch, B. An Unusual Interstrand H-Bond Stabilizes The Heteroassembly Of Helical ±-Chimeras with Natural Peptides ACS Chem. Biol. 2014, 9, 613-616
-
(2014)
ACS Chem. Biol.
, vol.9
, pp. 613-616
-
-
Nyakatura, E.K.1
Rezaei Araghi, R.2
Mortier, J.3
Wieczorek, S.4
Baldauf, C.5
Wolber, G.6
Koksch, B.7
-
7
-
-
84918528185
-
- and -Amino Acids at ±-Helical Interfaces: Toward the Formation of Highly Stable Foldameric Coiled Coils
-
Nyakatura, E. K.; Mortier, J.; Radtke, V. S.; Wieczorek, S.; Rezaei Araghi, R.; Baldauf, C.; Wolber, G.; Koksch, B. - and -Amino Acids at ±-Helical Interfaces: Toward the Formation of Highly Stable Foldameric Coiled Coils ACS Med. Chem. Lett. 2014, 5, 1300-1303
-
(2014)
ACS Med. Chem. Lett.
, vol.5
, pp. 1300-1303
-
-
Nyakatura, E.K.1
Mortier, J.2
Radtke, V.S.3
Wieczorek, S.4
Rezaei Araghi, R.5
Baldauf, C.6
Wolber, G.7
Koksch, B.8
-
8
-
-
0026356891
-
Predicting Coiled Coils from Protein Sequences
-
Lupas, A.; Van Dyke, M.; Stock, J. Predicting Coiled Coils From Protein Sequences Science 1991, 252, 1162
-
(1991)
Science
, vol.252
, pp. 1162
-
-
Lupas, A.1
Van Dyke, M.2
Stock, J.3
-
9
-
-
0034616959
-
Effects of Side-Chain Characteristics on Stability and Oligomerization State of A de Novo-Designed Model Coiled-Coil: 20 Amino Acid Substitutions in Position D
-
Tripet, B.; Wagschal, K.; Lavigne, P.; Mant, C. T.; Hodges, R. S. Effects Of Side-Chain Characteristics On Stability And Oligomerization State Of A De Novo-Designed Model Coiled-Coil: 20 Amino Acid Substitutions in Position D.J. Mol. Biol. 2000, 300, 377-402
-
(2000)
J. Mol. Biol.
, vol.300
, pp. 377-402
-
-
Tripet, B.1
Wagschal, K.2
Lavigne, P.3
Mant, C.T.4
Hodges, R.S.5
-
10
-
-
0242412517
-
Parallel Coiled-Coil Association of the Rhoa-Binding Domain in Rho-Kinase
-
Shimizu, T.; Ihara, K.; Maesaki, R.; Amano, M.; Kaibuchi, K.; Hakoshima, T. Parallel Coiled-Coil Association of the Rhoa-Binding Domain in Rho-Kinase J. Biol. Chem. 2003, 278, 46046-46051
-
(2003)
J. Biol. Chem.
, vol.278
, pp. 46046-46051
-
-
Shimizu, T.1
Ihara, K.2
Maesaki, R.3
Amano, M.4
Kaibuchi, K.5
Hakoshima, T.6
-
11
-
-
27344454932
-
GROMACS: Fast, Flexible, and Free
-
Van Der Spoel, D.; Lindahl, E.; Hess, B.; Groenhof, G.; Mark, A. E.; Berendsen, H. J. GROMACS: Fast, Flexible, and Free J. Comput. Chem. 2005, 26, 1701-1718
-
(2005)
J. Comput. Chem.
, vol.26
, pp. 1701-1718
-
-
Van Der Spoel, D.1
Lindahl, E.2
Hess, B.3
Groenhof, G.4
Mark, A.E.5
Berendsen, H.J.6
-
12
-
-
77953513118
-
Improved Side-Chain Torsion Potentials for the Amber ff99sb Protein Force Field
-
Lindorff-Larsen, K.; Piana, S.; Palmo, K.; Maragakis, P.; Klepeis, J. L.; Dror, R. O.; Shaw, D. E. Improved Side-Chain Torsion Potentials for the Amber ff99sb Protein Force Field Proteins 2010, 78, 1950-1958
-
(2010)
Proteins
, vol.78
, pp. 1950-1958
-
-
Lindorff-Larsen, K.1
Piana, S.2
Palmo, K.3
Maragakis, P.4
Klepeis, J.L.5
Dror, R.O.6
Shaw, D.E.7
-
13
-
-
0027968834
-
Helix-Stabilizing Interaction between Tyrosine and Leucine or Valine when the Spacing is i, i+ 4
-
Padmanabhan, S.; Baldwin, R. L. Helix-Stabilizing Interaction Between Tyrosine and Leucine or Valine when the Spacing Is i, i+ 4 J. Mol. Biol. 1994, 241, 706-713
-
(1994)
J. Mol. Biol.
, vol.241
, pp. 706-713
-
-
Padmanabhan, S.1
Baldwin, R.L.2
-
14
-
-
0023521842
-
Analysis of the Relationship between Side-Chain Conformation and Secondary Structure in Globular Proteins
-
Mcgregor, M. J.; Islam, S. A.; Sternberg, M. J. Analysis of the Relationship between Side-Chain Conformation and Secondary Structure in Globular Proteins J. Mol. Biol. 1987, 198, 295-310
-
(1987)
J. Mol. Biol.
, vol.198
, pp. 295-310
-
-
McGregor, M.J.1
Islam, S.A.2
Sternberg, M.J.3
-
15
-
-
0002300553
-
Hydrogen-Bond Kinetics in Liquid Water
-
Luzar, A.; Chandler, D. Hydrogen-Bond Kinetics in Liquid Water Nature 1996, 379, 55-57
-
(1996)
Nature
, vol.379
, pp. 55-57
-
-
Luzar, A.1
Chandler, D.2
-
16
-
-
0023949179
-
Combinatorial Cassette Mutagenesis As a Probe of the Informational Content o9f Protein Sequences
-
Reidhaar-Olson, J. F.; Sauer, R. T. Combinatorial Cassette Mutagenesis As a Probe of the Informational Content o9f Protein Sequences Science 1988, 241, 53-57
-
(1988)
Science
, vol.241
, pp. 53-57
-
-
Reidhaar-Olson, J.F.1
Sauer, R.T.2
-
17
-
-
0003400039
-
-
Cold Spring Harbor Laboratory Press: Cold Spring Harbor, New York
-
Barbas, C. F., III; Burton, D. R.; Scott, J. K.; Silverman, G. J. Phage Display: A Laboratory Manual; Cold Spring Harbor Laboratory Press: Cold Spring Harbor, New York, 2001.
-
(2001)
Phage Display: A Laboratory Manual
-
-
Barbas, C.F.1
Burton, D.R.2
Scott, J.K.3
Silverman, G.J.4
-
18
-
-
84855757480
-
-
2013.08; Chemical Computing Group Inc. Montreal, QC, Canada
-
Molecular Operating Environment, 2013.08; Chemical Computing Group Inc.: Montreal, QC, Canada, 2013.
-
(2013)
Molecular Operating Environment
-
-
-
19
-
-
46249092554
-
GROMACS 4: Algorithms for Highly Efficient, Load-Balanced, and Scalable Molecular Simulation
-
Hess, B.; Kutzner, C.; Van Der Spoel, D.; Lindahl, E. GROMACS 4: Algorithms for Highly Efficient, Load-Balanced, and Scalable Molecular Simulation J. Chem. Theory Comput. 2008, 4, 435-447
-
(2008)
J. Chem. Theory Comput.
, vol.4
, pp. 435-447
-
-
Hess, B.1
Kutzner, C.2
Van Der Spoel, D.3
Lindahl, E.4
-
20
-
-
33645961739
-
A Smooth Particle Mesh Ewald Method
-
Essmann, U.; Perera, L.; Berkowitz, M. L.; Darden, T.; Lee, H.; Pedersen, L. G. A Smooth Particle Mesh Ewald Method J. Chem. Phys. 1995, 103, 8577-8593
-
(1995)
J. Chem. Phys.
, vol.103
, pp. 8577-8593
-
-
Essmann, U.1
Perera, L.2
Berkowitz, M.L.3
Darden, T.4
Lee, H.5
Pedersen, L.G.6
-
21
-
-
0000388705
-
LINCS: A Linear Constraint Solver for Molecular Simulations
-
Hess, B.; Bekker, H.; Berendsen, H. J. C.; Fraaije, J. G. E. M. LINCS: A Linear Constraint Solver for Molecular Simulations J. Comput. Chem. 1997, 18, 1463-1472
-
(1997)
J. Comput. Chem.
, vol.18
, pp. 1463-1472
-
-
Hess, B.1
Bekker, H.2
Berendsen, H.J.C.3
Fraaije, J.G.E.M.4
-
22
-
-
0001538909
-
Canonical Dynamics: Equilibrium Phase-Space Distributions
-
Hoover, W. G. Canonical Dynamics: Equilibrium Phase-Space Distributions Phys. Rev. A 1985, 31, 1695-1697
-
(1985)
Phys. Rev. A
, vol.31
, pp. 1695-1697
-
-
Hoover, W.G.1
-
23
-
-
34547809547
-
A Unified Formulation of the Constant Temperature Molecular-Dynamics Methods
-
Nose, S. A Unified Formulation Of The Constant Temperature Molecular-Dynamics Methods J. Chem. Phys. 1984, 81, 511-519
-
(1984)
J. Chem. Phys.
, vol.81
, pp. 511-519
-
-
Nose, S.1
-
24
-
-
66149185375
-
A Molecular-Dynamics Study of Crystal-Structure Transformations
-
Parrinello, M.; Rahman, A. A Molecular-Dynamics Study of Crystal-Structure Transformations Bull. Am. Phys. Soc. 1981, 26, 380-380
-
(1981)
Bull. Am. Phys. Soc.
, vol.26
, pp. 380-380
-
-
Parrinello, M.1
Rahman, A.2
-
25
-
-
79958185452
-
Software News and Updates MDanalysis: A Toolkit for the Analysis of Molecular Dynamics Simulations
-
Michaud-Agrawal, N.; Denning, E. J.; Woolf, T. B.; Beckstein, O. Software News and Updates MDanalysis: A Toolkit for the Analysis of Molecular Dynamics Simulations J. Comput. Chem. 2011, 32, 2319-2327
-
(2011)
J. Comput. Chem.
, vol.32
, pp. 2319-2327
-
-
Michaud-Agrawal, N.1
Denning, E.J.2
Woolf, T.B.3
Beckstein, O.4
-
26
-
-
60749136514
-
Isothermal-Isobaric Molecular Dynamics Using Stochastic Velocity Rescaling
-
Bussi, G.; Zykova-Timan, T.; Parrinello, M. Isothermal-Isobaric Molecular Dynamics Using Stochastic Velocity Rescaling J. Chem. Phys. 2009, 130, 074101
-
(2009)
J. Chem. Phys.
, vol.130
, pp. 074101
-
-
Bussi, G.1
Zykova-Timan, T.2
Parrinello, M.3
-
27
-
-
33750587438
-
Molecular-Dynamics with Coupling to an External Bath
-
Berendsen, H. J. C.; Postma, J. P. M.; Vangunsteren, W. F.; Dinola, A.; Haak, J. R. Molecular-Dynamics With Coupling to an External Bath J. Chem. Phys. 1984, 81, 3684-3690
-
(1984)
J. Chem. Phys.
, vol.81
, pp. 3684-3690
-
-
Berendsen, H.J.C.1
Postma, J.P.M.2
Vangunsteren, W.F.3
Dinola, A.4
Haak, J.R.5
|