-
1
-
-
84902446851
-
Classification of intrinsically disordered regions and proteins
-
van der Lee, R. et al. Classification of intrinsically disordered regions and proteins. Chem Rev 114, 6589-631 (2014).
-
(2014)
Chem Rev
, vol.114
, pp. 6589-6631
-
-
Van Der Lee, R.1
-
2
-
-
0032749078
-
Intrinsically unstructured proteins: Re-assessing the protein structure- function paradigm
-
Wright, P. E. & Dyson, H. J. Intrinsically unstructured proteins: re-assessing the protein structure- function paradigm. J Mol Biol 293, 321-31 (1999).
-
(1999)
J Mol Biol
, vol.293
, pp. 321-331
-
-
Wright, P.E.1
Dyson, H.J.2
-
3
-
-
27144464910
-
Flexible nets
-
Dunker, A. K., Cortese, M. S., Romero, P., Iakoucheva, L. M. & Uversky, V. N. Flexible nets. FEBS Journal 272, 5129-5148 (2005).
-
(2005)
FEBS Journal
, vol.272
, pp. 5129-5148
-
-
Dunker, A.K.1
Cortese, M.S.2
Romero, P.3
Iakoucheva, L.M.4
Uversky, V.N.5
-
4
-
-
34250821717
-
Mechanism of coupled folding and binding of an intrinsically disordered protein
-
Sugase, K., Dyson, H. J. & Wright, P. E. Mechanism of coupled folding and binding of an intrinsically disordered protein. Nature 447, 1021-5 (2007).
-
(2007)
Nature
, vol.447
, pp. 1021-1025
-
-
Sugase, K.1
Dyson, H.J.2
Wright, P.E.3
-
5
-
-
0036803243
-
Intrinsically unstructured proteins
-
Tompa, P. Intrinsically unstructured proteins. TIBS 27, 527-533 (2002).
-
(2002)
TIBS
, vol.27
, pp. 527-533
-
-
Tompa, P.1
-
6
-
-
63549102895
-
Intrinsic disorder in protein interactions: Insights from a comprehensive structural analysis
-
Fong, J. H. et al . Intrinsic disorder in protein interactions: insights from a comprehensive structural analysis. PLoS Comput Biol 5, e1000316 (2009).
-
(2009)
PLoS Comput Biol
, vol.5
, pp. e1000316
-
-
Fong, J.H.1
-
7
-
-
84861512163
-
Intrinsically disordered proteins and novel strategies for drug discovery
-
Uversky, V. N. Intrinsically disordered proteins and novel strategies for drug discovery. Expert Opin Drug Discov 7, 475-488 (2012).
-
(2012)
Expert Opin Drug Discov
, vol.7
, pp. 475-488
-
-
Uversky, V.N.1
-
8
-
-
84861304475
-
Recent progress in NMR spectroscopy: Toward the study of intrinsically disordered proteins of increasing size and complexity
-
Felli, I. C. & Pierattelli, R. Recent progress in NMR spectroscopy: Toward the study of intrinsically disordered proteins of increasing size and complexity. IUBMB Life 64, 473-481 (2012).
-
(2012)
IUBMB Life
, vol.64
, pp. 473-481
-
-
Felli, I.C.1
Pierattelli, R.2
-
9
-
-
84902446852
-
Short linear motifs: Ubiquitous and functionally diverse protein interaction modules directing cell regulation
-
Van Roey, K. et al. Short linear motifs: ubiquitous and functionally diverse protein interaction modules directing cell regulation. Chem Rev 114, 6733-78 (2014).
-
(2014)
Chem Rev
, vol.114
, pp. 6733-6778
-
-
Van Roey, K.1
-
10
-
-
67650523478
-
Multiple independent binding sites for small-molecule inhibitors on the oncoprotein c-Myc
-
Hammoudeh, D. I., Follis, A. V., Prochownik, E. V. & Metallo, S. J. Multiple independent binding sites for small-molecule inhibitors on the oncoprotein c-Myc. J Am Chem Soc 131, 7390-401 (2009).
-
(2009)
J Am Chem Soc
, vol.131
, pp. 7390-7401
-
-
Hammoudeh, D.I.1
Follis, A.V.2
Prochownik, E.V.3
Metallo, S.J.4
-
11
-
-
0037203771
-
Mutual synergistic folding in recruitment of CBP/p300 by p160 nuclear receptor coactivators
-
Demarest, S. J. et al. Mutual synergistic folding in recruitment of CBP/p300 by p160 nuclear receptor coactivators. Nature 415, 549-53 (2002).
-
(2002)
Nature
, vol.415
, pp. 549-553
-
-
Demarest, S.J.1
-
12
-
-
77957092799
-
Charge interactions can dominate the dimensions of intrinsically disordered proteins
-
Müller-Späth, S. et al. Charge interactions can dominate the dimensions of intrinsically disordered proteins. PNAS 107, 14609-14614 (2010).
-
(2010)
PNAS
, vol.107
, pp. 14609-14614
-
-
Müller-Späth, S.1
-
13
-
-
84878976908
-
Combinatorial Library of Improved Peptide Aptamers (CLIPs) to inhibit RAGE signal transduction in mammalian cells
-
Reverdatto, S. et al. Combinatorial Library of Improved Peptide Aptamers (CLIPs) to inhibit RAGE signal transduction in mammalian cells. PLoS One 8, e65180 (2013).
-
(2013)
PLoS One
, vol.8
, pp. e65180
-
-
Reverdatto, S.1
-
14
-
-
0029876415
-
Genetic selection of peptide aptamers that recognize and inhibit cyclin- dependent kinase 2
-
Colas, P. et al . Genetic selection of peptide aptamers that recognize and inhibit cyclin- dependent kinase 2. Nature 380, 548-50 (1996).
-
(1996)
Nature
, vol.380
, pp. 548-550
-
-
Colas, P.1
-
15
-
-
34147125167
-
Selection and characterization of large collections of peptide aptamers through optimized yeast two- hybrid procedures
-
Bickle, M. B., Dusserre, E., Moncorge, O., Bottin, H. & Colas, P. Selection and characterization of large collections of peptide aptamers through optimized yeast two- hybrid procedures. Nat Protoc 1, 1066-91 (2006).
-
(2006)
Nat Protoc
, vol.1
, pp. 1066-1091
-
-
Bickle, M.B.1
Dusserre, E.2
Moncorge, O.3
Bottin, H.4
Colas, P.5
-
16
-
-
0033982759
-
Combinatorial protein reagents to manipulate protein function
-
Colas, P. Combinatorial protein reagents to manipulate protein function. Curr Opin Chem Biol 4, 54-9 (2000).
-
(2000)
Curr Opin Chem Biol
, vol.4
, pp. 54-59
-
-
Colas, P.1
-
17
-
-
34248177661
-
Investigating macromolecules inside cultured and injected cells by in-cell NMR spectroscopy
-
Serber, Z. et al. Investigating macromolecules inside cultured and injected cells by in-cell NMR spectroscopy. Nat Protoc 1, 2701-9 (2006).
-
(2006)
Nat Protoc
, vol.1
, pp. 2701-2709
-
-
Serber, Z.1
-
18
-
-
59849113286
-
Protein nuclear magnetic resonance under physiological conditions
-
Pielak, G. J. et al. Protein nuclear magnetic resonance under physiological conditions. Biochemistry 48, 226-34 (2009).
-
(2009)
Biochemistry
, vol.48
, pp. 226-234
-
-
Pielak, G.J.1
-
19
-
-
80755123408
-
Probing the Interaction of Cisplatin with the Human Copper Chaperone Atox1 by Solution and In-Cell NMR Spectroscopy
-
Arnesano, F. et al. Probing the Interaction of Cisplatin with the Human Copper Chaperone Atox1 by Solution and In-Cell NMR Spectroscopy. J Am Chem Soc 133, 18361-18369 (2011).
-
(2011)
J Am Chem Soc
, vol.133
, pp. 18361-18369
-
-
Arnesano, F.1
-
20
-
-
84903973799
-
Physicochemical properties of cells and their effects on intrinsically disordered proteins (IDPs)
-
Theillet, F. X. et al. Physicochemical properties of cells and their effects on intrinsically disordered proteins (IDPs). Chem Rev 114, 6661-714 (2014).
-
(2014)
Chem Rev
, vol.114
, pp. 6661-6714
-
-
Theillet, F.X.1
-
21
-
-
84879114045
-
Atomic-resolution monitoring of protein maturation in live human cells by NMR
-
Banci, L. et al. Atomic-resolution monitoring of protein maturation in live human cells by NMR. Nat Chem Biol 9, 297-9 (2013).
-
(2013)
Nat Chem Biol
, vol.9
, pp. 297-299
-
-
Banci, L.1
-
22
-
-
31744435251
-
Mapping structural interactions using in-cell NMR spectroscopy (STINT-NMR)
-
Burz, D. S., Dutta, K., Cowburn, D. & Shekhtman, A. Mapping structural interactions using in-cell NMR spectroscopy (STINT-NMR). Nat Methods 3, 91-3 (2006).
-
(2006)
Nat Methods
, vol.3
, pp. 91-93
-
-
Burz, D.S.1
Dutta, K.2
Cowburn, D.3
Shekhtman, A.4
-
23
-
-
34250680620
-
In-cell NMR for protein-protein interactions (STINT-NMR)
-
Burz, D. S., Dutta, K., Cowburn, D. & Shekhtman, A. In-cell NMR for protein-protein interactions (STINT-NMR). Nat Protoc 1, 146-52 (2006).
-
(2006)
Nat Protoc
, vol.1
, pp. 146-152
-
-
Burz, D.S.1
Dutta, K.2
Cowburn, D.3
Shekhtman, A.4
-
24
-
-
56449118262
-
Ubiquitin-like protein involved in the proteasome pathway of Mycobacterium tuberculosis
-
Pearce, M. J., Mintseris, J., Ferreyra, J., Gygi, S. P. & Darwin, K. H. Ubiquitin-like protein involved in the proteasome pathway of Mycobacterium tuberculosis. Science 322, 1104-7 (2008).
-
(2008)
Science
, vol.322
, pp. 1104-1107
-
-
Pearce, M.J.1
Mintseris, J.2
Ferreyra, J.3
Gygi, S.P.4
Darwin, K.H.5
-
25
-
-
68949184714
-
Prokaryotic ubiquitin-like protein pup is intrinsically disordered
-
Chen, X. et al. Prokaryotic ubiquitin-like protein pup is intrinsically disordered. J Mol Biol 392, 208-17 (2009).
-
(2009)
J Mol Biol
, vol.392
, pp. 208-217
-
-
Chen, X.1
-
26
-
-
0348017149
-
The proteasome of Mycobacterium tuberculosis is required for resistance to nitric oxide
-
Darwin, K. H., Ehrt, S., Gutierrez-Ramos, J. C., Weich, N. & Nathan, C. F. The proteasome of Mycobacterium tuberculosis is required for resistance to nitric oxide. Science 302, 1963-6 (2003).
-
(2003)
Science
, vol.302
, pp. 1963-1966
-
-
Darwin, K.H.1
Ehrt, S.2
Gutierrez-Ramos, J.C.3
Weich, N.4
Nathan, C.F.5
-
27
-
-
70349658267
-
Inhibitors selective for mycobacterial versus human proteasomes
-
Lin, G. et al. Inhibitors selective for mycobacterial versus human proteasomes. Nature 461, 621-6 (2009).
-
(2009)
Nature
, vol.461
, pp. 621-626
-
-
Lin, G.1
-
28
-
-
33645053287
-
Structure of the Mycobacterium tuberculosis proteasome and mechanism of inhibition by a peptidyl boronate
-
Hu, G. et al. Structure of the Mycobacterium tuberculosis proteasome and mechanism of inhibition by a peptidyl boronate. Mol Microbiol 59, 1417-28 (2006).
-
(2006)
Mol Microbiol
, vol.59
, pp. 1417-1428
-
-
Hu, G.1
-
29
-
-
84899629961
-
Using singular value decomposition to characterize protein-protein interactions by in-cell NMR spectroscopy
-
Majumder, S., DeMott, C. M., Burz, D. S. & Shekhtman, A. Using singular value decomposition to characterize protein-protein interactions by in-cell NMR spectroscopy. Chembiochem 15, 929-33 (2014).
-
(2014)
Chembiochem
, vol.15
, pp. 929-933
-
-
Majumder, S.1
DeMott, C.M.2
Burz, D.S.3
Shekhtman, A.4
-
30
-
-
78549254832
-
Binding-induced folding of prokaryotic ubiquitin-like protein on the Mycobacterium proteasomal ATPase targets substrates for degradation
-
Wang, T., Darwin, K. H. & Li, H. Binding-induced folding of prokaryotic ubiquitin-like protein on the Mycobacterium proteasomal ATPase targets substrates for degradation. Nat Struct Mol Biol 17, 1352-7 (2010).
-
(2010)
Nat Struct Mol Biol
, vol.17
, pp. 1352-1357
-
-
Wang, T.1
Darwin, K.H.2
Li, H.3
-
31
-
-
33751110205
-
Identification of substrates of the Mycobacterium tuberculosis proteasome
-
Pearce, M. J. et al. Identification of substrates of the Mycobacterium tuberculosis proteasome. EMBO J 25, 5423-32 (2006).
-
(2006)
EMBO J
, vol.25
, pp. 5423-5432
-
-
Pearce, M.J.1
-
32
-
-
0042825331
-
A family of acr-coregulated Mycobacterium tuberculosis genes shares a common DNA motif and requires Rv3133c (dosR or devR) for expression
-
Florczyk, M. A. et al. A family of acr-coregulated Mycobacterium tuberculosis genes shares a common DNA motif and requires Rv3133c (dosR or devR) for expression. Infect Immun 71, 5332-43 (2003).
-
(2003)
Infect Immun
, vol.71
, pp. 5332-5343
-
-
Florczyk, M.A.1
-
33
-
-
0034114442
-
Attenuation of and Protection Induced by a Leucine Auxotroph of Mycobacterium tuberculosis
-
Hondalus, M. K. et al. Attenuation of and Protection Induced by a Leucine Auxotroph of Mycobacterium tuberculosis. Infection and Immunity 68, 2888-2898 (2000).
-
(2000)
Infection and Immunity
, vol.68
, pp. 2888-2898
-
-
Hondalus, M.K.1
-
34
-
-
0032404491
-
The impact of two-hybrid and related methods on biotechnology
-
Colas, P. & Brent, R. The impact of two-hybrid and related methods on biotechnology. Trends Biotechnol 16, 355-63 (1998).
-
(1998)
Trends Biotechnol
, vol.16
, pp. 355-363
-
-
Colas, P.1
Brent, R.2
-
35
-
-
80052798717
-
In-cell NMR spectroscopy
-
Maldonado, A. Y., Burz, D. S. & Shekhtman, A. In-cell NMR spectroscopy. Prog Nucl Magn Reson Spectrosc 59, 197-212 (2011).
-
(2011)
Prog Nucl Magn Reson Spectrosc
, vol.59
, pp. 197-212
-
-
Maldonado, A.Y.1
Burz, D.S.2
Shekhtman, A.3
-
36
-
-
33646893689
-
Identifying off-target effects and hidden phenotypes of drugs in human cells
-
MacDonald, M. L. et al. Identifying off-target effects and hidden phenotypes of drugs in human cells. Nat Chem Biol 2, 329-37 (2006).
-
(2006)
Nat Chem Biol
, vol.2
, pp. 329-337
-
-
MacDonald, M.L.1
-
37
-
-
77955044557
-
Macromolecular crowding remodels the energy landscape of a protein by favoring a more compact unfolded state
-
Hong, J. & Gierasch, L. M. Macromolecular crowding remodels the energy landscape of a protein by favoring a more compact unfolded state. J Am Chem Soc 132, 10445-52 (2010).
-
(2010)
J Am Chem Soc
, vol.132
, pp. 10445-10452
-
-
Hong, J.1
Gierasch, L.M.2
-
38
-
-
14844294424
-
Protein production by auto-induction in high density shaking cultures
-
Studier, F. W. Protein production by auto-induction in high density shaking cultures. Protein Expr Purif 41, 207-34 (2005).
-
(2005)
Protein Expr Purif
, vol.41
, pp. 207-234
-
-
Studier, F.W.1
-
39
-
-
0028073893
-
Formation of a native-like subdomain in a partially folded intermediate of bovine pancreatic trypsin inhibitor
-
Staley, J. P. & Kim, P. S. Formation of a native-like subdomain in a partially folded intermediate of bovine pancreatic trypsin inhibitor. Protein Sci 3, 1822-32 (1994).
-
(1994)
Protein Sci
, vol.3
, pp. 1822-1832
-
-
Staley, J.P.1
Kim, P.S.2
-
41
-
-
33744991036
-
SideLink: Automated side-chain assignment of biopolymers from NMR data by relative-hypothesis-prioritization-based simulated logic
-
Masse, J. E., Keller, R. &Pervushin, K. SideLink: automated side-chain assignment of biopolymers from NMR data by relative-hypothesis-prioritization-based simulated logic. J Magn Reson 181, 45-67 (2006).
-
(2006)
J Magn Reson
, vol.181
, pp. 45-67
-
-
Masse, J.E.1
Keller, R.2
Pervushin, K.3
-
42
-
-
84883771864
-
Fate of Pup inside the Mycobacterium proteasome studied by in-cell NMR
-
Maldonado, A. Y., Burz, D. S., Reverdatto, S. & Shekhtman, A. Fate of Pup inside the Mycobacterium proteasome studied by in-cell NMR. PLoS One 8, e74576 (2013).
-
(2013)
PLoS One
, vol.8
, pp. e74576
-
-
Maldonado, A.Y.1
Burz, D.S.2
Reverdatto, S.3
Shekhtman, A.4
-
43
-
-
0030457156
-
Localizing the NADP+ binding site on the MurB enzyme by NMR
-
nd et al. Localizing the NADP+ binding site on the MurB enzyme by NMR. Nat Struct Biol 3, 995-7 (1996).
-
(1996)
Nat Struct Biol
, vol.3
, pp. 995-997
-
-
Farmer, B.T.1
-
44
-
-
0031866842
-
The use of nitric oxide donors in pharmacological studies
-
Feelisch, M. The use of nitric oxide donors in pharmacological studies. Naunyn Schmiedebergs Arch Pharmacol 358, 113-22 (1998).
-
(1998)
Naunyn Schmiedebergs Arch Pharmacol
, vol.358
, pp. 113-122
-
-
Feelisch, M.1
-
45
-
-
49649114605
-
Protein structure modeling with MODELLER
-
Eswar, N., Eramian, D., Webb, B., Shen, M. Y. & Sali, A. Protein structure modeling with MODELLER. Methods Mol Biol 426, 145-59 (2008).
-
(2008)
Methods Mol Biol
, vol.426
, pp. 145-159
-
-
Eswar, N.1
Eramian, D.2
Webb, B.3
Shen, M.Y.4
Sali, A.5
-
46
-
-
0025275014
-
Functional analysis of pAL5000, a plasmid from Mycobacterium fortuitum: Construction of a "mini" mycobacterium-Escherichia coli shuttle vector
-
Ranes, M. G., Rauzier, J., Lagranderie, M., Gheorghiu, M.& Gicquel, B. Functional analysis of pAL5000, a plasmid from Mycobacterium fortuitum: construction of a "mini" mycobacterium-Escherichia coli shuttle vector. J Bacteriol 172, 2793-7 (1990).
-
(1990)
J Bacteriol
, vol.172
, pp. 2793-2797
-
-
Ranes, M.G.1
Rauzier, J.2
Lagranderie, M.3
Gheorghiu, M.4
Gicquel, B.5
|