Determination of HLA-A, -C, -B, -DRB1 allele and haplotype frequency in Japanese population based on family study

Tissue Antigens

Volumn 85, Issue 4, 2015, Pages 252-259

  Ikeda, N ^a   Kojima, H ^a   Nishikawa, M ^a   Hayashi, K ^a   Futagami, T ^a   Tsujino, T ^a   Kusunoki, Y ^a   Fujii, N ^a   Suegami, S ^a   Miyazaki, Y ^a   Middleton, D ^b   Tanaka, H ^a   Saji, H ^a  

^a Japanese Red Cross Kanto Koshinetsu Block Blood Center   (Japan)

^b ROYAL LIVERPOOL UNIVERSITY HOSPITAL   (United Kingdom)

Author keywords

Allele frequency; Family study; Haplotype frequency; Human leucocyte antigen; Japanese population

Indexed keywords

HLA A ANTIGEN; HLA B ANTIGEN; HLA C ANTIGEN; HLA DRB1 ANTIGEN; HLA DQ ANTIGEN;

ALLELISM; ARTICLE; FAMILY STUDY; GENE FREQUENCY; GENE LINKAGE DISEQUILIBRIUM; GENE SEGREGATION; HAPLOTYPE; HUMAN; HUMAN CELL; JAPANESE (PEOPLE); MAXIMUM LIKELIHOOD METHOD; PRIORITY JOURNAL; SEROLOGY; ADULT; ALLELE; ASIAN CONTINENTAL ANCESTRY GROUP; CHILD; DONOR; FAMILY; FEMALE; GENE EXPRESSION; GENETICS; HISTOCOMPATIBILITY TEST; IMMUNOLOGY; MALE; PEDIGREE; STATISTICAL MODEL;

ADULT; ALLELES; ASIAN CONTINENTAL ANCESTRY GROUP; CHILD; FAMILY; FEMALE; GENE EXPRESSION; GENE FREQUENCY; HAPLOTYPES; HISTOCOMPATIBILITY TESTING; HLA-A ANTIGENS; HLA-B ANTIGENS; HLA-C ANTIGENS; HLA-DQ ANTIGENS; HLA-DRB1 CHAINS; HUMANS; LIKELIHOOD FUNCTIONS; LINKAGE DISEQUILIBRIUM; MALE; PEDIGREE; TISSUE DONORS;

EID: 84925271139     PISSN: 00012815     EISSN: 13990039     Source Type: Journal    
DOI: 10.1111/tan.12536     Document Type: Article

References (33)

1. Cao K, Hollenbach J, Shi X et al. Analysis of the frequencies of HLA-A, B, and C alleles and haplotypes in the five major ethnic groups of the United States reveals high levels of diversity in these loci and contrasting distribution patterns in these populations. Hum Immunol 2001: 62: 1009-30.
2. Imanishi T, Wakisaka A, Gojobori T. Genetic relationships among various human populations indicated by MHC polymorphisms. In: Tsuji K, Aizawa M, Sasazuki T, eds. HLA 1991. Oxford: Oxford University Press, 1992, 627-32.
3. Lee SJ, Klein J, Haagenson M et al. High-resolution donor-recipient HLA matching contributes to the success of unrelated donor marrow transplantation. Blood 2007a: 110: 4576-83.
4. Horan J, Wang T, Haagenson M et al. Evaluation of HLA matching in unrelated hematopoietic stem cell transplantation for nonmalignant disorders. Blood 2012: 120: 2918-24.
5. Morishima S, Ogawa S, Matsubara A et al. Impact of highly conserved HLA haplotype on acute graft-versus-host disease. Blood 2010: 115: 4664-70.
6. Nakaoka H, Mitsunaga S, Hosomichi K et al. Detection of ancestry informative HLA alleles confirms the admixed origins of Japanese population. PLoS One 2013: 8: e60793.
7. Tokunaga K, Ishikawa Y, Ogawa A et al. Sequence-based association analysis of HLA class I and II alleles in Japanese supports conservation of common haplotypes. Immunogenetics 1997: 46: 199-205.
8. Saito S, Ota S, Yamada E, Inoko H, Ota M. Allele frequencies and haplotypic associations defined by allelic DNA typing at HLA class I and class II loci in the Japanese population. Tissue Antigens 2000: 56: 522-9.
9. Moriyama Y, Kato K, Mura T, Juji T. Analysis of HLA gene frequencies and HLA haplotype frequencies for bone marrow donors in Japan. MHC 2006: 12: 183-201.
10. Ogata S, Shi L, Matsushita M et al. Polymorphisms of human leucocyte antigen genes in Maonan people in China. Tissue Antigens 2007: 69: 154-60.
11. Yao Y, Shi L, Shi L et al. Distribution of HLA-A, -B, -Cw, and -DRB1 alleles and haplotypes in an isolated Han population in Southwest China. Tissue Antigens 2009: 73: 561-8.
12. Shi L, Yao YF, Shi L et al. HLA alleles and haplotypes distribution in Dai population in Yunnan province, Southwest China. Tissue Antigens 2010: 75: 159-65.
13. Shichi D, Kikkawa EF, Ota M et al. The haplotype block, NFKBIL1-ATP6V1G2-BAT1-MICB-MICA, within the class III - class I boundary region of the human major histocompatibility complex may control susceptibility to hepatitis C virus-associated dilated cardiomyopathy. Tissue Antigens 2005: 66: 200-8.
14. Kamatani Y, Wattanapokayakit S, Ochi H et al. A genome-wide association study identifies variants in the HLA-DP locus associated with chronic hepatitis B in Asians. Nat Genet 2009: 41: 591-5.
15. Zhao H, Qi Y, Wang Y et al. Interactive contribution of serine/threonine kinase 39 gene multiple polymorphisms to hypertension among northeastern Han Chinese. Sci Rep 2014: 4: 5116.
16. Wang ZT, Hu JJ, Fan R, Zhou J, Zhong J. RAGE gene three polymorphisms with Crohn's disease susceptibility in Chinese Han population. World J Gastroenterol 2014: 20: 2397-402.
17. Lewontin RC. The Interaction of Selection and Linkage. I. General Considerations; Heterotic Models. Genetics 1964: 49: 49-67.
18. Hedrick PW. Gametic disequilibrium measures: proceed with caution. Genetics 1987: 117: 331-41.
19. Raymond M, Rousset F. GENEPOP (version 1.2): population genetics software for exact tests and ecumenicism. Heredity 1995: 86: 248-9.
20. Rousset F. GENEPOP'007: a complete re-implementation of the GENEPOP software for Windows and Linux. Mol Ecol 2007: 8: 103-6.
21. Marsh SGE, Albert ED, Bodmer WF et al. Nomenclature for factors of the HLA system, 2010. Tissue Antigens 2010: 75: 291-455.
22. Gonzalez-Galarza FF, Christmas S, Middleton D, Jones AR. Allele frequency net: A database and online repository for immune gene frequencies in worldwide populations. Nucleic Acids Res 2011: 39: D913-9.
23. Tsuboi A, Oka Y, Udaka K et al. Enhanced induction of human WT1-specific cytotoxic T lymphocytes with a 9-mer WT1 peptide modified at HLA-A*2402-binding residues. Cancer Immunol Immunother 2002: 51: 614-20.
24. Oka Y, Tsuboi A, Taguchi T et al. Induction of WT1 (Wilms' tumor gene)-specific cytotoxic T lymphocytes by WT1 peptide vaccine and the resultant cancer regression. Proc Natl Acad Sci U S A 2004: 101: 13885-90.
25. Kaida M, Morita-Hoshi Y, Soeda A et al. Phase 1 trial of Wilms tumor 1 (WT1) peptide vaccine and gemcitabine combination therapy in patients with advanced pancreatic or biliary tract cancer. J Immunother 2011: 34: 92-9.
26. Ohno S, Okuyama R, Aruga A, Sugiyama H, Yamamoto M. Phase I trial of Wilms' Tumor 1 (WT1) peptide vaccine with GM-CSF or CpG in patients with solid malignancy. Anticancer Res 2012: 32: 2263-9.
27. Lee KW, Oh DH, Lee C, Yang SY. Allelic and haplotypic diversity of HLA-A, -B, -C, -DRB1, and -DQB1 genes in the Korean population. Tissue Antigens 2005: 65: 437.
28. Yang G, Deng YJ, Hu SN et al. HLA-A, -B, and -DRB1 polymorphism defined by sequence based typing of the Han population in Northern China. Tissue Antigens 2006: 67: 146-52.
29. Chen S, Hu Q, Xie Y et al. Origin of Tibeto-Burman speakers: evidence from HLA allele distribution in Lisu and Nu inhabiting Yunnan of China. Hum Immunol 2007: 68: 550-9.
30. Lai MJ, Wen SH, Lin YH et al. Distributions of human leukocyte antigen-A, -B, and -DRB1 alleles and haplotypes based on 46, 915 Taiwanese donors. Hum Immunol 2010: 71: 777-82.
31. Wen SH, Lai MJ, Yang KL. Human leukocyte antigen-A, -B, and -DRB1 haplotypes of cord blood units in the Tzu Chi Taiwan Cord Blood Bank. Hum Immunol 2008: 69: 430-6.
32. Flomenberg N, Baxter-Lowe LA, Confer D et al. Impact of HLA class I and class II high-resolution matching on outcomes of unrelated donor bone marrow transplantation: HLA-C mismatching is associated with a strong adverse effect on transplantation outcome. Blood 2004: 104: 1923-30.
33. Kanda Y, Kanda J, Atsuta Y et al. Impact of a single human leucocyte antigen (HLA) allele mismatch on the outcome of unrelated bone marrow transplantation over two time periods. A retrospective analysis of 3003 patients from the HLA Working Group of the Japan Society for Blood and Marrow Transplantation. Br J Haematol 2013: 161: 566-77.