HLA alleles and haplotypes distribution in Dai population in Yunnan province, Southwest China

Tissue Antigens

Volumn 75, Issue 2, 2010, Pages 159-165

  Shi, L ^a,a   Yao, Y F ^a   Matsushita, M ^b   Yu, L ^a   Lin, Q K ^a   Tao, Y F ^a   Oka, T ^b   Chu, J Y ^a   Tokunaga, K ^c  

^a INSTITUTE OF MEDICAL BIOLOGY   (China)

^b WAKUNAGA PHARMACEUTICAL CO LTD   (Japan)

^c UNIVERSITY OF TOKYO   (Japan)

Author keywords

Dai population; Haplotypes; Human leukocyte antigen alleles

Indexed keywords

HLA A ANTIGEN; HLA B ANTIGEN; HLA C ANTIGEN; HLA DR ANTIGEN;

ARTICLE; CHINA; CHINESE; ETHNIC GROUP; HAPLOTYPE; HLA SYSTEM; HUMAN; MAJOR CLINICAL STUDY; MINORITY GROUP; PRIORITY JOURNAL;

ALLELES; ASIA, SOUTHEASTERN; CHINA; DATA COLLECTION; ETHNIC GROUPS; HAPLOTYPES; HLA ANTIGENS; HLA-A ANTIGENS; HLA-B ANTIGENS; HLA-C ANTIGENS; HLA-DR ANTIGENS; HUMANS; POPULATION GROUPS; THAILAND;

EID: 73949156876     PISSN: 00012815     EISSN: 13990039     Source Type: Journal    
DOI: 10.1111/j.1399-0039.2009.01407.x     Document Type: Article

References (47)

1. Tokunaga K, Imanishi T, Takahashi K, Juji T. On the origin and dispersal of East Asian populations as viewed from HLA haplotypes. In: Akazawa T, Szathmary EJ, eds. Prehistoric Mongoloid Dispersals. Oxford : Oxford University, 1996, 187 197.
2. Tokunaga K, Ishikawa Y, Ogawa A et al. Sequence-based association analysis of HLA class I and II alleles in Japanese supports conservation of common haplotypes. Immunogenetics 1997 : 46 : 199 205.
3. Fan L, Chandanayingyong D, Smith AG, Hansen JA. The Dai minority population of southwest China: heterogeneity of DR2-associated HLA-DRB1, DRB5, DQA1, and DQB1 haplotypes. Hum Immunol 1996 : 45 : 143 147.
4. Fan LA, Yang YQ, Dong JZ et al. HLA class II oligonucleotide typing of a DAI minority population in xishuangbanna of China. Chin J Immunol 1992 : 8 : 287 290.
5. Ogata S, Shi L, Matsushita M et al. Polymorphisms of human leucocyte antigen genes in Maonan people in China. Tissue Antigens 2007 : 69 : 154 160.
6. Shi L, Ogata S, Yu JK et al. Distribution of HLA alleles and haplotypes in Jinuo and Wa populations in Southwest China. Hum Immunol 2008 : 69 : 58 65.
7. Yao Y, Shi L, Shi L et al. Distribution of HLA-A, -B, -Cw, and -DRB1 alleles and haplotypes in an isolated Han population in Southwest China. Tissue Antigens 2009 : 73 : 561 568.
8. Lancaster A, Nelson MP, Meyer D, Thomson G, Single RM. PyPop: a software framework for population genomics: analyzing large-scale multi-locus genotype data. Pac Symp Biocomput 2003 : 8 : 514 525.
9. Lancaster AK, Single RM, Solberg OD, Nelson MP, Thomson G. PyPop update-a software pipeline for large-scale multilocus population genomics. Tissue Antigens 2007 : 69 (Suppl 1 192 197.
10. Guo SW, Thompson EA. Performing the exact test of Hardy-Weinberg proportion for multiple alleles. Biometrics 1992 : 48 : 361 372.
11. Ewens WJ. The sampling theory of selectively neutral alleles. Theor Popul Biol 1972 : 3 : 87 112.
12. Watterson GA. The homozygosity test of neutrality. Genetics 1978 : 88 : 405 417.
13. Meyer D, Thomson G. How selection shapes variation of the human major histocompatibility complex: a review. Ann Hum Genet 2001 : 65 : 1 26.
14. Trachtenberg E, Vinson M, Hayes E et al. HLA class I (A, B, C) and class II (DRB1, DQA1, DQB1, DPB1) alleles and haplotypes in the Han from southern China. Tissue Antigens 2007 : 70 : 455 463.
15. Tamura K, Dudley J, Nei M, Kumar S. MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol Biol Evol 2007 : 24 : 1596 1599.
16. Chen S, Ren X, Liu Y, Hu Q, Hong W, Xu A. Human leukocyte antigen class I polymorphism in Miao, Bouyei, and Shui ethnic minorities of Guizhou, China. Hum Immunol 2007 : 68 : 928 933.
17. Imanishi T, Akaza T, Kimura A, Tokunaga K, Gojobori T. Allele and haplotype frequencies for HLA and complement loci in various ethnic groups. In: Tsuji K, Aizawa M, Sasazuki T, eds. HLA 1991 Proceedings of the Eleventh International Histocompatibility Workshop and Conference. Oxford : Oxford University Press, 1992, 1065 1220.
18. Liu Y, Liu Z, Fu Y, Jia Z, Chen S, Xu A. Polymorphism of HLA class II genes in Miao and Yao nationalities of Southwest China. Tissue Antigens 2006 : 67 : 157 159.
19. Hoa BK, Hang NT, Kashiwase K et al. HLA-A, -B, -C, -DRB1 and -DQB1 alleles and haplotypes in the Kinh population in Vietnam. Tissue Antigens 2008 : 71 : 127 134.
20. Chandanayingyong D, Stephens HA, Klaythong R et al. HLA-A, -B, -DRB1, -DQA1, and -DQB1 polymorphism in Thais. Hum Immunol 1997 : 53 : 174 182.
21. Meyer D, Singe RM, Mack SJ et al. Single locus polymorphism of classical HLA genes. In: Hansen JA, ed. Immunobiology of the Human MHC: Proceedings of the 13th International Histocompatibility Workshop and Conference. Seattle, WA : IHWG Press, 2007, 653 704.
22. Middleton D, Hawkins BR, Williams F et al. HLA class I allele distribution of a Hong Kong Chinese population based on high-resolution PCR-SSOP typing. Tissue Antigens 2004 : 63 : 555 561.
23. Wen SH, Lai MJ, Yang KL. Human leukocyte antigen-A, -B, and -DRB1 haplotypes of cord blood units in the Tzu Chi Taiwan Cord Blood Bank. Hum Immunol 2008 : 69 : 430 436.
24. Hardy S, Siauw PA, Scotland R et al. Chinese Hong Kong normal. In: Gjertson DW, Terasaki PI, eds. HLA 1997 : Los Angeles : UCLA Tissue Typing Laboratory, 1997, 261.
25. Zhang HB, Gao F, Kang LL, Li SB. Determination of HLA-A, B, and DRB1 gene polymorphism in Monba ethnic group of Xizang Autonomous Region, China (In Chinese). Chin J Med Genet 2005 : 22 : 344 346
26. Chen S, Hong W, Shao H et al. Allelic distribution of HLA class I genes in the Tibetan ethnic population of China. Int J Immunogenet 2006 : 33 : 439 445.
27. Lai SP, Ren HM, Hu HT et al. HLA-DRB alleles polymorphism in Han, Hui, Uygur and Tibetan populations in Northwestern China (In Chinese). Acta Genetica Sinaca 1999 : 26 : 447 457.
28. Hong W, Chen S, Shao H, Fu Y, Hu Z, Xu A. HLA class I polymorphism in Mongolian and Hui ethnic groups from Northern China. Hum Immunol 2007 : 68 : 439 448.
29. Yu HL, Dai GY, Xia YZ. Investigation of the polymorphism of HLA-DRB1 alleles in minority and Han nationality in inner Mongolia (In Chinese). Acta Acad Med Nei Mongol 2002 : 24 : 226 228.
30. Deng YJ, Yang G, Wu DY et al. Study on the HLA-DRB1 polymorphism determined by high-resolution PCR-SBT in a population of Beijing Region. J Forensic Med 2005 : 21 : 280 285.
31. Sun X, Sun Y, Gao X. Diversity of HLA class I genes in northern and southern Chinese. In: Charron D, ed. HLA Genetic Diversity of HLA Functional and Medical Implication. Paris : EDK, 1997, 155 157.
32. Yang G, Deng YJ, Hu SN et al. HLA-A, -B, and -DRB1 polymorphism defined by sequence-based typing of the Han population in Northern China. Tissue Antigens 2006 : 67 : 146 152.
33. Lee KW, Oh DH, Lee C, Yang SY. Allelic and haplotypic diversity of HLA-A, -B, -C, -DRB1, and -DQB1 genes in the Korean population. Tissue Antigens 2005 : 65 : 437 447.
34. Mitsunaga S, Oguchi T, Moriyama S et al. Multiplex ARMS-PCR-RFLP method for high-resolution typing of HLA-DRB1. Eur J Immunogenet 1995 : 22 : 371 392.
35. Lee J, Balazs I. Taiwanese normal and Chinese normal. In: Gjertson DW, Terasaki PI, eds. HLA 1997. Los Angeles : UCLA Tissue Typing Laboratory, 1997, 265.
36. Tanaka H, Tokunaga K, Inoko H et al. Distribution of HLA-A, B, and DRB1 alleles and haplotypes in Northeast Asia. In: Charron D, ed. HLA Genetic Diversity of HLA Functional and Medical Implication. Paris : EDK, 1997, 285 291.
37. Shi L, Xu SB, Ohashi J et al. HLA-A, HLA-B, and HLA-DRB1 alleles and haplotypes in Naxi and Han populations in southwestern China (Yunnan province). Tissue Antigens 2006 : 67 : 38 44.
38. Chandanayingyong D. Thai Black, Thai Dai Lue, Thai Normal. In: David WG, Terasaki PI, eds. HLA 1998. Lenexa : American Society for Histocompatibility and Immunogenetics, 1997, 308 313.
39. Shaw CK, Chen LL, Lee A, Lee TD. Distribution of HLA gene and haplotype frequencies in Taiwan: a comparative study among Min-nan, Hakka, Aborigines and Mainland Chinese. Tissue Antigens 1999 : 53 : 51 64.
40. Ferencik S, Gong F. Wuhan Han H. In: Gjertson DW, Terasaki PI, eds. HLA 1997 : Los Angeles : UCLA Tissue Typing Laboratory, 1997, 202 203.
41. Chu JY, Huang W, Kuang SQ et al. Genetic relationship of populations in China. Proc Natl Acad Sci USA 1998 : 95 : 11763 11768.
42. Su B, Xiao J, Underhill P et al. Y-Chromosome evidence for a northward migration of modern humans into Eastern Asia during the last Ice Age. Am J Hum Genet 1999 : 65 : 1718 1724.
43. Yao YG, Nie L, Harpending H, Fu YX, Yuan ZG, Zhang YP. Genetic relationship of Chinese ethnic populations revealed by mtDNA sequence diversity. Am J Phys Anthropol 2002 : 118 : 63 76.
44. Tian C, Kosoy R, Lee A et al. Analysis of East Asia genetic substructure using genome-wide SNP arrays. PLoS ONE 2008 : 3 : e3862.
45. Liu Y. Daizu. In: Guo J, Duan YM, Yang FQ, eds. Summarization of Yunnan Ethnic Nationalities (Yunnan Shaoshuminzu Gailan). Kunming : Yunnan People's Publishing House, 1999, 202 247.
46. You Z. History of Yunnan Nationalities. Kunming : Yunnan University Press, 1994.
47. Stephens HA, Chandanayingyong D, Kunachiwa W et al. A comparison of molecular HLA-DR and DQ allele profiles forming DR51-, DR52-, and DR53-related haplotypes in five ethnic Thai populations from mainland southeast Asia. Hum Immunol 2000 : 61 : 1039 1047.