It is easy to get huge candidate gene lists for plant metabolism now, but how to get beyond?

Molecular Plant

Volumn 8, Issue 1, 2015, Pages 2-5

  Goossens, Alain ^a,b  

^a DEPARTMENT OF PLANT SYSTEMS BIOLOGY   (Belgium)

^b GHENT UNIVERSITY   (Belgium)

Author keywords

[No Author keywords available]

Indexed keywords

PROTEIN BINDING;

GENETICS; METABOLISM; MULTIGENE FAMILY; PLANT; PLANT GENOME;

GENOME, PLANT; MULTIGENE FAMILY; PLANTS; PROTEIN BINDING;

EID: 84925134466     PISSN: 16742052     EISSN: 17529867     Source Type: Journal    
DOI: 10.1016/j.molp.2014.08.001     Document Type: Short Survey

References (14)

1. J.E. Bassard, L. Richert, J. Geerinck, H. Renault, F. Duval, P. Ullmann, M. Schmitt, E. Meyer, J. Mutterer, and W. Boerjan Protein-protein and protein-membrane associations in the lignin pathway Plant Cell 24 2012 4465 4482
2. M.E. Bolger, B. Weisshaar, U. Scholz, N. Stein, B. Usadel, and K.F.X. Mayer Plant genome sequencing - applications for crop improvement Curr. Opin. Biotechnol. 26 2014 31 37
3. N. De Geyter, A. Gholami, S. Goormachtig, and A. Goossens Transcriptional machineries in jasmonate-elicited plant secondary metabolism Trends Plant Sci. 17 2012 349 359
4. A. Fukushima, M. Kusano, R.F. Mejia, M. Iwasa, M. Kobayashi, N. Hayashi, A. Watanabe-Takahashi, T. Narisawa, T. Tohge, and M. Hur Metabolomic characterization of knock-out mutants in Arabidopsis - development of a metabolite profiling database for knock-out mutants in Arabidopsis Plant Physiol. 165 2014 948 961
5. M. Itkin, U. Heinig, O. Tzfadia, A.J. Bhide, B. Shinde, P.D. Cardenas, S.E. Bocobza, T. Unger, S. Malitsky, and R. Finkers Biosynthesis of antinutritional alkaloids in solanaceous crops is mediated by clustered genes Science 341 2013 175 179
6. M. Itkin, I. Rogachev, N. Alkan, T. Rosenberg, S. Malitsky, L. Masini, S. Meir, Y. Iijima, K. Aoki, and R. De Vos GLYCOALKALOID METABOLISM1 is required for steroidal alkaloid glycosylation and prevention of phytotoxicity in tomato Plant Cell 23 2011 4507 4525
7. S. Kueger, D. Steinhauser, L. Willmitzer, and P. Giavalisco High-resolution plant metabolomics: from mass spectral features to metabolites and from whole-cell analysis to subcellular metabolite distributions Plant J. 70 2012 39 50
8. K. Miettinen, L. Dong, N. Navrot, T. Schneider, V. Burlat, J. Pollier, L. Woittiez, S. van der Krol, R. Lugan, and T. Ilc The seco-iridoid pathway from Catharanthus roseus Nat. Commun. 5 2014 3606
9. M. Morita, N. Shitan, K. Sawada, M.C.E. Van Montagu, D. Inzé, H. Rischer, A. Goossens, K.M. Oksman-Caldentey, Y. Moriyama, and K. Yazaki Vacuolar transport of nicotine is mediated by a multidrug and toxic compound extrusion (MATE) transporter in Nicotiana tabacum Proc. Natl. Acad. Sci. U S A 106 2009 2447 2452
10. H.W. Nützmann, and A. Osbourn Gene clustering in plant specialized metabolism Curr. Opin. Biotechnol. 26 2014 91 99
11. A. Oikawa, and K. Saito Metabolite analyses of single cells Plant J. 70 2012 30 38
12. J. Pollier, T. Moses, M. González-Guzmán, N. De Geyter, S. Lippens, R. Vanden Bossche, P. Marhavý, A. Kremer, K. Morreel, and C.J. Guérin The protein quality control system manages plant defense compound synthesis Nature 504 2013 148 152
13. A. Van Moerkercke, M. Fabris, J. Pollier, G.J.E. Baart, S. Rombauts, G. Hasnain, H. Rischer, J. Memelink, K.M. Oksman-Caldentey, and A. Goossens CathaCyc, a metabolic pathway database built from Catharanthus roseus RNA-Seq data Plant Cell Physiol. 54 2013 673 685
14. M. Xiao, Y. Zhang, X. Chen, E.J. Lee, C.J.S. Barber, R. Chakrabarty, I. Desgagné-Penix, T.M. Haslam, Y.B. Kim, and E. Liu Transcriptome analysis based on next-generation sequencing of non-model plants producing specialized metabolites of biotechnological interest J. Biotechnol. 166 2013 122 134