메뉴 건너뛰기




Volumn 57, Issue 6, 2015, Pages 1099-1109

The Ubiquitous yybP-ykoY Riboswitch Is a Manganese-Responsive Regulatory Element

Author keywords

[No Author keywords available]

Indexed keywords

LIGAND; MANGANESE; MEMBRANE PROTEIN; 5' UNTRANSLATED REGION; BACTERIAL PROTEIN; BACTERIAL RNA; CARRIER PROTEIN; ESCHERICHIA COLI PROTEIN; FERRIC UPTAKE REGULATING PROTEINS, BACTERIAL; FIMBRIA PROTEIN; FIMG PROTEIN, E COLI; MNTP PROTEIN, E COLI; REGULATORY RNA SEQUENCE; REPRESSOR PROTEIN; RIBOSWITCH;

EID: 84925067688     PISSN: 10972765     EISSN: 10974164     Source Type: Journal    
DOI: 10.1016/j.molcel.2015.01.035     Document Type: Article
Times cited : (108)

References (45)
  • 1
    • 0032531720 scopus 로고    scopus 로고
    • The Escherichia coli OxyS regulatory RNA represses fhlA translation by blocking ribosome binding
    • Altuvia S., Zhang A., Argaman L., Tiwari A., Storz G. The Escherichia coli OxyS regulatory RNA represses fhlA translation by blocking ribosome binding. EMBO J. 1998, 17:6069-6075.
    • (1998) EMBO J. , vol.17 , pp. 6069-6075
    • Altuvia, S.1    Zhang, A.2    Argaman, L.3    Tiwari, A.4    Storz, G.5
  • 2
    • 84868092588 scopus 로고    scopus 로고
    • Ter-dependent stress response systems: novel pathways related to metal sensing, production of a nucleoside-like metabolite, and DNA-processing
    • Anantharaman V., Iyer L.M., Aravind L. Ter-dependent stress response systems: novel pathways related to metal sensing, production of a nucleoside-like metabolite, and DNA-processing. Mol. Biosyst. 2012, 8:3142-3165.
    • (2012) Mol. Biosyst. , vol.8 , pp. 3142-3165
    • Anantharaman, V.1    Iyer, L.M.2    Aravind, L.3
  • 3
    • 0033485460 scopus 로고    scopus 로고
    • DNA-binding proteins and evolution of transcription regulation in the archaea
    • Aravind L., Koonin E.V. DNA-binding proteins and evolution of transcription regulation in the archaea. Nucleic Acids Res. 1999, 27:4658-4670.
    • (1999) Nucleic Acids Res. , vol.27 , pp. 4658-4670
    • Aravind, L.1    Koonin, E.V.2
  • 6
    • 84859915108 scopus 로고    scopus 로고
    • Multiple factors dictate target selection by Hfq-binding small RNAs
    • Beisel C.L., Updegrove T.B., Janson B.J., Storz G. Multiple factors dictate target selection by Hfq-binding small RNAs. EMBO J. 2012, 31:1961-1974.
    • (2012) EMBO J. , vol.31 , pp. 1961-1974
    • Beisel, C.L.1    Updegrove, T.B.2    Janson, B.J.3    Storz, G.4
  • 7
    • 0025409703 scopus 로고
    • Alkaline induction of a novel gene locus, alx, in Escherichia coli
    • Bingham R.J., Hall K.S., Slonczewski J.L. Alkaline induction of a novel gene locus, alx, in Escherichia coli. J.Bacteriol. 1990, 172:2184-2186.
    • (1990) J.Bacteriol. , vol.172 , pp. 2184-2186
    • Bingham, R.J.1    Hall, K.S.2    Slonczewski, J.L.3
  • 8
    • 80052973462 scopus 로고    scopus 로고
    • Prospects for riboswitch discovery and analysis
    • Breaker R.R. Prospects for riboswitch discovery and analysis. Mol. Cell 2011, 43:867-879.
    • (2011) Mol. Cell , vol.43 , pp. 867-879
    • Breaker, R.R.1
  • 11
    • 0037993832 scopus 로고    scopus 로고
    • Transition metal speciation in the cell: insights from the chemistry of metal ion receptors
    • Finney L.A., O'Halloran T.V. Transition metal speciation in the cell: insights from the chemistry of metal ion receptors. Science 2003, 300:931-936.
    • (2003) Science , vol.300 , pp. 931-936
    • Finney, L.A.1    O'Halloran, T.V.2
  • 13
    • 53049094260 scopus 로고    scopus 로고
    • Crystal structure of the lysine riboswitch regulatory mRNA element
    • Garst A.D., Héroux A., Rambo R.P., Batey R.T. Crystal structure of the lysine riboswitch regulatory mRNA element. J.Biol. Chem. 2008, 283:22347-22351.
    • (2008) J.Biol. Chem. , vol.283 , pp. 22347-22351
    • Garst, A.D.1    Héroux, A.2    Rambo, R.P.3    Batey, R.T.4
  • 14
    • 0042952817 scopus 로고    scopus 로고
    • The global transcriptional response of Bacillus subtilis to manganese involves the MntR, Fur, TnrA and sigmaB regulons
    • Guedon E., Moore C.M., Que Q., Wang T., Ye R.W., Helmann J.D. The global transcriptional response of Bacillus subtilis to manganese involves the MntR, Fur, TnrA and sigmaB regulons. Mol. Microbiol. 2003, 49:1477-1491.
    • (2003) Mol. Microbiol. , vol.49 , pp. 1477-1491
    • Guedon, E.1    Moore, C.M.2    Que, Q.3    Wang, T.4    Ye, R.W.5    Helmann, J.D.6
  • 15
    • 13244264715 scopus 로고    scopus 로고
    • Transcriptional regulation of sitABCD of Salmonella enterica serovar Typhimurium by MntR and Fur
    • Ikeda J.S., Janakiraman A., Kehres D.G., Maguire M.E., Slauch J.M. Transcriptional regulation of sitABCD of Salmonella enterica serovar Typhimurium by MntR and Fur. J.Bacteriol. 2005, 187:912-922.
    • (2005) J.Bacteriol. , vol.187 , pp. 912-922
    • Ikeda, J.S.1    Janakiraman, A.2    Kehres, D.G.3    Maguire, M.E.4    Slauch, J.M.5
  • 16
    • 84907820812 scopus 로고    scopus 로고
    • The mismetallzation of enzymes during oxidative stress
    • Imlay J.A. The mismetallzation of enzymes during oxidative stress. J.Biol. Chem 2014, 289:28121-28128.
    • (2014) J.Biol. Chem , vol.289 , pp. 28121-28128
    • Imlay, J.A.1
  • 18
    • 71449123530 scopus 로고    scopus 로고
    • Recognition of the bacterial second messenger cyclic diguanylate by its cognate riboswitch
    • Kulshina N., Baird N.J., Ferré-D'Amaré A.R. Recognition of the bacterial second messenger cyclic diguanylate by its cognate riboswitch. Nat. Struct. Mol. Biol. 2009, 16:1212-1217.
    • (2009) Nat. Struct. Mol. Biol. , vol.16 , pp. 1212-1217
    • Kulshina, N.1    Baird, N.J.2    Ferré-D'Amaré, A.R.3
  • 19
    • 84860231100 scopus 로고    scopus 로고
    • The anti-Shine-Dalgarno sequence drives translational pausing and codon choice in bacteria
    • Li G.W., Oh E., Weissman J.S. The anti-Shine-Dalgarno sequence drives translational pausing and codon choice in bacteria. Nature 2012, 484:538-541.
    • (2012) Nature , vol.484 , pp. 538-541
    • Li, G.W.1    Oh, E.2    Weissman, J.S.3
  • 20
    • 84926292718 scopus 로고    scopus 로고
    • The Escherichia coli protein MntS and exporter MntP collaborate to keep intracellular manganese at sufficient but sub-inhibitory levels
    • Published online March 16, 2015
    • Martin J.E., Waters L.S., Storz G., Imlay J.A. The Escherichia coli protein MntS and exporter MntP collaborate to keep intracellular manganese at sufficient but sub-inhibitory levels. PLoS Genet. 2015, Published online March 16, 2015. 10.1371/journal.pgen.1004977.
    • (2015) PLoS Genet.
    • Martin, J.E.1    Waters, L.S.2    Storz, G.3    Imlay, J.A.4
  • 24
    • 33746008173 scopus 로고    scopus 로고
    • Selective silencing of foreign DNA with low GC content by the H-NS protein in Salmonella
    • Navarre W.W., Porwollik S., Wang Y., McClelland M., Rosen H., Libby S.J., Fang F.C. Selective silencing of foreign DNA with low GC content by the H-NS protein in Salmonella. Science 2006, 313:236-238.
    • (2006) Science , vol.313 , pp. 236-238
    • Navarre, W.W.1    Porwollik, S.2    Wang, Y.3    McClelland, M.4    Rosen, H.5    Libby, S.J.6    Fang, F.C.7
  • 26
    • 84891776041 scopus 로고    scopus 로고
    • Changes in transcriptional pausing modify the folding dynamics of the pH-responsive RNA element
    • Nechooshtan G., Elgrably-Weiss M., Altuvia S. Changes in transcriptional pausing modify the folding dynamics of the pH-responsive RNA element. Nucleic Acids Res. 2014, 42:622-630.
    • (2014) Nucleic Acids Res. , vol.42 , pp. 622-630
    • Nechooshtan, G.1    Elgrably-Weiss, M.2    Altuvia, S.3
  • 27
    • 33750898424 scopus 로고    scopus 로고
    • Escherichia coli histone-like protein H-NS preferentially binds to horizontally acquired DNA in association with RNA polymerase
    • Oshima T., Ishikawa S., Kurokawa K., Aiba H., Ogasawara N. Escherichia coli histone-like protein H-NS preferentially binds to horizontally acquired DNA in association with RNA polymerase. DNA Res. 2006, 13:141-153.
    • (2006) DNA Res. , vol.13 , pp. 141-153
    • Oshima, T.1    Ishikawa, S.2    Kurokawa, K.3    Aiba, H.4    Ogasawara, N.5
  • 28
    • 77956148437 scopus 로고    scopus 로고
    • A bacterial mRNA leader that employs different mechanisms to sense disparate intracellular signals
    • Park S.Y., Cromie M.J., Lee E.J., Groisman E.A. A bacterial mRNA leader that employs different mechanisms to sense disparate intracellular signals. Cell 2010, 142:737-748.
    • (2010) Cell , vol.142 , pp. 737-748
    • Park, S.Y.1    Cromie, M.J.2    Lee, E.J.3    Groisman, E.A.4
  • 29
    • 0034902162 scopus 로고    scopus 로고
    • 2+) transporter in Escherichia coli
    • 2+) transporter in Escherichia coli. J.Bacteriol. 2001, 183:4806-4813.
    • (2001) J.Bacteriol. , vol.183 , pp. 4806-4813
    • Patzer, S.I.1    Hantke, K.2
  • 31
    • 79952444960 scopus 로고    scopus 로고
    • Insights into metalloregulation by M-box riboswitch RNAs via structural analysis of manganese-bound complexes
    • Ramesh A., Wakeman C.A., Winkler W.C. Insights into metalloregulation by M-box riboswitch RNAs via structural analysis of manganese-bound complexes. J.Mol. Biol. 2011, 407:556-570.
    • (2011) J.Mol. Biol. , vol.407 , pp. 556-570
    • Ramesh, A.1    Wakeman, C.A.2    Winkler, W.C.3
  • 32
    • 84872543206 scopus 로고    scopus 로고
    • A decade of riboswitches
    • Serganov A., Nudler E. A decade of riboswitches. Cell 2013, 152:17-24.
    • (2013) Cell , vol.152 , pp. 17-24
    • Serganov, A.1    Nudler, E.2
  • 33
    • 55249114833 scopus 로고    scopus 로고
    • Structural insights into amino acid binding and gene control by a lysine riboswitch
    • Serganov A., Huang L., Patel D.J. Structural insights into amino acid binding and gene control by a lysine riboswitch. Nature 2008, 455:1263-1267.
    • (2008) Nature , vol.455 , pp. 1263-1267
    • Serganov, A.1    Huang, L.2    Patel, D.J.3
  • 35
    • 0028327173 scopus 로고
    • Fur regulon in gram-negative bacteria. Identification and characterization of new iron-regulated Escherichia coli genes by a fur titration assay
    • Stojiljkovic I., Bäumler A.J., Hantke K. Fur regulon in gram-negative bacteria. Identification and characterization of new iron-regulated Escherichia coli genes by a fur titration assay. J.Mol. Biol. 1994, 236:531-545.
    • (1994) J.Mol. Biol. , vol.236 , pp. 531-545
    • Stojiljkovic, I.1    Bäumler, A.J.2    Hantke, K.3
  • 36
    • 0242298623 scopus 로고    scopus 로고
    • An mRNA structure in bacteria that controls gene expression by binding lysine
    • Sudarsan N., Wickiser J.K., Nakamura S., Ebert M.S., Breaker R.R. An mRNA structure in bacteria that controls gene expression by binding lysine. Genes Dev. 2003, 17:2688-2697.
    • (2003) Genes Dev. , vol.17 , pp. 2688-2697
    • Sudarsan, N.1    Wickiser, J.K.2    Nakamura, S.3    Ebert, M.S.4    Breaker, R.R.5
  • 37
    • 84883189709 scopus 로고    scopus 로고
    • Comparative genomics of metabolic capacities of regulons controlled by cis-regulatory RNA motifs in bacteria
    • Sun E.I., Leyn S.A., Kazanov M.D., Saier M.H.J., Novichkov P.S., Rodionov D.A. Comparative genomics of metabolic capacities of regulons controlled by cis-regulatory RNA motifs in bacteria. BMC Genomics 2013, 14:597.
    • (2013) BMC Genomics , vol.14 , pp. 597
    • Sun, E.I.1    Leyn, S.A.2    Kazanov, M.D.3    Saier, M.H.J.4    Novichkov, P.S.5    Rodionov, D.A.6
  • 38
    • 69349104590 scopus 로고    scopus 로고
    • Multiple metal-binding cores are required for metalloregulation by M-box riboswitch RNAs
    • Wakeman C.A., Ramesh A., Winkler W.C. Multiple metal-binding cores are required for metalloregulation by M-box riboswitch RNAs. J.Mol. Biol. 2009, 392:723-735.
    • (2009) J.Mol. Biol. , vol.392 , pp. 723-735
    • Wakeman, C.A.1    Ramesh, A.2    Winkler, W.C.3
  • 39
    • 57649207910 scopus 로고    scopus 로고
    • How do bacterial cells ensure that metalloproteins get the correct metal?
    • Waldron K.J., Robinson N.J. How do bacterial cells ensure that metalloproteins get the correct metal?. Nat. Rev. Microbiol. 2009, 7:25-35.
    • (2009) Nat. Rev. Microbiol. , vol.7 , pp. 25-35
    • Waldron, K.J.1    Robinson, N.J.2
  • 40
    • 80055048346 scopus 로고    scopus 로고
    • The Escherichia coli MntR miniregulon includes genes encoding a small protein and an efflux pump required for manganese homeostasis
    • Waters L.S., Sandoval M., Storz G. The Escherichia coli MntR miniregulon includes genes encoding a small protein and an efflux pump required for manganese homeostasis. J.Bacteriol. 2011, 193:5887-5897.
    • (2011) J.Bacteriol. , vol.193 , pp. 5887-5897
    • Waters, L.S.1    Sandoval, M.2    Storz, G.3
  • 43
    • 0037206833 scopus 로고    scopus 로고
    • Thiamine derivatives bind messenger RNAs directly to regulate bacterial gene expression
    • Winkler W., Nahvi A., Breaker R.R. Thiamine derivatives bind messenger RNAs directly to regulate bacterial gene expression. Nature 2002, 419:952-956.
    • (2002) Nature , vol.419 , pp. 952-956
    • Winkler, W.1    Nahvi, A.2    Breaker, R.R.3
  • 44
    • 79952382558 scopus 로고    scopus 로고
    • The Escherichia coli K-12 MntR miniregulon includes dps, which encodes the major stationary-phase DNA-binding protein
    • Yamamoto K., Ishihama A., Busby S.J., Grainger D.C. The Escherichia coli K-12 MntR miniregulon includes dps, which encodes the major stationary-phase DNA-binding protein. J.Bacteriol. 2011, 193:1477-1480.
    • (2011) J.Bacteriol. , vol.193 , pp. 1477-1480
    • Yamamoto, K.1    Ishihama, A.2    Busby, S.J.3    Grainger, D.C.4
  • 45
    • 84883809477 scopus 로고    scopus 로고
    • Mutations in interaction surfaces differentially impact E. coli Hfq association with small RNAs and their mRNA targets
    • Zhang A., Schu D.J., Tjaden B.C., Storz G., Gottesman S. Mutations in interaction surfaces differentially impact E. coli Hfq association with small RNAs and their mRNA targets. J.Mol. Biol. 2013, 425:3678-3697.
    • (2013) J.Mol. Biol. , vol.425 , pp. 3678-3697
    • Zhang, A.1    Schu, D.J.2    Tjaden, B.C.3    Storz, G.4    Gottesman, S.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.