The Escherichia coli K-12 MntR miniregulon includes dps, which encodes the major stationary-phase DNA-binding protein

Journal of Bacteriology

Volumn 193, Issue 6, 2011, Pages 1477-1480

  Yamamoto, Kaneyoshi ^a   Ishihama, Akira ^a   Busby, Stephen J W ^b   Grainger, David C ^c  

^a HOSEI UNIVERSITY   (Japan)

^b UNIVERSITY OF BIRMINGHAM   (United Kingdom)

^c UNIVERSITY OF WARWICK   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

DNA BINDING PROTEIN; MANGANESE;

ARTICLE; BACTERIAL GENE; BACTERIAL GENOME; BINDING SITE; CHROMATIN IMMUNOPRECIPITATION; DPS GENE; ESCHERICHIA COLI K 12; GENE EXPRESSION; MNTH GENE; MNTR GENE; PRIORITY JOURNAL; PROMOTER REGION; TRANSCRIPTION REGULATION; YEBN GENE;

BACTERIAL OUTER MEMBRANE PROTEINS; CHROMATIN IMMUNOPRECIPITATION; CHROMOSOMES, BACTERIAL; DNA, BACTERIAL; ESCHERICHIA COLI K12; ESCHERICHIA COLI PROTEINS; GENE EXPRESSION REGULATION, BACTERIAL; PROTEIN BINDING; REGULON; REPRESSOR PROTEINS;

ESCHERICHIA COLI; ESCHERICHIA COLI K12;

EID: 79952382558     PISSN: 00219193     EISSN: 10985530     Source Type: Journal    
DOI: 10.1128/JB.01230-10     Document Type: Article

References (19)

1. Almirón, M., A. J. Link, D. Furlong, and R. Kolter. 1992. A novel DNA-binding protein with regulatory and protective roles in starved Escherichia coli. Genes Dev. 6:2646-2654. (Pubitemid 23052891)
2. Altuvia, S., M. Almirón, G. Huisman, R. Kolter, and G. Storz. 1994. The dps promoter is activated by OxyR during growth and by IHF and sigma S in stationary phase. Mol. Microbiol. 13:265-272.
3. Ando, M., et al. 2003. Characterization of the role of the divalent metal ion-dependent transcriptional repressor MntR in the virulence of Staphylococcus aureus. Infect. Immun. 71:2584-2590. (Pubitemid 36519873)
4. Anjem, A., S. Varghese, and J. A. Imlay. 2009. Manganese import is a key element of the OxyR response to hydrogen peroxide in Escherichia coli. Mol. Microbiol. 72:844-858.
5. Chen, X., L. Guo, F. Zhaocheng, and T. Jiang. 2008. W-AlignACE: an improved Gibbs sampling algorithm based on more accurate position weight matrices learned from sequence and gene expression/ChIP-chip data. Bioinformatics 24:1121-1128. (Pubitemid 351594160)
6. Datsenko, K. A., and B. L. Wanner. 2000. One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products. Proc. Natl. Acad. Sci. U. S. A. 97:6640-6645.
7. Grainger, D. C., et al. 2004. Genomic studies with Escherichia coli MelR protein: applications of chromatin immunoprecipitation and microarrays. J. Bacteriol. 186:6938-6943.
8. Grainger, D. C., M. D. Goldberg, D. J. Lee, and S. J. Busby. 2008. Selective repression by Fis and H-NS at the Escherichia coli dps promoter. Mol. Microbiol. 68:1366-1377.
9. Grant, R. A., D. J. Filman, S. E. Finkel, R. Kolter, and J. M. Hogle. 1998. The crystal structure of Dps, a ferritin homolog that binds and protects DNA. Nat. Struct. Biol. 5:294-303.
10. Hayden, J. A., and M. P. Hendrich. 2010. EPR spectroscopy and catalase activity of manganese-bound DNA-binding protein from nutrient starved cells. J. Biol. Inorg. Chem. 15:729-736.
11. Kehres, D. G., M. L. Zaharik, B. B. Finlay, and M. E. Maguire. 2000. The NRAMP proteins of Salmonella typhimurium and Escherichia coli are selective manganese transporters involved in the response to reactive oxygen. Mol. Microbiol. 36:1085-1100.
12. 2+. J. Bacteriol. 184:3151-3158.
13. Makinoshima, H., S.-I. Aizawa, H. Hayashi, T. Miki, A. Nishimura, and A. Ishihama. 2003. Growth phase-coupled alterations in cell structure and function of Escherichia coli. J. Bacteriol. 185:1338-1345. (Pubitemid 36176866)
14. Page, L., L. Griffiths, and J. A. Cole. 1990. Different physiological roles of two independent pathways for nitrite reduction to ammonia by enteric bacteria. Arch. Microbiol. 154:349-354.
15. 2+ transporter in Escherichia coli. J. Bacteriol. 183:4806-4813.
16. Que, Q., and J. D. Helmann. 2000. Manganese homeostasis in Bacillus subtilis is regulated by MntR, a bifunctional regulator related to the diphtheria toxin repressor family of proteins. Mol. Microbiol. 35:1454-1468.
17. Shimada, T., A. Ishihama, S. J. Busby, and D. C. Grainger. 2008. The Escherichia coli RutR transcription factor binds at targets within genes as well as intergenic regions. Nucleic Acids Res. 36:3950-3955.
18. Wade, J. T., N. B. Reppas, G. M. Church, and K. Struhl. 2005. Genomic analysis of LexA binding reveals the permissive nature of the Escherichia coli genome and identifies unconventional target sites. Genes Dev. 19:2619-2630.
19. Wu, H., K. L. Tyson, J. A. Cole, and S. J. W. Busby. 1998. Regulation of transcription initiation at the Escherichia coli nir operon promoter: a new mechanism to account for co-dependence on two transcription factors. Mol. Microbiol. 27:493-505.