Biogenic precipitation of manganese oxides and enrichment of heavy metals at acidic soil pH

Chemical Geology

Volumn 402, Issue , 2015, Pages 6-17

  Mayanna, Sathish ^a   Peacock, Caroline L ^b   Schäffner, Franziska ^a   Grawunder, Anja ^a   Merten, Dirk ^a   Kothe, Erika ^a   Büchel, Georg ^a  

^a FRIEDRICH SCHILLER UNIVERSITY JENA   (Germany)

^b UNIVERSITY OF LEEDS   (United Kingdom)

Author keywords

(Bio)geochemical barrier; Acidic pH; Birnessite; Manganese oxidising bacteria; Metal sorption

Indexed keywords

BACTERIA; BACTERIOLOGY; CADMIUM; CRYSTALLINE MATERIALS; ELECTRON PROBE MICROANALYSIS; GEOCHEMISTRY; HEAVY METALS; MANGANESE OXIDE; METALS; MICROANALYSIS; ORGANIC CARBON; ORGANIC MINERALS; PH EFFECTS; PRECIPITATION (CHEMICAL); QUARTZ; SCANNING ELECTRON MICROSCOPY; SOILS; X RAY ABSORPTION SPECTROSCOPY; X RAY DIFFRACTION;

ACIDIC PH; BIRNESSITE; GEOCHEMICAL BARRIERS; HEAVY METAL CONCENTRATION; METAL SORPTION; ORGANIC CARBON CONTENTS; SYNCHROTRON X RAY DIFFRACTION; THERMODYNAMIC SPECIATION;

MANGANESE;

ACIDITY; BIOGENIC DEPOSIT; ENRICHMENT; HEAVY METAL; MANGANESE OXIDE; PH; PRECIPITATION (CHEMISTRY); SCAVENGING (CHEMISTRY); SOIL CHEMISTRY; SOIL PROFILE;

GERMANY; RONNEBURG; THURINGIA;

ACTINOBACTERIA; ARTHROBACTER; BACILLUS (BACTERIUM); BACTERIA (MICROORGANISMS); BREVIBACILLUS REUSZERI; FIRMICUTES; NEGIBACTERIA; POSIBACTERIA; PROTEOBACTERIA; SPHINGOMONAS;

EID: 84925013778     PISSN: 00092541     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.chemgeo.2015.02.029     Document Type: Article

References (88)

1. Akob D.M., Bohu T., Beyer A., Schäffner F., Händel M., Johnson C.A., Merten D., Büchel G., Totsche K.U., Küsel K. Identification of Mn(II)-oxidizing bacteria from a low pH contaminated former uranium mine. Appl. Environ. Microbiol. 2014, 10.1128/AEM. 01296-14.
2. Anderson C., Davis R., Bandolin N., Baptista A., Tebo B. Analysis of in situ manganese (II) oxidation in the Columbia River and offshore plume: linking Aurantimonas and the associated microbial community to an active biogeochemical cycle. Environ. Microbiol. 2011, 13(6):1561-1576.
3. Anderson C., et al. Mn (II) oxidation is catalyzed by heme peroxidases in "Aurantimonas manganoxydans" strain SI85-9A1 and Erythrobacter sp. strain SD-21. Appl. Environ. Microbiol. 2009, 75(12):4130-4138.
4. Bargar J.R., et al. Structural characterization of terrestrial microbial Mn oxides from Pinal Creek, AZ. Geochim. Cosmochim. Acta 2009, 73(4):889-910.
5. Bargar J.R., Webb S., Tebo B. EXAFS, XANES and in-situ SR-XRD characterization of biogenic manganese oxides produced in sea water. Phys. Scr. 2005, 2005:888.
6. Bargar J.R., et al. Biotic and abiotic products of Mn (II) oxidation by spores of the marine Bacillus sp. strain SG-1. Am. Mineral. 2005, 90(1):143-154.
7. Bargar J.R., Tebo B.M., Villinski J.E. In situ characterization of Mn (II) oxidation by spores of the marine Bacillus sp. strain SG-1. Geochim. Cosmochim. Acta 2000, 64(16):2775-2778.
8. Bradl H.B. Adsorption of heavy metal ions on soils and soils constituents. J. Colloid Interface Sci. 2004, 277(1):1-18.
9. Bromfield S.M. The deposition of manganese oxide by an alga on acid soil. Soil Res. 1976, 14(1):95-102.
10. Bromfield S.M. The effect of manganese-oxidizing bacteria and pH on the availability of manganous ions and manganese oxides to oats in nutrient solutions. Plant Soil 1978, 49(1):23-39.
11. 2+ oxidizing systems and multicopper oxidases: an overview of mechanisms and functions. Geomicrobiol J. 2000, 17(1):1-24.
12. Burkhardt E.M., Meißner S., Merten D., Büchel G., Küsel K. Heavy metal retention and microbial activities in geochemical barriers formed in glacial sediments subjacent to a former uranium mining leaching heap. Chem. Erde-Geochem. 2009, 69:21-34.
13. Burns V.M., Burns R.G. Post-depositional metal enrichment processes inside manganese nodules from the north equatorial Pacific. Earth Planet. Sci. Lett. 1978, 39(3):341-348.
14. Büchel G., Merten D. Geo-bio-interactions at heavy-metal-contaminated sites. Chem. Erde-Geochem. 2009, 69(Supplement 2(0)):1-3.
15. Carlsson E., Büchel G. Screening of residual contamination at a former uranium heap leaching site, Thuringia, Germany. Chem. Erde-Geochem. 2005, 65(Supplement 1(0)):75-95.
16. Carmichael M.J., Carmichael S.K., Santelli C.M., Strom A., Bräuer S.L. Mn (II)-oxidizing bacteria are abundant and environmentally relevant members of ferromanganese deposits in caves of the upper Tennessee River Basin. Geomicrobiol J. 2013, 30(9):779-800.
17. 2: applicability of the site binding-surface complexation model. Applied Geochemistry 1986, 1:255-264.
18. Chapnick S.D., Moore W.S., Nealson K.H. Microbially mediated manganese oxidation in a freshwater lake. Limnol. Oceanogr. 1982, 27(6):1004-1014.
19. Coldewey W.G., Klinger C. Characterization of the geological and hydrogeological situation. Biotechnology: Environmental Processes II 2000, 11b:43-59. Second edition.
20. Drits V.A., Silvester E., Gorshkov A.L., Manceau A. Structure of synthetic monoclinic Na-rich birnessite and hexagonal birnessite: I. Results from X-ray diffraction and selected area electron diffraction. Am. Mineral. 1997, 82:946-961.
21. Francis C.A., Tebo B.M. cumA multicopper oxidase genes from diverse Mn (II)-oxidizing and non-Mn (II)-oxidizing Pseudomonas strains. Appl. Environ. Microbiol. 2001, 67(9):4272-4278.
22. Francis C.A., Tebo B.M. Enzymatic manganese (II) oxidation by metabolically dormant spores of diverse Bacillus species. Appl. Environ. Microbiol. 2002, 68(2):874-880.
23. Fuller C.C., Harvey J.W. Reactive uptake of trace metals in the hyporheic zone of a mining-contaminated stream, Pinal Creek, Arizona. Environ. Sci. Technol. 2000, 34(7):1150-1155.
24. Grangeon S., Lanson B., Miyata N., Tani Y., Manceau A. Structure of nanocrystalline phyllomanganates produced by freshwater fungi. Am. Mineral. 2010, 95(11-12):1608-1616.
25. Granina L., Mats V. Iron-manganese nodules in Lake Baikal. Minerals of the Ocean-5 and Deep-sea minerals and Mining-2 2010, 23-26.
26. Grawunder A., Lonschinski M., Merten D., Büchel G. Distribution and bonding of residual contamination in glacial sediments at the former uranium mining leaching heap of Gessen/Thuringia, Germany. Chem. Erde-Geochem. 2009, 69:5-19.
27. Hein J.R., Mizell K., Koschinsky A., Conrad T.A. Deep-ocean mineral deposits as a source of critical metals for high- and green-technology applications: comparison with land-based resources. Ore Geol. Rev. 2013, 51:1-14.
28. 3) nanoparticle by isolated Acinetobacter sp. Curr. Microbiol. 2011, 63(3):300-305.
29. Ivarson K., Heringa P. Oxidation of manganese by microorganisms in manganese deposits of Newfoundland soil. Can. J. Soil Sci. 1972, 52(3):401-416.
30. Jakubick A.T., Gatzweiler R., Mager D., MacG Robertson A. The Wismut waste rock pile remediation program of the Ronneburg mining district, Germany. Proceedings of the Fourth International Conference on Acid Rock Drainage, Vancouver, B.C. Canada 1997, 1285-1301.
31. Koppi A.J., et al. Rare earth element trends and cerium-uranium-manganese associations in weathered rock from Koongarra, Northern Territory, Australia. Geochim. Cosmochim. Acta 1996, 60(10):1695-1707.
32. Koschinsky A., Halbach P. Sequential leaching of marine ferromanganese precipitates: Genetic implications. Geochimica et Cosmochimica Acta 1995, 59:5113-5132.
33. Lee G., Bigham J.M., Faure G. Removal of trace metals by coprecipitation with Fe, Al and Mn from natural waters contaminated with acid mine drainage in the Ducktown Mining District, Tennessee. Appl. Geochem. 2002, 17(5):569-581.
34. Lehmann R., Cheng H., Harsh J. Oxidation of phenolic acids by soil iron and manganese oxides. Soil Sci. Soc. Am. J. 1987, 51(2):352-356.
35. Luan F., Santelli C.M., Hansel C.M., Burgos W.D. Defining manganese(II) removal processes in passive coal mine drainage treatment systems through laboratory incubation experiments. Appl. Geochem. 2012, 27:1567-1578.
36. Manceau A., Charlet L. X-ray absorption spectroscopic study of the sorption of Cr (III) at the oxide-water interface: I. Molecular mechanism of Cr (III) oxidation on Mn oxides. J. Colloid Interface Sci. 1992, 148(2):425-442.
37. Manceau A., Combes J. Structure of Mn and Fe oxides and oxyhydroxides: a topological approach by EXAFS. Phys. Chem. Miner. 1988, 15(3):283-295.
38. 2+ oxidation by the phyllomangante buserite. Am. Mineral. 1997, 82:1150-1175.
39. Manceau A., Kersten M., Marcus M.A., Geoffroy N., Granina L. Ba and Ni speciation in a nodule of binary Mn oxide phase composition from Lake Baikal. Geochim. Cosmochim. Acta 2007, 71(8):1967-1981.
40. Manceau A., Llorca S., Calas G. Structural chemistry of Mn, Co and Ni in some natural manganese oxides. J. Phys. Colloq. 1986, 47. (C8-703-C8-707).
41. Manceau A., Marcus M.A., Tamura N. Quantitative speciation of heavy metals in soils and sediments by synchrotron X-ray techniques. Rev. Mineral. Geochem. 2002, 49(1):341-428.
42. Manceau A., et al. Molecular-scale speciation of Zn and Ni in soil ferromanganese nodules from loess soils of the Mississippi Basin. Environ. Sci. Technol. 2003, 37(1):75-80.
43. Mandernack K.W., Post J., Tebo B.M. Manganese mineral formation by bacterial spores of the marine Bacillus, strain SG-1: evidence for the direct oxidation of Mn (II) to Mn (IV). Geochim. Cosmochim. Acta 1995, 59(21):4393-4408.
44. McKeown D.A., Post J.E. Characterization of manganese oxide mineralogy in rock varnish and dendrites using X-ray absorption spectroscopy. Am. Mineral. 2001, 86(5-6):701-713.
45. Miller A.Z., et al. Biogenic Mn oxide minerals coating in a subsurface granite environment. Chem. Geol. 2012, 322-323:181-191.
46. Miyata N., Tani Y., Sakata M., Iwahori K. Microbial manganese oxide formation and interaction with toxic metal ions. J. Biosci. Bioeng. 2007, 104(1):1-8.
47. Moon E.M., Peacock C.L. Modelling Cu(II) adsorption to ferrihydrite and ferrihydrite-bacteria composites: deviation from additive adsorption in the composite sorption system. Geochim. Cosmochim. Acta 2013, 104:148-164.
48. 2 and Mn (II) species in aqueous solutions. Geochim. Cosmochim. Acta 2005, 69(1):35-48.
49. Murray J.W. The interaction of metal ions at the manganese dioxide-solution interface. Geochim. Cosmochim. Acta 1975, 39(4):505-519.
50. Nagy B., et al. Rock varnish in the Sonoran Desert: microbiologically mediated accumulation of manganiferous sediments. Sedimentology 1991, 38(6):1153-1171.
51. Nelson Y.M., Lion L.W., Ghiorse W.C., Shuler M.L. Production of biogenic Mn oxides by Leptothrix discophora SS-1 in a chemically defined growth medium and evaluation of their Pb adsorption characteristics. Appl. Environ. Microbiol. 1999, 65(1):175-180.
52. Nelson Y.M., Lion L.W., Shuler M.L., Ghiorse W.C. Effect of oxide formation mechanisms on lead adsorption by biogenic manganese (hydr) oxides, iron (hydr) oxides, and their mixtures. Environ. Sci. Technol. 2002, 36(3):421-425.
53. 2. Geochim. Cosmochim. Acta 2001, 65(5):695-703.
54. Ott N. Permeable Reactive Barriers for Inorganics 2000, USEPA, Washington DC.
55. Parkhurst D.L., Appelo C. Description of input and examples for PHREEQC version 3-a computer program for speciation, batch-reaction, one-dimensional transport, and inverse geochemical calculations. US Geological Survey Techniques and Methods, Book 6, Modeling Techniques 2013.
56. Peacock C.L. Physiochemical controls on the crystal-chemistry of Ni in birnessite: genetic implications for ferromanganese precipitates. Geochim. Cosmochim. Acta 2009, 73(12):3568-3578.
57. Peacock C.L., Moon E.M. Oxidative scavenging of thallium by birnessite: explanation for thallium enrichment and stable isotope fractionation in marine ferromanganese precipitates. Geochim. Cosmochim. Acta 2012, 84:297-313.
58. Peacock C.L., Sherman D.M. Sorption of Ni by birnessite: equilibrium controls on Ni in seawater. Chem. Geol. 2007, 238:94-106.
59. Peacock C.L., Sherman D.M. Copper (II) sorption onto goethite, hematite and lepidocrocite: a surface complexation model based on ab initio molecular geometries and EXAFS spectroscopy. Geochim. Cosmochim. Acta 2004, 68(12):2623-2637.
60. Peng J.-F., Song Y.-H., Yuan P., Cui X.-Y., Qiu G.-l. The remediation of heavy metals contaminated sediment. J. Hazard. Mater. 2009, 161(2-3):633-640.
61. Perel'man A. Geochemical principles of landscape classification. Sov. Geogr. 1961, 2(3):63-73.
62. Perel'man A.I. Geochemistry of Epigenesis 1967, 266. Plenum Press, New York.
63. Perel'man A.I. Geochemical barriers: theory and practical applications. Appl. Geochem. 1986, 1(6):669-680.
64. Post J.E. Manganese oxide minerals: crystal structures and economic and environmental significance. Proc. Natl. Acad. Sci. 1999, 96(7):3447.
65. Ravel B., Newville M. ATHENA, ARTEMIS, HEPHAESTUS: data analysis for X-ray absorption spectroscopy using IFEFFIT. J. Synchrotron Radiat. 2005, 12:537-541.
66. Santelli C.M., Chaput D.L., Hansel C.M. Microbial communities promoting Mn (II) oxidation in Ashumet Pond, a historically polluted freshwater pond undergoing remediation. Geomicrobiol J. 2014, 31(7):605-616.
67. Santelli C.M., Pfister D.H., Lazarus D., Sun Lu., Burgos W.D., Hansel C.M. Promotion of Mn (II) oxidation and remediation of coal mine drainage in passive treatment systems by diverse fungal and bacterial communities. Appl. Environ. Microbiol. 2010, 76(14):4871-4875.
68. Santelli C.M., Webb S.M., Dohnalkova A.C., Hansel C.M. Diversity of Mn oxides produced by Mn(II)-oxidizing fungi. Geochim. Cosmochim. Acta 2011, 75:2762-2776.
69. Saratovsky I., Wightman P.G., Pastén P.A., Gaillard J.F., Poeppelmeier K.R. Manganese oxides: parallels between abiotic and biotic structures. J. Am. Chem. Soc. 2006, 128(34):11188-11198.
70. 2): controls on Cu in the deep ocean. Geochim. Cosmochim. Acta 2010, 74(23):6721-6730.
71. Spiro T.G., Bargar J.R., Sposito G., Tebo B.M. Bacteriogenic manganese oxides. Acc. Chem. Res. 2009, 43(1):2-9.
72. Takahashi Y., Manceau A., Geoffroy N., Marcus M.A., Usui A. Chemical and structural control of the partitioning of Co, Ce, and Pb in marine ferromanganese oxides. Geochim. Cosmochim. Acta 2007, 71(4):984-1008.
73. Tanaka K., et al. A specific Ce oxidation process during sorption of rare earth elements on biogenic Mn oxide produced by Acremonium sp. strain KR21-2. Geochim. Cosmochim. Acta 2010, 74(19):5463-5477.
74. Tebo B.M., et al. Biogenic manganese oxides: properties and mechanisms of formation. Annu. Rev. Earth Planet. Sci. 2004, 32:287-328.
75. Tebo B.M., Johnson H.A., McCarthy J.K., Templeton A.S. Geomicrobiology of manganese (II) oxidation. Trends Microbiol. 2005, 13(9):421-428.
76. Tebo B.M., Clement B.G., Dick G.J. Biotransformations of manganese. Manual of Environmental Microbiology 2007, 1223-1238. ASM Press, Washington, DC. 3rd ed.
77. Templeton A.S., Staudigel H., Tebo B.M. Diverse Mn (II)-oxidizing bacteria isolated from submarine basalts at Loihi Seamount. Geomicrobiol J. 2005, 22(3-4):127-139.
78. Tipping E., Heaton M. The adsorption of aquatic humic substances by two oxides of manganese. Geochim. Cosmochim. Acta 1983, 47(8):1393-1397.
79. Trivedi P., Axe L. Modeling Cd and Zn sorption to hydrous metal oxides. Environ. Sci. Technol. 2000, 34(11):2215-2223.
80. Villalobos M., Lanson B., Manceau A., Toner B., Sposito G. Structural model for the biogenic Mn oxide produced by Pseudomonas putida. Am. Mineral. 2006, 91(4):489-502.
81. Villalobos M., Toner B., Bargar J., Sposito G. Characterization of the manganese oxide produced by Pseudomonas putida strain MnB1. Geochim. Cosmochim. Acta 2003, 67(14):2649-2662.
82. Webb S., Tebo B., Bargar J. Structural characterization of biogenic Mn oxides produced in seawater by the marine Bacillus sp. strain SG-1. Am. Mineral. 2005, 90(8-9):1342-1357.
83. Webb S.M., Dick G.J., Bargar J.R., Tebo B.M. Evidence for the presence of Mn (III) intermediates in the bacterial oxidation of Mn (II). Proc. Natl. Acad. Sci. U. S. A. 2005, 102(15):5558-5563.
84. Xuezheng L., Aiguo G., Haowen C. Isolation and phylogenetic analysis of cultivable manganese bacteria in sediments from the Arctic Ocean. Acta Ecol. Sin. 2008, 28(12):6364-6370.
85. Zakharova Y.R., Parfenova V., Granina L., Kravchenko O., Zemskaya T. Distribution of iron-and manganese-oxidizing bacteria in the bottom sediments of Lake Baikal. Inland Water Biol. 2010, 3(4):313-321.
86. Zeien H., Brümmer G.W. Chemische Extraktionen zur Bestimmung von Schwermetallbindungsformen in Böden. Mitteilungen Dt. Bodenkundl. Gesellsch 1989, 59:505-510.
87. Zhu M., Ginder-Vogel M., Parikh S.J., Feng X.H., Sparks D.L. Cation effects on the layer structure of biogenic Mn-oxides. Environ. Sci. Technol. 2010, 44(12):4465-4471.
88. Xu Y., Axe L., Boonfueng T., Tyson T.A., Trivedi P., Pandya K. Ni(II) complexation to amorphous hydrous ferric oxide: an X-ray absorption spectroscopy study. J. Colloid Interface Sci. 2007, 314:10-17.