Bacteriogenic manganese oxides

Accounts of Chemical Research

Volumn 43, Issue 1, 2010, Pages 2-9

  Spiro, Thomas G ^a   Bargar, John R ^b   Sposito, Garrison ^c   Tebo, Bradley M ^d  

^a UNIVERSITY OF WASHINGTON   (United States)

^b SLAC NATIONAL ACCELERATOR LABORATORY   (United States)

^c UNIVERSITY OF CALIFORNIA   (United States)

^d OREGON HEALTH AND SCIENCE UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CATION; MANGANESE DERIVATIVE; MANGANESE OXIDE; OXIDE; OXIDOREDUCTASE;

ADSORPTION; AMINO ACID SEQUENCE; ARTICLE; BACTERIUM; CHEMISTRY; METABOLISM; MOLECULAR GENETICS; OXIDATION REDUCTION REACTION; X RAY DIFFRACTION;

ADSORPTION; AMINO ACID SEQUENCE; BACTERIA; CATIONS; MANGANESE COMPOUNDS; MOLECULAR SEQUENCE DATA; OXIDATION-REDUCTION; OXIDES; OXIDOREDUCTASES; X-RAY DIFFRACTION;

EID: 75449091026     PISSN: 00014842     EISSN: None     Source Type: Journal    
DOI: 10.1021/ar800232a     Document Type: Article

References (74)

1. Post, J. E. Manganese oxide minerals: Crystal structures and economic and environmental significance. Proc. Natl. Acad. Sci. U.S.A 1999, 96, 3447-3454.
2. Nelson, Y. M.; Lion, L. W. In Geochemical and Hydrological Reactivity of Heavy Metals in Soils; Selim, H. M., Kingerly, W. L., Eds.; CRC Press: Boca Raton, 2003; pp 169-186.
3. Tebo, B. M.; Bargar, J. R.; Clement, B.; Dick, G.; Murray, K. J.; Parker, D.; Verity, R.; Webb, S. Manganese biooxides: Properties and mechanisms of formation. Annu. Rev. Earth Planetary Sci. 2004, 32, 287-328. (Pubitemid 38836373)
4. Suib, S. L. Porous manganese oxide octahedral molecular sieves and octahedral layered materials. Ace. Chem. Res. 2008, 41, 479-487.
5. 2 precipitates in the early ocean. Proc. Natl. Acad. Sci. U.S.A 2002, 99, 8631-8636.
6. Bargar, J. R.; Fuller, C. C.; Marcus, M. A.; Brearley, A. J.; De la Rosa, M. P.; Webb, S. M.; Caldwell, W. A. Structural characterization of terrestrial microbial Mn oxides from Pinal Creek, AZ. Geochim. Cosmochim. Acta 2009, 73, 889-910.
7. Bodei, S.; Manceau, A.; Geoffroy, N.; Baronnet, A.; Buatier, M. Formation of todorokite from vernadite in Ni-rich hemipelagic sediments. Geochim. Cosmochim. Acta 2007, 71, 5698-5716. (Pubitemid 350107715)
8. Villalobos, M.; Lanson, B.; Manceau, A.; Toner, B.; Sposito, G. Structural model for the biogenic Mn oxide produced by Pseudomonas putida. Amer. Mineral. 2006, 91, 489-502.
9. Webb, S. M.; Tebo, B. M.; Bargar, J. R. Structural characterization of biogenic manganese oxides produced in sea water by the marine Bacillus sp., strain SG-1. Am. Mineral. 2005, 90, 1342-1357. (Pubitemid 41461704)
10. Webb, S. M.; Tebo, B. M.; Bargar, J. R. Structural influences of sodium and calcium ions on biogenic manganese oxides produced by the marine Bacillus sp., strain SG-1. Geomicrobiol. J. 2005, 22, 181-193. (Pubitemid 40837071)
11. Morgan, J. J. Metal Ions in Biological Systems, Marcel Dekker: New York, 2000; Vol.37, pp 1-34.
12. 2 and Mn(II) species in aqueous solutions. Geochim. Cosmochim. Acta 2005, 69, 35-48.
13. Nico, P. S.; Anastasio, C.; Zasoski, R. J. Rapid photo-oxidation of Mn(II) mediated by humic substances. Geochim. Cosmochim. Acta 2002, 66, 4047-4056.
14. Hansel, C. M.; Francis, C. A. Coupled photochemical and enzymatic Mn(II) oxidation pathways of a planktonic Roseobacter-like bacterium. Appl. Environ. Microbiol. 2006, 72, 3543-3549.
15. Sunda, W. G.; Huntsman, S. A. Effect of sunlight on redox cycles of manganese in the southwestern Sargasso Sea. Deep-Sea Res. 1988, 35, 1297-1317.
16. Tebo, B. M. Manganese (II) oxidation in the suboxic zone of the Black Sea. Deep-Sea Res. 1991, 38, S883-S905.
17. Tebo, B. M.; Emerson, S. The effect of oxygen tension, Mn(II) concentration and temperature on the microbially catalyzed Mn(II) oxidation rate in a marine fjord. Appl. Environ. Microbiol. 1985, 50, 1268-1273. (Pubitemid 16193443)
18. Bargar, J. R.; Tebo, B. M.; Bergamann, U.; Webb, S. M.; Glaetzel, P.; Chiu, V. Q.; Villalobos, M. Biotic and abiotic products of Mn(II) oxidation by spores of the marine Bacillus sp. strain SG-1. Am. Mineral. 2005, 90, 143-154.
19. Emerson, D. In Environmental Microbe-Metal Interactions, Lovley, D. R., Ed.; ASM Press: Washington, D.C., 2000; pp 31 -52.
20. Jackson, D. D. The precipitation of iron, manganese, and aluminum by bacterial action. J. Soc. Chem. Ind. 1902, 21, 681-684.
21. Miyata, J.; Tani, Y.; Sakata, M.; Iwahori, K. Microbial manganese oxide formation and interaction with toxic metal ions. J. Biosci. Bioeng. 2007, 104, 1-8. (Pubitemid 47223813)
22. Tebo, B. M.; Johnson, H. A.; McCarthy, J. K.; Templeton, A. S. Geomicrobiology of manganese(II) oxidation. Trends Microbiol. 2005, 13, 421-428.
23. 2+ oxidizing systems and multicopper oxidases: An overview of mechanisms and functions. Geomicrobiol. J. 2000, 17, 1-24.
24. van Waasbergen, L. G.; Hildebrand, M.; Tebo, B. M. Identification and characterization of a gene cluster involved in manganese oxidation by spores of the marine Bacillus sp. strain SG-1. J. Bacteriol. 1996, 178, 3517-3530.
25. 2+-oxidation in Pseudomonas putida GB-1. Appl. Environ. Microbiol. 1999, 65, 1762-1768.
26. Corstjens, P. L. A. M.; de Vrind, J. P. M.; Goosen, T.; de Vrind-de Jong, E. W. Identification and molecular analysis of the Leptothrix discophora SS-1 mofA gene a gene putatively encoding a manganese-oxidizing protein with copper domains. Geomicrobiol. J. 1997, 14, 91-108.
27. Ridge, J. P.; Lin, M.; Larsen, E. I.; Fegan, M.; McEwan, A. G.; Sly, L. I. A multicopper oxidase is essential for manganese oxidation and laccase-like activity in Pedomicrobium sp. ACM 3067. Environ. Microbiol. 2007, 9, 944-953.
28. Hastings, D.; Emerson, S. Oxidation of manganese by spores of a marine Bacillus. Kinetic and thermodynamic considerations. Geochim. Cosmochim. Acta 1986, 50, 1819-1824.
29. 4 (hausmannite) by spore coats of a marine Bacillus sp. Appl. Environ. Microbiol. 1988, 54, 2140-2143.
30. Mandemack, K. W.; Post, J.; Tebo, B. M. Manganese mineral formation by bacterial spores of the marine Bacillus strain SG-1 : Evidence for the direct oxidation of Mn(II) to Mn(IV). Geochim. Cosmochim. Acta 1995, 59, 4393-4408.
31. Greene, A. C.; Madgwick, J. C. Microbial formation of manganese oxides. Appl. Environ. Microbiol. 1991, 57, 1114-1120.
32. Bargar, J. R.; Tebo, B. M.; Villinski, J. E. In situ characterization of Mn(II) oxidation by spores of the marine Bacillus sp. strain SG-1. Geochim. Cosmochim. Acta 2000, 64, 2737-2749.
33. Jurgensen, A.; Widmeyer, J.; Gordon, R.; Bendell-Young, L.; Moore, M.; Crozier, E. The structure of the manganese oxide on the sheath of the bacterium Leptothrix discophora: An EXAFS study. Am. Mineral. 2004, 89, 1110-1118. (Pubitemid 39052042)
34. Saratovsky, I.; Wightman, P. G.; Gaillard, J.-F.; Poeppelmeier, K. R. Manganese oxides: Parallels between abiotic and biotic structures. J. Am. Chem. Soc. 2006, 128, 11188-11198.
35. Villalobos, M.; Toner, B.; Bargar, J.; Sposito, G. Characterization of the manganese oxide produced by Pseudomonas putida strain MnB1. Geochim. Cosmochim. Acta 2003, 67, 2649-2662. (Pubitemid 36922772)
36. Drits, V. A.; Silvester, E.; Gorshkov, A. I.; Manceau, A. Structure of synthetic monodinic Na-rich birnessite and hexagonal birnessite: I. Results from X-ray diffraction and selected area electron diffraction. Am. Mineral. 1997, 82, 946-961. (Pubitemid 127568296)
37. 4.I. Two-layer polytype from 800 °C experiment. Chem. Mater. 2003, 15, 4666-4678.
38. Lanson, B.; Drits, V. A.; Silwester, E.; Manceau, A. Structure of H-exchanged hexagonal birnessite and its mechanism of formation from Na-rich monoclinic buserite at low pH. Am. Mineral. 2000, 85, 826-838. (Pubitemid 30419255)
39. Silvester, E.; Manceau, A.; Drits, V. A. Structure of synthetic monoclinic Na-rich birnessite and hexagonal birnessite: II. Results from chemical studies and EXAFS spectroscopy. Am. Mineral. 1997, 82, 962-978. (Pubitemid 127568297)
40. Harvey, J. W.; Fuller, C. C. Effect of enhanced manganese oxidation in the hyporheic zone on basin-scale geochemical mass balance. Water Resour. Res. 1998, 34, 623-636.
41. Marble, J. C.; Corley, T. L.; Conklin, M. H.; and Fuller, C. C. Environmental factors affecting oxidation of manganese in Pinal Creek, Arizona; Morganwalp, D. W., Buxton, H. T., Eds.; U.S. Geological Survey Toxic Substances Hydrology ProgramProceedings of the Technical Meeting, Charleston, South Carolina, March 8-12, 1999, Vol.1 of 3, Contamination from Hardrock Mining: U.S. Geological Survey Water-Resources Investigations Report 99-4018A, West Trenton, NJ, 1999, pp 173-183.
42. Isaure, M. P.; Manceau, A.; Geoffroy, N.; Laboudigue, A.; Tamura, N.; Marcus, M. A. Zinc mobility and speciation in soil covered by contaminated dredged sediment using micrometer-scale and bulk-averaging X-ray fluorescence, absorption and diffraction techniques. Geochim. Cosmochim. Acta 2005, 69, 1173-1198.
43. Manceau, A.; Lanson, B.; Drits, V. A. Structure of heavy metal sorbed biressite. Part III: Results from powder and polarized extended X-ray absorption fine structure spectroscopy. Geochim. Cosmochim. Acta 2002, 66, 2639-2663.
44. Marcus, M. A.; Manceau, A.; Kersten, M. Mn, Fe, Zn and As speciation in a fastgrowing ferromanganese marine nodule. Geochim. Cosmochim. Acta 2004, 68, 3125-3136.
45. Matocha, C. J.; Elzinga, E. J.; Sparks, D. L. Reactivity of Pb(II) at the Mn(III, IV) (oxyhydr)oxide-water interface. Environ. Sci. Technol. 2001, 35, 2967-2972.
46. Nelson, Y. M.; Lion, L. W.; Ghiorse, W. C.; Shuler, M. L. Production of biogenic Mn oxides by Leptothrix discophera SS-1 in a chemically defined growth medium and evaluation of their Pb adsorption characteristics. Appl. Environ. Technol. 1999, 65, 175-180.
47. Nelson, Y. M.; Lion, L. W.; Shuler, M. L.; Ghiorse, W. C. Effect of oxide formation mechanisms on lead adsorption by biogenic manganese (hydroxides, iron (hydroxides, and their mixtures. Environ. Sci. Technol. 2002, 36, 421-425.
48. Takahashi, U.; Manceau, A.; Geoffroy, M.; Marcus, M. A.; Usui, A. Chemical and structural control of the partitioning of Co, Ce, and Pb in marine ferromanganese oxides. Geochim. Cosmochim. Acta 2007, 71, 984-1008.
49. Tani, Y.; Ohashi, M.; Miyata, N.; Seyama, H.; Iwahori, K.; Soma, M. Sorption of Co(II), Ni(II), and Zn(II) on biogenic manganese oxides produced by a Mn-oxidizing fungus, strain KR21-2. J. Environ. Sci. Health 2004, A39, 2641-2660. (Pubitemid 39361589)
50. Toner, B.; Manceau, A.; Webb, S.; Sposito, G. Zinc sorption to biogenic hexagonal-birnessite particles within a hydrated bacterial biofilm. Geochim. Cosmochim. Acta 2006, 70, 27-43. (Pubitemid 43009892)
51. Villalobos, M.; Bargar, J. R.; Sposito, G. Mechanisms of Pb(II) sorption on a biogenic maganese oxide. Environ. Sci. Technol. 2005, 39, 569-576. (Pubitemid 40129876)
52. Nelson, Y. M.; Lion, L. W.; Shuler, M. L.; Ghiorse, W. C. Lead binding to metal oxide and organic phases of natural aquatic biofilms. Limnol. Oceanog. 1999, 44, 1715-1729.
53. Wilson, A. R.; Lion, L. W.; Nelson, Y. M.; Shuler, M. L.; Ghiorse, W. C. The effects of pH and surface composition of Pb adsorption to natural freshwater biofilms. Environ. Sci. Technol. 2001, 35, 3182-3189. (Pubitemid 32881752)
54. Larsen, E. I.; Sly, L. I.; McEwan, A. G. Manganese(II) adsorption and oxidation by whole cells and a membrane fraction of Pedomicrobium sp. ACM 3067. Arch. Microbiol. 1999, 171, 257-264.
55. Francis, C. A.; Casciotti, K. L.; Tebo, B. M. Localization of Mn(II)-oxidizing activity and the putative multicopper oxidase, MnxG, to the exosporium of the marine Bacillus sp. strain SG-1. Arch. Microbiol. 2002, 178, 450-456.
56. Francis, C. A.; Tebo, B. M. Enzymatic manganese(II) oxidation by metabolically-dormant spores of diverse Bacillus species. Appl. Environ. Microbiol. 2002, 68, 874-880.
57. Okazaki, M.; Sugita, T.; Shimizu, M.; Ohode, Y.; Iwamoto, K.; de Vrind-de Jong, E. W.; de Vrind, J. P. M.; Corstjens, P. L. A. M. Partial purification and characterization of manganese-oxidizing factors of Pseudomonas fluorescens GB-1. Appl. Environ. Microbiol. 1997, 63, 4793-4799. (Pubitemid 27524213)
58. Dick G. J.; Torpey, J. W.; Beveridge, T. j.; Tebo, B. M. Direct identification of a bacterial manganese(II) oxidase, the multicopper oxidase MnxG, from spores of several different marine Bacillus species. Appl. Environ. Microbiol. 2008, 74, 1527-1534.
59. 2+ -oxidizing protein from Leptothrix discophora SS-1. J. Bacteriol. 1987, 169, 1279-1285.
60. da Silva, J. J. R. F.; Williams, R. J. P. The Biological Chemistry of the Elements, Clarendon Press: Oxford, U.K., 1991.
61. Webb, S. M.; Bargar, J. R.; Dick, F. J.; Tebo, B. M. Evidence for the presence of Mn(III) intermediates in the bacterial oxidation of Mn(II). Proc. Nati. Acad. Sci. U.S.A. 2005, 102, 5558-5563.
62. Lindley, P. F.; Card, G.; Zaitseva, I.; Zaitsev, V.; Reinhammar, B.; SelinLindgren, E.; Yoshida, K. An X-ray structural study of human ceruloplasmin in relation to ferroxidase activity. J. Biol. Inorg Chem. 1997, 2, 454-463. (Pubitemid 27375235)
63. Pizarro, S. A.; Visser, H.; Cinco, R. M.; Robblee, J. H.; Pal, S.; Mukhopadhyay, S.; Mok, H. J.; Sauer, K.; Wieghardt, K.; Armstrong, W. H.; Yachandra, V. K. Chloride ligation in inorganic manganese model compounds relevant to Photosystem II studied using X-ray absorption spectroscopy. J. Biol. Inorg. Chem. 2004, 9, 247-255.
64. Yoder, D. W.; Hwang, J.; Penner-Hahn, J. E. In Manganese and Its Role in Biological Processes, Sigel, A., Sigel, H., Eds.; Metal Ions in Biological Systems, Vol.37; Marcel Dekker: New York, 2000; pp 527-557.
65. Hwang, J.; Krebs, C.; Huynh, B. H.; Edmondson, D. E.; Theil, E. C.; Penner-Hahn, J. E. A. short Fe-Fe distance in peroxodiferric ferritin: Control of Fe substrate versus cofactor decay. Science 2000, 287, 122-125.
66. Fuller, C. C.; Harvey, J. W. Reactive uptake of trace metals in the hyporheic zone of a mining-contaminated stream, Pinal Creek Arizona. Environ. Sci. Technol. 2000, 34, 1150-1155.
67. Duckworth, O. W.; Bargar, J. R.; Sposito, G. Sorption of ferric iron from ferrioxamine B to synthetic and biogenic layer type manganese oxides. Geochim. Cosmochim. Acta 2008, 72, 3371-3380.
68. Donat, J. R.; Bruland, K. W. In Trace Elements in Natural Waters; Salbu, B., Steinnes, E., Eds.; CRC Press: Boca Raton, FL, 1995; pp 247-282.
69. Kwon, K.; Refson, K.; Sposito, G. Defect-induced photoconductivity in layered manganese oxides: A density functional theory study. Phys. Rev. Lett 2008, 100, 146601.
70. Sakai, N.; Ebina, Y.; Takada, K.; Sasaki, T. Photocurrent generation from semiconducting manganese oxide nanosheets in response to visible light. J. Phys. Chem. B 2005, 109, 9651-9655. (Pubitemid 40751062)
71. Burkhard, C.; Luther, G. W., III; Ruppel, D. T. In Mineral-Water Interfacial Reactions: Kinetics and Mechanisms, Sparks, D. L, Grundl, T. J., Eds.; ACS Symposium Series 715; American Chemical Society: Washington, DC, 1998; pp 265-280.
72. Trouwborst, R. E.; Clement, B. G.; Tebo, B. M.; Glazer, B. T.; Luther, G. W., III. Soluble Mn(III) in suboxic zones. Science 2006, 313, 1955-1957.
73. Duckworth, O. W.; Sposito, G. Siderophore-manganese(III) interactions II. Manganite dissolution promoted by desferoxamine B. Environ. Sci. Technol. 2005, 39, 6045-6051.
74. Parker, D. L.; Sposito, G.; Tebo, B. M. Manganese(III) binding to a pyoverdine siderophore produced by a manganese(II)-oxidizing bacterium. Geochim. Cosmochim. Acta 2004, 68, 4809-4820.