Phylogenetic analysis of the Listeria monocytogenes based on sequencing of 16S rRNA and hlyA genes

Molecular Biology Reports

Volumn 41, Issue 12, 2014, Pages 8219-8229

  Soni, Dharmendra Kumar ^a   Dubey, Suresh Kumar ^a  

^a BANARAS HINDU UNIVERSITY   (India)

Author keywords

16S rRNA; hlyA; L. monocytogenes; Phylogenetic analysis; Sequencing

Indexed keywords

BACTERIAL RNA; RNA 16S; BACTERIAL TOXIN; HEAT SHOCK PROTEIN; HEMOLYSIN; HLYA PROTEIN, LISTERIA MONOCYTOGENES;

ARTICLE; BACTERIAL GENE; BACTERIUM IDENTIFICATION; BACTERIUM ISOLATE; CONTROLLED STUDY; DNA ISOLATION; GENE SEQUENCE; HLYA GENE; LISTERIA MONOCYTOGENES; MOLECULAR PHYLOGENY; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENETIC TREE; RNA SEQUENCE; SEQUENCE ANALYSIS; SEQUENCE HOMOLOGY; ANIMAL; CLASSIFICATION; DAIRY PRODUCT; FOOD CONTROL; GENETICS; HUMAN; ISOLATION AND PURIFICATION; LISTERIOSIS; MICROBIOLOGY; MILK; MOLECULAR EVOLUTION; MOLECULAR GENETICS; PHYLOGENY; PROCEDURES;

LISTERIA; LISTERIA GRAYI; LISTERIA INNOCUA; LISTERIA IVANOVII; LISTERIA MONOCYTOGENES; LISTERIA SEELIGERI; LISTERIA WELSHIMERI;

ANIMALS; BACTERIAL TOXINS; DAIRY PRODUCTS; EVOLUTION, MOLECULAR; FOOD MICROBIOLOGY; HEAT-SHOCK PROTEINS; HEMOLYSIN PROTEINS; HUMANS; LISTERIA MONOCYTOGENES; LISTERIOSIS; MILK; MOLECULAR SEQUENCE DATA; PHYLOGENY; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, RNA; SOIL MICROBIOLOGY; WATER MICROBIOLOGY;

EID: 84924983200     PISSN: 03014851     EISSN: 15734978     Source Type: Journal    
DOI: 10.1007/s11033-014-3724-2     Document Type: Article

References (36)

1. Woese CR (1987) Bacterial evolution. Microbiol Rev 51:221–227
2. Moreno LZ, Paixão R, de Gobbi DDS, Raimundo DC, Ferreira TSP, Moreno AK, Hofer E, dos Reis CMF, Matté GR, Matté MH (2014) Phenotypic and genotypic characterization of atypical Listeria monocytogenes and Listeria innocua isolated from swine slaughterhouses and meat markets. Biomed Res Int. doi:10.1155/2014/742032
3. Klinger JD, Johnson A, Croan D, Flynn P, Whippie K, Kimball M, Lawrie J, Curiale M (1988) Comparative studies of nucleic acid hybridization assay for Listeria in foods. J Assoc Off Anal Chem 71:669–673
4. Collins MD, Wallbanks S, Lane DJ, Shah J, Nietupski R, Smida J, Dorsch M, Stackebrandt E (1991) Phylogenetic analysis of the genus Listeria based on reverse transcriptase sequencing of 16S rRNA. Int J Syst Bacteriol 41:240–246
5. Wang RF, Cao WW, Johnson MG (1991) Development of a 16S rRNA-based oligomer probe specific for Listeria monocytogenes. Appl Environ Microbiol 57:3666–3670
6. Wiedmann M, Czajka J, Barany F, Batt CA (1992) Discrimination of Listeria monocytogenes from other Listeria species by ligase chain reaction. Appl Environ Microbiol 58:3443–3447
7. Czajka J, Bsat N, Piani M, Russ W, Sultana K, Wiedmann M, Whitaker R, Batt CA (1993) Differentiation of Listeria monocytogenes and Listeria innocua by 16S rRNA genes and intraspecies discrimination of Listeria monocytogenes strains by random amplified polymorphic DNA polymorphisms. Appl Environ Microbiol 59:304–308
8. Medrala D, Dabrowski W, Szymanska L (2003) Application of multiplex PCR in routine microbiological diagnostics of Listeria monocytogenes and Listeria sp. strains in a meat-processing plant. Pol J Food Nutr Sci 12:59–64
9. Oliveira M, Andrade G, Bernardo MGF (2003) Development of a fluorescent in situ hybridization protocol for the rapid detection and enumeration of Listeria monocytogenes in milk. Rev Port Ciênc Vet 98:119–124
10. Paillard D, Dubois V, Duran R, Nathier F, Guittet C, Caumette P, Quentin C (2003) Rapid identification of Listeria species by using restriction fragment length polymorphism of PCR-amplified 23S rRNA gene fragments. Appl Environ Microbiol 69:6386–6392
11. Johnson J, Jinneman K, Stelma G, Smith BG, Lye D, Messer J, Ulaszek J, Evsen L, Gendel S, Bennett RW, Swaminathan B, Pruckler J, Steigerwalt A, Kathariou S, Yildirim S, Volokhov D, Rasooly A, Chizhikov V, Wiedmann M, Fortes E, Duvall RE, Hitchins AD (2004) Natural atypical Listeria innocua strains with Listeria monocytogenes pathogenicity island 1 genes. Appl Environ Microbiol 70:4256–4266
12. Jianshun C, Lingli J, Xueyan C, Xiaokai L, Yang C, Ying Y, Guoming T, Dongyou L, Weihuan (2009) Listeria monocytogenes serovar 4a is a possible evolutionary intermediate between L. monocytogenes serovars 1/2a and 4b and L. innocua. J Microbiol Biotechnol 19:238–249
13. Ye K, Qiuqin Z, Yun J, Xinglian X, Jinxuan C, Guanghong Z (2012) Rapid detection of viable Listeria monocytogenes in chilled pork by real-time reverse-transcriptase PCR. Food Control 25:117–124
14. Park S, Jung J, Choi S, Oh Y, Lee J, Chae H, Ryu S, Jung H, Park G, Choi S, Kim B, Kim J, Zoo Chae Y, Jung B, Lee M, Kim H (2012) Molecular characterization of Listeria monocytogenes based on the PFGE and RAPD in Korea. Adv Microbiol 2:605–616
15. Al-Mariri A, Younes AA, Ramadan L (2013) Prevalence of Listeria spp. in raw milk in Syria. Bulg J Vet Med 16:112–122
16. Kumar A, Grover S, Batish VK (2014) A multiplex PCR assay based on 16S rRNA and hly for rapid detection of L. monocytogenes in Milk. J Food Meas charact 8:155–163
17. Bruce JL, Hubner RJ, Cole EM, McDowell CI, Webster JA (1995) Sets of EcoRI fragments containing ribosomal RNA sequences are conserved among different strains of Listeria monocytogenes. Proc Natl Acad Sci 92:5229–5234
18. Graves LM, Swaminathan B (2001) PulseNet standardized protocol for subtyping Listeria monocytogenes by macrorestriction and pulsed-field gel electrophoresis. Int J Food Microbiol 65:55–62
19. Jeffers GT, Bruce JL, McDonough P, Scarlett J, Boor KJ, Wiedmann M (2001) Comparative genetic characterization of Listeria monocytogenes isolates from human and animal listeriosis cases. Microbiology 147:1095–1104
20. Katzav M, Hyvönen P, Muje P, Rantala L, Von Wright A (2006) Pulsed-field gel electrophoresis typing of Listeria monocytogenes isolated in two Finnish fish farms. J Food Prot 69:1443–1447
21. Anonymous (1997) EN ISO 11290-1 Microbiology of food and animal feeding stuffs - Horizontal method for the detection and enumeration of Listeria monocytogenes—Part 1: Detection. International Organization for Standardisation, Geneva
22. Seeliger HPR, Jones D (1986) Genus Listeria. In: Sneath PHA, Mair NS, Sharpe ME, Holt JG (eds) Bergey’s manual of systematic bacteriology, vol 2. Williams & Wilkins, Baltimore, pp 1235–1245
23. Lane DJ (1991) Nucleic acid techniques in bacterial systematic. In: Stackebrant E, Goodfellow M (eds) 16S/23S rRNA sequencing. Wiley, New York, pp 115–175
24. Notermans SH, Dufrenne J, Leimeister-Wachter M, Domann E, Chakraborty T (1991) Phosphatidylinositol-specific phospholipase C activity as a marker to distinguish between pathogenic and non-pathogenic Listeria species. Appl Environ Microbiol 57:2666–2670
25. Saitou N, Nei M (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4:406–425
26. Tamura K, Nei M, Kumar S (2004) Prospects for inferring very large phylogenies by using the neighbour joining method. Proc Natl Acad Sci 101:11030–11035
27. Felsenstein J (1985) Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39:783–791
28. Tamura K, Dudley J, Nei M, Kumar S (2007) MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol Biol Evol 24:1596–1599
29. Liu D (2006) Identification, subtyping and virulence determination of Listeria monocytogenes, an important foodborne pathogen. J Med Microbiol 55:645–659
30. Soni DK, Singh RK, Singh DV, Dubey SK (2014) Characterization of Listeria monocytogenes isolated from Ganges water, human clinical and milk samples at Varanasi, India. Infect Genet Evol 14:83–91
31. Anonymous (2004) Microbiological Risk Assessment Series, No. 5, Technical Report. WHO, Rome
32. Barbuddhe SB, Malik SVS, Kumar JA, Kalorey DR, Chakraborty T (2012) Epidemiology and risk management of listeriosis in India. Int J Food Microbiol 154:113–118
33. Sallen B, Rajoharison A, Desvarenne S, Quinn F, Mabilat C (1996) Comparative analysis of 16S and 23S rRNA sequences of Listeria species. Int J Syst Bacteriol 46:669–674
34. Barbuddhe SB, Chaudhari SP, Malik SVS (2002) The occurrence of pathogenic Listeria monocytogenes and antibodies against listeriolysin O in buffaloes. J Vet Med B 49:181–184
35. Rawool DB, Malik SVS, Barbuddhe SB, Shakuntala I, Aurora R (2007) A multiplex PCR for detection of virulence associated genes in Listeria monocytogenes. Int J Food Saf 9:56–62
36. Aurora R, Prakash A, Prakash S, Rawool DB, Barbuddhe SB (2008) Comparison of PI-PLC based assays and PCR along with in vivo pathogenicity tests for rapid detection of pathogenic Listeria monocytogenes. Food Control 19:641–647