Enrichments of gene replacement events by Agrobacterium-mediated recombinase-mediated cassette exchange

Molecular Breeding

Volumn 35, Issue 2, 2015, Pages

  Ebinuma, Hiroyasu ^a   Nakahama, Katsuhiko ^b   Nanto, Kazuya ^b  

^a SHINSHU UNIVERSITY   (Japan)

^b NIPPON PAPER INDUSTRIES CO   (Japan)

Author keywords

Gene replacement; Negative selection; RMCE

Indexed keywords

GENES; PLANTS (BOTANY);

AGROBACTERIUM MEDIATED; AGROBACTERIUM MEDIATED TRANSFORMATIONS; GENE REPLACEMENT; MARKER GENES; NEGATIVE SELECTION; NO + CO; RECOMBINASE-MEDIATED CASSETTE EXCHANGE; RECOMBINASES; TRANSGENE; TRANSGENIC TOBACCO PLANTS;

TOBACCO;

AGROBACTERIUM; NICOTIANA OBTUSIFOLIA; NICOTIANA TABACUM;

EID: 84924911631     PISSN: 13803743     EISSN: 15729788     Source Type: Journal    
DOI: 10.1007/s11032-015-0215-7     Document Type: Article

References (30)

1. Akiyoshi DE, Klee H, Amasino RM, Nester EW, Gorden MP (1984) T-DNA of Agrobacterium tumefaciens encodes an enzyme of cytokinin biosynthesis. Proc Natl Acad Sci USA 81:5994–5998
2. Araki H, Nakanishi N, Evans BR, Matsuzaki H, Jayaram M, Oshima Y (1992) Site-specific recombinase, R, encoded by yeast plasmid pSR1. J Mol Biol 225:25–37
3. Belhaj K, Chaparro-Garcia A, Kamoun S, Nekrasov V (2013) Plant genome editing made easy: targeted mutagenesis in model and crop plants using the CRISPR/Cas system. Plant Methods 9:39
4. Cai CQ, Doyon Y, Ainley WW, Miller JC, DeKelver RC, Moehle EA, Rock JM, Lee Y-L, Garrison R, Schulenberg L, Blue R, Worden A, Baker L, Faraji F, Zhang L, Holmes MC, Rebar EJ, Collingwood TN, Rubin-Wilson B, Gregory PD, Urnov FD, Petolino JF (2009) Targeted transgene integration in plant cells using designed zinc finger nucleases. Plant Mol Biol 69:699–709
5. de Pater S, Neuteboom LW, Pinas JE, Hooykaas PJJ, van der Zaal BJ (2009) ZFN-induced mutagenesis and gene-targeting in Arabidopsis through Agrobacterium-mediated floral dip transformation. Plant Biotechnol J 7:821–835
6. de Pater S, Pinas JE, Hooykaas PJJ, van der Zaal BJ (2013) ZFN-mediated gene targeting of the Arabidopsis protoporphyrinogen oxidase gene through Agrobacterium-mediated floral dip transformation. Plant Biotechnol J 11:510–515
7. Ebinuma H, Sugita K, Endo S, Matsunaga E, Yamada K (2005) Elimination of marker genes from transgenic plants using MAT vector systems. In: Pena L (ed) Methods in molecular biology (vol 286), transgenic plants. Humana Press, NJ, pp 237–253
8. Ebinuma H, Nanto K, Kasahara S, Komamine A (2012) Marker-free gene targeting by recombinase-mediated cassette exchange (RMCE). In: Dunwell J, Wetten A (eds) Methods in molecular biology 847, transgenic plants, 2nd edn. Springer, New York, pp 379–390
9. Endo M, Toki S (2014) Toward establishing an efficient and versatile gene targeting system in higher plants. Biocatal Agric Biotechnol 3:2–6
10. Li Z, Xing A, Moon BP, McCardell RP, Mills K, Falco SC (2009) Site-specific integration of transgenes in soybean via recombinase-mediated DNA cassette exchange. Plant Physiol 151:1087–1095
11. Li Z, Moon BP, Xing A, Liu ZB, McCardell RP, Damude HG, Falco SC (2010) Stacking multiple transgenes at a selected genomic site via repeated recombinase-mediated DNA cassette exchanges. Plant Physiol 154:622–631
12. Louwerse JD, van Lier MCM, van Der Steen DM, de Vlaam CMT, Hooykaas PJJ, Vergunst AC (2007) Stable recombinase-mediated cassette exchange in Arabidopsis using Agrobacterium tumefaciens. Plant Physiol 145:1282–1293
13. Maniatis T, Fritsh E, Sambrook J (1982) Molecular cloning: a laboratory manual. Cold Spring Harbor Laboratory Press, Cold Spring Harbor
14. Nagel R, Elliot A, Masel A, Birch RG, Manners JM (1990) Electroporation of binary Ti plasmid vector into Agrobacterium tumefaciens and Agrobacterium rhizogenesis. FEMS Microbiol Lett 67:325–328
15. Nanto K, Ebinuma H (2008) Marker-free site-specific integration plants. Transgenic Res 17:337–344
16. Nanto K, Yamada-Watanabe K, Ebinuma H (2005) Agrobacterium-mediated RMCE approach for gene replacement. Plant Biotechnol J 3:203–214
17. Nanto K, Sato K, Katayama Y, Ebinuma H (2009) Expression of a transgene exchanged by the recombinase-mediated cassette exchange (RMCE) method in plants. Plant Cell Rep 28:777–785
18. Qi Y, Zhang Y, Zhang F, Baller JA, Cleland SC, Ryu Y, Starker CG, Voytas DF (2013) Increasing frequencies of site-specific mutagenesis and gene targeting in Arabidopsis by manipulating DNA repair pathways. Genome Res 23:547–554
19. Schlaman HRM, Hooykaas PJJ (1997) Effectiveness of the bacterial gene codA encoding cytosine deaminase as a negative selectable marker in Agrobacterium-mediated plant transformation. Plant J 11:1377–1385
20. Shukla VK, Doyon Y, Miller J, DeKelver RC, Moehle EA, Worden SE, Mitchell JC, Arnold NL, Gopalan S, Meng X, Choi VM, Rock JM, Wu YY, Katabah GE, Zhifang G, McCaskill D, Simpson MA, Blakeslee B, Greenwalt SA, Butler HJ, Hinkley SJ, Zhang L, Rebar EJ, Gregory PD, Urnov FD (2009) Precise genome modification in the crop species Zea mays using zinc-finger nucleases. Nature 459:437–441
21. Singer K, Shiboleth YM, Li J, Tzfira T (2012) Formation of complex extrachromosomal T-DNA structures in Agrobacterium tumefaciens-infected plants. Plant Physiol 160:511–522
22. Srivastava V, Ow DW (2004) Marker-free site-specific gene integration in plants. Trends Biotechnol 22:627–629
23. Tinland B, Hohn B, Puchta H (1994) Agrobacterium tumefaciens transfers single-stranded transferred DNA (T-DNA) into the plant cell nucleus. Proc Natl Acad Sci USA 91:8000–8004
24. Townsend JA, Wright DA, Winfrey R, Fu F, Maeder ML, Joung JK, Voytas DF (2009) High-frequency modification of plant genes using zinc-finger nucleases. Nature 459:442–445
25. Turan S, Galla M, Ernst E, Qiao J, Voelkel C, Schiedlmeier B, Zehe C, Bode J (2011) Recombinase-mediated cassette exchange (RMCE): traditional concepts and current challenges. J Mol Biol 407:193–221
26. Turan S, Zehe C, Kuehle J, Qiaoc J, Bode J (2013) Recombinase-mediated cassette exchange (RMCE)—a rapidly-expanding toolbox for targeted genomic modifications. Gene 515:1–27
27. Tzfira T, Weinthal D, Marton I, Zeevi V, Zuker A, Vainstein A (2012) Genome modifications in plant cells by custom-made restriction enzymes. Plant Biotechnol J 10(4):373–389
28. Wang Y, Yau YY, Perkins-Balding D, Thomson JG (2011) Recombinase technology: applications and possibilities. Plant Cell Rep 30:267–285
29. Wright DA, Townsend JA, Winfrey RJ Jr, Irwin PA, Rajagopal J, Lonosky PM, Hall BD, Jondle MD, Voytas DF (2005) High-frequency homologous recombination in plants mediated by zinc-finger nucleases. Plant J 44:693–705
30. Zhang Y, Zhang F, Li C, Baller JA, Qi Y, Starker CG, Bogdanove AJ, Voytas DF (2013) Transcription activator-like effector nucleases enable efficient plant genome engineering. Plant Physiol 161:20–27