Complete genome sequence of Bifidobacterium animalis subsp. lactis A6, a probiotic strain with high acid resistance ability

Journal of Biotechnology

Volumn 200, Issue , 2015, Pages 8-9

  Sun, Erna ^a   Zhao, Liang ^b   Ren, Fazheng ^a   Liu, Songling ^c   Zhang, Ming ^b   Guo, Huiyuan ^a  

^a CHINA AGRICULTURAL UNIVERSITY   (China)

^b Higher Institution Engineering Research Center of Animal Product   (China)

^c Beijing Laboratory of Food Quality and Safety   (China)

Author keywords

Acid resistance; Bifidobacterium animalis subsp. lactis A6; Genome; Single molecule real time sequencing

Indexed keywords

GENES; GENETIC ENGINEERING; RNA;

BIFIDOBACTERIA; BIFIDOBACTERIUM ANIMALIS; COMPLETE GENOMES; CRITICAL FACTORS; PROBIOTIC STRAIN; REAL TIME; RRNA GENES; TRNA GENES;

ACID RESISTANCE;

ACID; BACTERIAL RNA; CYSTATHIONINE BETA LYASE; CYSTATHIONINE BETA SYNTHASE; GENOMIC DNA; PROBIOTIC AGENT; PROTON TRANSPORTING ADENOSINE TRIPHOSPHATE SYNTHASE; RIBOSOME RNA; TRANSFER RNA;

ACID TOLERANCE; ARTICLE; BACTERIAL CHROMOSOME; BACTERIAL GENOME; BACTERIAL STRAIN; BIFIDOBACTERIUM ANIMALIS; DNA BASE COMPOSITION; GENE SEQUENCE; NONHUMAN; NUCLEOTIDE SEQUENCE; PH; PRIORITY JOURNAL; SURVIVAL RATE; BIFIDOBACTERIUM; FECES; GENETICS; HUMAN; MICROBIOLOGY; MOLECULAR GENETICS; VERY ELDERLY;

BIFIDOBACTERIUM ANIMALIS SUBSP. LACTIS;

AGED, 80 AND OVER; BASE SEQUENCE; BIFIDOBACTERIUM; FECES; GENOME, BACTERIAL; HUMANS; HYDROGEN-ION CONCENTRATION; MOLECULAR SEQUENCE DATA; PROBIOTICS;

EID: 84924375778     PISSN: 01681656     EISSN: 18734863     Source Type: Journal    
DOI: 10.1016/j.jbiotec.2015.02.016     Document Type: Article

References (17)

1. Chin C.-S., Alexander D.H., Marks P., Klammer A.A., Drake J., Heiner C., Clum A., Copeland A., Huddleston J., Eichler E.E., Turner S.W., Korlach J. Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data. Nat. Methods 2013, 10:563.
2. Eid J., Fehr A., Gray J., Luong K., Lyle J., Otto G., Peluso P., Rank D., Baybayan P., Bettman B., Bibillo A., Bjornson K., Chaudhuri B., Christians F., Cicero R., Clark S., Dalal R., Dewinter A., Dixon J., Foquet M., Gaertner A., Hardenbol P., Heiner C., Hester K., Holden D., Kearns G., Kong X.X., Kuse R., Lacroix Y., Lin S., Lundquist P., Ma C.C., Marks P., Maxham M., Murphy D., Park I., Pham T., Phillips M., Roy J., Sebra R., Shen G., Sorenson J., Tomaney A., Travers K., Trulson M., Vieceli J., Wegener J., Wu D., Yang A., Zaccarin D., Zhao P., Zhong F., Korlach J., Turner S. Real-time DNA sequencing from single polymerase molecules. Science 2009, 323:133-138.
3. Fulde M., Willenborg J., Huber C., Hitzmann A., Willms D., Seitz M., Eisenreich W., Valentin-Weigand P., Goethe R. The arginine-ornithine antiporter ArcD contributes to biological fitness of Streptococcus suis. Front. Cell. Infect. Microbiol. 2014, 4.
4. Garrigues C., Johansen E., Pedersen M.B. Complete genome sequence of Bifidobacterium animalis subsp lactis BB-12, a widely consumed probiotic strain. J. Bacteriol. 2010, 192:2467-2468.
5. Guarner F., Malagelada J.R. Gut flora in health and disease. Lancet 2003, 361:512-519.
6. Jayamanne V.S., Adams M.R. Determination of survival, identity and stress resistance of probiotic bifidobacteria in bio-yoghurts. Lett. Appl. Microbiol. 2006, 42:189-194.
7. Jin J., Zhang B., Guo H., Cui J., Jiang L., Song S., Sun M., Ren F. Mechanism analysis of acid tolerance response of Bifidobacterium longum subsp longum BBMN 68 by gene expression profile using RNA-sequencing. PLoS ONE 2012, 7.
8. Liu L., Qin Y., Wang Y., Li H., Shang N., Li P. Complete genome sequence of Bifidobacterium animalis RH, a probiotic bacterium producing exopolysaccharides. J. Biotechnol. 2014, 189:86-87.
9. Matsumoto M., Ohishi H., Benno Y. H+-ATPase activity in Bifidobacterium with special reference to acid tolerance. Int. J. Food Microbiol. 2004, 93:109-113.
10. Matto J., Alakomi H.L., Vaari A., Virkajarvi K., Saarela M. Influence of processing conditions on Bifidobacterium animalis subsp lactis functionality with a special focus on acid tolerance and factors affecting it. Int. Dairy J. 2006, 16:1029-1037.
11. Overbeek R., Olson R., Pusch G.D., Olsen G.J., Davis J.J., Disz T., Edwards R.A., Gerdes S., Parrello B., Shukla M., Vonstein V., Wattam A.R., Xia F., Stevens R. The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST). Nucleic Acids Res. 2014, 42:D206-D214.
12. Sun Z., Chen X., Wang J., Gao P., Zhou Z., Ren Y., Sun T., Wang L., Meng H., Chen W., Zhang H. Complete genome sequence of probiotic Bifidobacterium animalis subsp lactis strain V9. J. Bacteriol. 2010, 192:4080-4081.
13. Ventura M., Canchaya C., van Sinderen D., Fitzgerald G.F., Zink R. Bifidobacterium lactis DSM 10140: identification of the atp (atpBEFHAGDC) operon and analysis of its genetic structure, characteristics, and phylogeny. Appl. Environ. Microbiol. 2004, 70:3110-3121.
14. Ventura M., Turroni F., Zomer A., Foroni E., Giubellini V., Bottacini F., Canchaya C., Claesson M.J., He F., Mantzourani M., Mulas L., Ferrarini A., Gao B., Delledonne M., Henrissat B., Coutinho P., Oggioni M., Gupta R.S., Zhang Z., Beighton D., Fitzgerald G.F., O'Toole P.W., van Sinderen D. The Bifidobacterium dentium Bd1 genome sequence reflects its genetic adaptation to the human oral cavity. PLoS Genet. 2009, 5.
15. Zhao L., Qiao X.W., Zhu J., Zhang X.Y., Jiang J.L., Hao Y.L., Ren F.Z. Correlations of fecal bacterial communities with age and living region for the elderly living in Bama, Guangxi, China. J. Microbiol. 2011, 49:186-192.
16. Zhao L.A., Xu W.T., Ibrahim S.A., Jin J.H., Feng J.N., Jiang J.L., Meng J.J., Ren F.Z. Effects of age and region on fecal microflora in elderly subjects living in Bama, Guangxi, China. Curr. Microbiol. 2011, 62:64-70.
17. Zhou Y., Liang Y., Lynch K.H., Dennis J.J., Wishart D.S. PHAST: a fast phage search tool. Nucleic Acids Res. 2011, 39:W347-W352.