Recombinase polymerase amplification-based assay to diagnose giardia in stool samples

American Journal of Tropical Medicine and Hygiene

Volumn 92, Issue 3, 2015, Pages 583-587

  Crannell, Zachary Austin ^a   Cabada, Miguel Mauricio ^b   Castellanos Gonzalez, Alejandro ^c   Irani, Ayesha ^c   White, Arthur Clinton ^c   Richards Kortum, Rebecca ^a  

^a RICE UNIVERSITY   (United States)

^b UNIVERSIDAD PERUANA CAYETANO HEREDIA   (Peru)

^c University of Texas Medical Branch School of Medicine   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CHILD; CYST (RESTING STAGE); DIAGNOSTIC TEST ACCURACY STUDY; DNA EXTRACTION; FECES ANALYSIS; GENE AMPLIFICATION; GIARDIA INTESTINALIS; GIARDIASIS; GOLD STANDARD; HUMAN; LIMIT OF DETECTION; MICROSCOPY; NONHUMAN; PARASITE IDENTIFICATION; PERU; POLYMERASE CHAIN REACTION; RECOMBINASE POLYMERASE AMPLIFICATION BASED GIARDIA ASSAY; REVIEW; SENSITIVITY AND SPECIFICITY; CHEMISTRY; FECES; ISOLATION AND PURIFICATION; METABOLISM; PARASITOLOGY; PROCEDURES;

GIARDIA; GIARDIA INTESTINALIS;

RECOMBINASE;

FECES; GIARDIA LAMBLIA; GIARDIASIS; HUMANS; PERU; POLYMERASE CHAIN REACTION; RECOMBINASES; SENSITIVITY AND SPECIFICITY;

EID: 84924275807     PISSN: 00029637     EISSN: 14761645     Source Type: Journal    
DOI: 10.4269/ajtmh.14-0593     Document Type: Review

References (24)

1. Walker CL, Rudan I, Liu L, Nair H, Theodoratou E, Bhutta ZA, O'Brien KL, Campbell H, Black RE, 2013. Global burden of childhood pneumonia and diarrhea. Lancet 381: 1405-1416.
2. Ross AG, Olds GR, Cripps AW, Farrar JJ, McManus DP, 2013. Enteropathogens and chronic illness in returning travelers. N Engl J Med 368: 1817-1825.
3. WHO, 2012. Cryptosporidiosis Surveillance-United States, 2009-2010 and Giardiasis Surveillance-United States, 2009-2010. Morbidity and Mortality Weekly Report: Centers for Disease Control and Prevention 61: 13-19.
4. Ignatius R, Gahutu JB, Klotz C, Steininger C, Shyirambere C, Lyng M, Musemakweri A, Aebischer T, Martus P, Harms G, Mockenhaupt FP, 2012. High prevalence of Giardia duodenalis assemblage B infection and association with underweight in Rwandan children. Plos Negl Trop Dis 6: e1677.
5. Ankarklev J, Jerlstrom-Hultqvist J, Ringqvist E, Troell K, Svard SG, 2010. Behind the smile: cell biology and disease mechanisms of Giardia species. Nat Rev Microbiol 8: 413-422.
6. Kotloff KL, Nataro JP, Blackwelder WC, Nasrin D, Farag TH, Panchalingam S, Wu Y, Sow SO, Sur D, Breiman RF, Faruque AS, Zaidi AK, Saha D, Alonso PL, Tamboura B, Sanogo D, Onwuchekwa U, Manna B, Ramamurthy T, Kanungo S, Ochieng JB, Omore R, Oundo JO, Hossain A, Das SK, Ahmed S, Qureshi S, Quadri F, Adegbola RA, Antonio M, Hossain MJ, Akinsola A, Mandomando I, Nhampossa T, Acacio S, Biswas K, O'Reilly CE, Mintz ED, Berkeley LY, Muhsen K, Sommerfelt H, Robins-Browne RM, Levine MM, 2013. Burden and aetiology of diarrheal disease in infants and young children in developing countries (the Global Enteric Multicenter Study, GEMS): a prospective, case-control study. Lancet 382: 209-222.
7. Fletcher SM, Stark D, Harkness J, Ellisa J, 2012. Enteric protozoa in the developed world: a public health perspective. Clin Microbiol Rev 25: 420-449.
8. Huang DB, White AC, 2006. An updated review on Cryptosporidium and Giardia. Gastroenterol Clin North Am 35: 291-314.
9. Garcia LS, Shimizu RY, Novak S, Carroll M, Chan F, 2003. Commercial assay for detection of Giardia lamblia and Cryptosporidium parvum antigens in human fecal specimens by rapid solid-phase qualitative immunochromatography. J Clin Microbiol 41: 209-212.
10. Garcia LS, Shimizu RY, 1997. Evaluation of nine immunoassay kits (enzyme immunoassay and direct fluorescence) for detection of Giardia lamblia and Cryptosporidium parvum in human fecal specimens. J Clin Microbiol 35: 1526-1529.
11. Taniuchi M, Verweij JJ, Noor Z, Sobuz SU, van Lieshout L, Petri WA, Haque R, Houpt ER, 2011. High throughput multiplex PCR and probe-based detection with luminex beads for seven intestinal parasites. Am J Trop Med Hyg 84: 332-337.
12. Compton J, 1991. Nucleic-acid sequence-based amplification. Nature 350: 91-92.
13. Notomi T, Okayama H, Masubuchi H, Yonekawa T, Watanabe K, Amino N, Hase T, 2000. Loop-mediated isothermal amplification of DNA. Nucleic Acids Res 28: E63.
14. Demidov VV, 2002. Rolling-circle amplification in DNA diagnostics: the power of simplicity. Expert Rev Mol Diagn 2: 542-548.
15. Craw P, Balachandran W, 2012. Isothermal nucleic acid amplification technologies for point-of-care diagnostics: a critical review. Lab Chip 12: 2469-2486.
16. Piepenburg O, Williams CH, Stemple DL, Armes NA, 2006. DNA detection using recombination proteins. PLoS Biol 4: e204.
17. Rohrman B, Richards-Kortum R, 2012. A paper and plastic device for performing recombinase polymerase amplification of HIV DNA. Lab Chip 12: 3082-3088.
18. TwistDx Inc., 2012. Our Technology. Available at: http://www.twistdx.co.uk/our-technology/. Accessed June 27, 2012.
19. WHO, 2004. Training Manual on Diagnosis of Intestinal Parasites. Diseases SaIPUDoCoT, ed. Geneva: World Health Organization. Available at: http://whqlibdoc.who.int/hq/1998/WHO-CTD- SIP-98.2.pdf.
20. Crannell ZA, Castellanos-Gonzalez A, Irani A, Rohrman B, White AC, Richards-Kortum R, 2014. Nucleic acid test to diagnose cryptosporidiosis: lab assessment in animal and patient specimens. Anal Chem 86: 2565-2571.
21. Rohrman BA, Leautaud V, Molyneux E, Richards-Kortum RR, 2012. A lateral flow assay for quantitative detection of amplified HIV-1 RNA. PLoS ONE 7: e45611.
22. Stroup S, Tongjai S, Swai N, Maro A, Kibiki G, Houpt ER, 2012. Dual probe DNA capture for sensitive real-time PCR detection of Cryptosporidium and Giardia. Mol Cell Probes 26: 104-106.
23. Calderaro A, Gorrini C, Montecchini S, Peruzzi S, Piccolo G, Rossi S, Gargiulo F, Manca N, Dettori G, Chezzi C, 2010. Evaluation of a real-time polymerase chain reaction assay for the laboratory diagnosis of giardiasis. Diagn Microbiol Infect Dis 66: 261-267.
24. Monteiro L, Bonnemaison D, Vekris A, Petry KG, Bonnet J, Vidal R, Cabrita J, Megraud F, 1997. Complex polysaccharides as PCR inhibitors in feces: Helicobacter pylori model. J Clin Microbiol 35: 995-998.