-
3
-
-
69449098014
-
Estimating Bayes factors via thermodynamic integration and population MCMC
-
Calderhead, B., Girolami, M.: Estimating Bayes factors via thermodynamic integration and population MCMC. Comput. Stat. Data Anal. 53(12), 4028–4045 (2009)
-
(2009)
Comput. Stat. Data Anal.
, vol.53
, Issue.12
, pp. 4028-4045
-
-
Calderhead, B.1
Girolami, M.2
-
4
-
-
1842715143
-
Marginal likelihood from the Metropolis–Hastings output
-
Chib, S., Jeliazkov, I.: Marginal likelihood from the Metropolis–Hastings output. J. Am. Stat. Assoc. 96(453), 270–281 (2001)
-
(2001)
J. Am. Stat. Assoc.
, vol.96
, Issue.453
, pp. 270-281
-
-
Chib, S.1
Jeliazkov, I.2
-
5
-
-
84873622581
-
Properties of cell death models calibrated and compared using Bayesian approaches
-
Eydgahi, H., Chen, W.W., Muhlich, J.L., Vitkup, D., Tsitsiklis, J.N., Sorger, P.K.: Properties of cell death models calibrated and compared using Bayesian approaches. Mol. Syst. Biol. 9(1), 644 (2013)
-
(2013)
Mol. Syst. Biol.
, vol.9
, Issue.1
, pp. 644
-
-
Eydgahi, H.1
Chen, W.W.2
Muhlich, J.L.3
Vitkup, D.4
Tsitsiklis, J.N.5
Sorger, P.K.6
-
6
-
-
42149143421
-
Marginal likelihood estimation via power posteriors
-
Friel, N., Pettitt, A.N.: Marginal likelihood estimation via power posteriors. J. R. Stat. Soc. 70(3), 589–607 (2008)
-
(2008)
J. R. Stat. Soc.
, vol.70
, Issue.3
, pp. 589-607
-
-
Friel, N.1
Pettitt, A.N.2
-
7
-
-
84864020497
-
Estimating the evidence: a review
-
Friel, N., Wyse, J.: Estimating the evidence: a review. Stat. Neerl. 66(3), 288–308 (2012)
-
(2012)
Stat. Neerl.
, vol.66
, Issue.3
, pp. 288-308
-
-
Friel, N.1
Wyse, J.2
-
8
-
-
84964248577
-
Improving power posterior estimation of statistical evidence
-
Friel, N., Hurn, M., Wyse, J.: Improving power posterior estimation of statistical evidence. Stat. Comput. 6(1), 15–33 (2013)
-
(2013)
Stat. Comput.
, vol.6
, Issue.1
, pp. 15-33
-
-
Friel, N.1
Hurn, M.2
Wyse, J.3
-
9
-
-
0000736067
-
Simulating normalizing constants: From importance sampling to bridge sampling to path sampling
-
Gelman, A., Meng, X.: Simulating normalizing constants: From importance sampling to bridge sampling to path sampling. Stat. Sci. 13, 163–185 (1998)
-
(1998)
Stat. Sci.
, vol.13
, pp. 163-185
-
-
Gelman, A.1
Meng, X.2
-
11
-
-
0038563932
-
An adaptive Metropolis algorithm
-
Haario, H., Saksman, E., Tamminen, J.: An adaptive Metropolis algorithm. Bernoulli 7(2), 223–242 (2001)
-
(2001)
Bernoulli
, vol.7
, Issue.2
, pp. 223-242
-
-
Haario, H.1
Saksman, E.2
Tamminen, J.3
-
12
-
-
35348981375
-
Automated live cell imaging of green fluorescent protein degradation in individual fibroblasts
-
Halter, M., Tona, A., Bhadriraju, K., Plant, A.L., Elliott, J.T.: Automated live cell imaging of green fluorescent protein degradation in individual fibroblasts. Cytom. Part A 71(10), 827–834 (2007)
-
(2007)
Cytom. Part A
, vol.71
, Issue.10
, pp. 827-834
-
-
Halter, M.1
Tona, A.2
Bhadriraju, K.3
Plant, A.L.4
Elliott, J.T.5
-
13
-
-
79955488304
-
Dynamic analysis of stochastic transcription cycles
-
Harper, C.V., Finkenstädt, B., Woodcock, D.J., Friedrichsen, S., Semprini, S., Ashall, L., Spiller, D.G., Mullins, J.J., Rand, D.A., Davis, J.R., White, M.R.H.: Dynamic analysis of stochastic transcription cycles. PLoS Biol. 9(4), e1000,607 (2011)
-
(2011)
PLoS Biol.
, vol.9
, Issue.4
, pp. e1000,607
-
-
Harper, C.V.1
Finkenstädt, B.2
Woodcock, D.J.3
Friedrichsen, S.4
Semprini, S.5
Ashall, L.6
Spiller, D.G.7
Mullins, J.J.8
Rand, D.A.9
Davis, J.R.10
White, M.R.H.11
-
14
-
-
84888027235
-
High-dimensional Bayesian parameter estimation: case study for a model of JAK2/STAT5 signaling
-
Hug, S., Rau, A., Hasenaue, J., Bachmann, J., Klingmüller, U., Timmer, J., Theis, F.J.: High-dimensional Bayesian parameter estimation: case study for a model of JAK2/STAT5 signaling. Math. Biosci. 246, 293–304 (2013)
-
(2013)
Math. Biosci.
, vol.246
, pp. 293-304
-
-
Hug, S.1
Rau, A.2
Hasenaue, J.3
Bachmann, J.4
Klingmüller, U.5
Timmer, J.6
Theis, F.J.7
-
15
-
-
84964263464
-
Uncertainty in Biology: a computational modeling approach
-
Hug, S., Schmidl, D., Li, W.B., Greiter, M.B., Theis, F.J.: (2014) Uncertainty in Biology: a computational modeling approach, chap Bayesian model selection methods and their application to biological ODE systems (submitted to Springer)
-
(2014)
chap Bayesian model selection methods and their application to biological ODE systems (submitted to Springer)
-
-
Hug, S.1
Schmidl, D.2
Li, W.B.3
Greiter, M.B.4
Theis, F.J.5
-
18
-
-
84881027074
-
Model selection in systems and synthetic biology
-
Kirk, P., Thorne, T., Stumpf, M.P.: Model selection in systems and synthetic biology. Curr. Opin. Biotechnol. 24, 767–774 (2013)
-
(2013)
Curr. Opin. Biotechnol.
, vol.24
, pp. 767-774
-
-
Kirk, P.1
Thorne, T.2
Stumpf, M.P.3
-
19
-
-
78649402706
-
Computation of the posterior entropy in a Bayesian framework for parameter estimation in biological networks
-
Kramer, A., Hasenauer, J., Allgöwer, F., Radde, N.: Computation of the posterior entropy in a Bayesian framework for parameter estimation in biological networks. In: Proceedings of the IEEE Multi-conference on System and Control, pp 493–498, Yokohama (2010)
-
(2010)
Proceedings of the IEEE Multi-conference on System and Control, pp 493–498, Yokohama
-
-
Kramer, A.1
Hasenauer, J.2
Allgöwer, F.3
Radde, N.4
-
20
-
-
33644826560
-
Computing Bayes factors using thermodynamic integration
-
Lartillot, N., Philippe, H.: Computing Bayes factors using thermodynamic integration. Syst. Biol. 55(2), 195–207 (2006)
-
(2006)
Syst. Biol.
, vol.55
, Issue.2
, pp. 195-207
-
-
Lartillot, N.1
Philippe, H.2
-
21
-
-
0031514994
-
Estimating Bayes factors via posterior simulation with the Laplace-Metropolis estimator
-
Lewis, S.M., Raftery, A.E.: Estimating Bayes factors via posterior simulation with the Laplace-Metropolis estimator. J. Am. Stat. Assoc. 92(438), 648–655 (1997)
-
(1997)
J. Am. Stat. Assoc.
, vol.92
, Issue.438
, pp. 648-655
-
-
Lewis, S.M.1
Raftery, A.E.2
-
22
-
-
80053201944
-
A tutorial on Bayes factor estimation with the product space method
-
Lodewyckx, T., Kim, W., Lee, M.D., Tuerlinckx, F., Kuppens, P., Wagenmakers, E.J.: A tutorial on Bayes factor estimation with the product space method. J. Math. Psychol. 55(5), 331–347 (2011)
-
(2011)
J. Math. Psychol.
, vol.55
, Issue.5
, pp. 331-347
-
-
Lodewyckx, T.1
Kim, W.2
Lee, M.D.3
Tuerlinckx, F.4
Kuppens, P.5
Wagenmakers, E.J.6
-
23
-
-
1842539381
-
Bayesian model assessment in factor analysis
-
Lopes, H.F., West, M.: Bayesian model assessment in factor analysis. Stat. Sin. 14(1), 41–68 (2004)
-
(2004)
Stat. Sin.
, vol.14
, Issue.1
, pp. 41-68
-
-
Lopes, H.F.1
West, M.2
-
24
-
-
0043226242
-
Notes on the adaptive Simpson quadrature routine
-
Lyness, J.N.: Notes on the adaptive Simpson quadrature routine. JACM 16(3), 483–495 (1969)
-
(1969)
JACM
, vol.16
, Issue.3
, pp. 483-495
-
-
Lyness, J.N.1
-
25
-
-
51749122228
-
Dynamical modeling and multi-experiment fitting with PottersWheel
-
Maiwald, T., Timmer, J.: Dynamical modeling and multi-experiment fitting with PottersWheel. Bioinformatics 24(18), 2037–2043 (2008)
-
(2008)
Bioinformatics
, vol.24
, Issue.18
, pp. 2037-2043
-
-
Maiwald, T.1
Timmer, J.2
-
26
-
-
21444451325
-
Simulating ratios of normalizing constants via a simple identity: a theoretical exploration
-
Meng, X.L., Wong, W.H.: Simulating ratios of normalizing constants via a simple identity: a theoretical exploration. Stat. Sin. 6(4), 831–860 (1996)
-
(1996)
Stat. Sin.
, vol.6
, Issue.4
, pp. 831-860
-
-
Meng, X.L.1
Wong, W.H.2
-
27
-
-
0000273048
-
Annealed importance sampling
-
Neal, R.M.: Annealed importance sampling. Stat. Comput. 11(2), 125–139 (2001)
-
(2001)
Stat. Comput.
, vol.11
, Issue.2
, pp. 125-139
-
-
Neal, R.M.1
-
28
-
-
84964238051
-
-
The Harmonic Mean of the Likelihood, Worst Monte Carlo Method Ever
-
Neal, R.: The Harmonic Mean of the Likelihood: Worst Monte Carlo Method Ever (2008) http://radfordneal.wordpress.com/2008/08/17/the-harmonic-mean-of-the-likelihood-worst-monte-carlo-method-ever
-
(2008)
R.
-
-
-
29
-
-
0003078723
-
Approximate Bayesian inference with weighted likelihood bootstrap
-
Newton, M., Raftery, A.: Approximate Bayesian inference with weighted likelihood bootstrap. J. R. Stat. Soc. 56, 3–48 (1994)
-
(1994)
J. R. Stat. Soc.
, vol.56
, pp. 3-48
-
-
Newton, M.1
Raftery, A.2
-
30
-
-
84964224056
-
-
Oates, C.J., Papamarkou, T., Girolami, M.: The controlled thermodynamic integral for Bayesian model comparison. (2014)
-
Oates, C.J., Papamarkou, T., Girolami, M.: The controlled thermodynamic integral for Bayesian model comparison. (2014) arXiv:1404.5053v2
-
-
-
-
31
-
-
0010158799
-
Stopping the Gibbs sampler, the use of morphology, and other issues in spatial statistics
-
Raftery, A., Banfield, J.: Stopping the Gibbs sampler, the use of morphology, and other issues in spatial statistics. Ann. Inst. Stat. Math. 43(1), 32–43 (1991)
-
(1991)
Ann. Inst. Stat. Math.
, vol.43
, Issue.1
, pp. 32-43
-
-
Raftery, A.1
Banfield, J.2
-
32
-
-
0000783674
-
Hypothesis testing and model selection
-
Gilks WR, Richardson S, (eds), Springer, Berlin
-
Raftery, A.: Hypothesis testing and model selection. In: Gilks, W.R., Richardson, S. (eds.) Markov chain Monte Carlo in practice, pp. 163–187. Springer, Berlin (1996)
-
(1996)
Markov chain Monte Carlo in practice
, pp. 163-187
-
-
Raftery, A.1
-
34
-
-
84864498617
-
Bayesian model selection validates a biokinetic model for Zirconium processing in humans. BMC Syst
-
Schmidl, D., Hug, S., Li, W.B., Greiter, M.B., Theis, F.J.: Bayesian model selection validates a biokinetic model for Zirconium processing in humans. BMC Syst. Biol. 6(1), 95 (2012)
-
(2012)
Biol
, vol.6
, Issue.1
, pp. 95
-
-
Schmidl, D.1
Hug, S.2
Li, W.B.3
Greiter, M.B.4
Theis, F.J.5
-
35
-
-
35148901361
-
Nested sampling for general Bayesian computation
-
Skilling, J.: Nested sampling for general Bayesian computation. Bayesian Anal. 1(4), 833–859 (2006)
-
(2006)
Bayesian Anal.
, vol.1
, Issue.4
, pp. 833-859
-
-
Skilling, J.1
-
36
-
-
84891892050
-
Reverse engineering and identification in systems biology: strategies, perspectives and challenges
-
Villaverde, A.F., Banga, J.R.: Reverse engineering and identification in systems biology: strategies, perspectives and challenges. J. R. Soc. Interface 11(91), 4365–4391 (2014)
-
(2014)
J. R. Soc. Interface
, vol.11
, Issue.91
, pp. 4365-4391
-
-
Villaverde, A.F.1
Banga, J.R.2
-
37
-
-
77956634296
-
Inferring signaling pathway topologies from multiple perturbation measurements of specific biochemical species
-
Xu, T.R., Vyshemirsky, V., Gormand, A., von Kriegsheim, A., Girolami, M., Baillie, G.S., Ketley, D., Dunlop, A.J., Milligan, G., Houslay, M.D., Kolch, W.: Inferring signaling pathway topologies from multiple perturbation measurements of specific biochemical species. Sci. Signal. 3(113), ra20 (2010)
-
(2010)
Sci. Signal.
, vol.3
, Issue.113
, pp. ra20
-
-
Xu, T.R.1
Vyshemirsky, V.2
Gormand, A.3
von Kriegsheim, A.4
Girolami, M.5
Baillie, G.S.6
Ketley, D.7
Dunlop, A.J.8
Milligan, G.9
Houslay, M.D.10
Kolch, W.11
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