-
1
-
-
13844253947
-
SAXS and the working protein
-
Nagar, B. & Kuriyan, J. SAXS and the working protein. Structure 13, 169-170 (2005).
-
(2005)
Structure
, vol.13
, pp. 169-170
-
-
Nagar, B.1
Kuriyan, J.2
-
2
-
-
37149049312
-
X-ray solution scattering (SAXS) combined with crystallography and computation: Defning accurate macromolecular structures, conformations and assemblies in solution
-
Putnam, C.D., Hammel, M., Hura, G.L. & Tainer, J.A. X-ray solution scattering (SAXS) combined with crystallography and computation: defning accurate macromolecular structures, conformations and assemblies in solution. Q. Rev. Biophys. 40, 191-285 (2007).
-
(2007)
Q. Rev. Biophys.
, vol.40
, pp. 191-285
-
-
Putnam, C.D.1
Hammel, M.2
Hura, G.L.3
Tainer, J.A.4
-
3
-
-
84868248266
-
12-dependent methyltransferase complexes revealed by small-angle X-ray scattering
-
12-dependent methyltransferase complexes revealed by small-angle X-ray scattering. J. Am. Chem. Soc. 134, 17945-17954 (2012).
-
(2012)
J. Am. Chem. Soc.
, vol.134
, pp. 17945-17954
-
-
Ando, N.1
-
4
-
-
84855494566
-
Structural interconversions modulate activity of Escherichia coli ribonucleotide reductase
-
Ando, N. et al. Structural interconversions modulate activity of Escherichia coli ribonucleotide reductase. Proc. Natl. Acad. Sci. USA 108, 21046-21051 (2011).
-
(2011)
Proc. Natl. Acad. Sci. USA
, vol.108
, pp. 21046-21051
-
-
Ando, N.1
-
5
-
-
79958045453
-
Characterizing fexible and intrinsically unstructured biological macromolecules by SAS using the Porod-Debye law
-
Rambo, R.P. & Tainer, J.A. Characterizing fexible and intrinsically unstructured biological macromolecules by SAS using the Porod-Debye law. Biopolymers 95, 559-571 (2011).
-
(2011)
Biopolymers
, vol.95
, pp. 559-571
-
-
Rambo, R.P.1
Tainer, J.A.2
-
6
-
-
0033621117
-
Compactness of the denatured state of a fast-folding protein measured by submillisecond small-angle X-ray scattering
-
Pollack, L. et al. Compactness of the denatured state of a fast-folding protein measured by submillisecond small-angle X-ray scattering. Proc. Natl. Acad. Sci. USA 96, 10115-10117 (1999).
-
(1999)
Proc. Natl. Acad. Sci. USA
, vol.96
, pp. 10115-10117
-
-
Pollack, L.1
-
7
-
-
0035926229
-
Time resolved collapse of a folding protein observed with small angle X-ray scattering
-
Pollack, L. et al. Time resolved collapse of a folding protein observed with small angle X-ray scattering. Phys. Rev. Lett. 86, 4962-4965 (2001).
-
(2001)
Phys. Rev. Lett.
, vol.86
, pp. 4962-4965
-
-
Pollack, L.1
-
8
-
-
77950223101
-
Small-angle scattering for structural biology: Expanding the frontier while avoiding the pitfalls
-
Jacques, D.A. & Trewhella, J. Small-angle scattering for structural biology: expanding the frontier while avoiding the pitfalls. Protein Sci. 19, 642-657 (2010).
-
(2010)
Protein Sci.
, vol.19
, pp. 642-657
-
-
Jacques, D.A.1
Trewhella, J.2
-
9
-
-
70349312916
-
BioXTAS RAW, a software program for high-throughput automated small-angle X-ray scattering data reduction and preliminary analysis
-
Nielsen, S.S. et al. BioXTAS RAW, a software program for high-throughput automated small-angle X-ray scattering data reduction and preliminary analysis. J. Appl. Crystallogr. 42, 959-964 (2009).
-
(2009)
J. Appl. Crystallogr.
, vol.42
, pp. 959-964
-
-
Nielsen, S.S.1
-
10
-
-
79955846859
-
SAXS Studies of ion-nucleic acid interactions
-
Pollack, L. SAXS Studies of ion-nucleic acid interactions. Annu. Rev. Biophys. 40, 225-242 (2011).
-
(2011)
Annu. Rev. Biophys.
, vol.40
, pp. 225-242
-
-
Pollack, L.1
-
11
-
-
84885861180
-
Impact and progress in small and wide angle X-ray scattering (SAXS and WAXS)
-
Graewert, M.A. & Svergun, D.I. Impact and progress in small and wide angle X-ray scattering (SAXS and WAXS). Curr. Opin. Struct. Biol. 23, 748-754 (2013).
-
(2013)
Curr. Opin. Struct. Biol.
, vol.23
, pp. 748-754
-
-
Graewert, M.A.1
Svergun, D.I.2
-
12
-
-
84862222355
-
Publication guidelines for structural modelling of small-angle scattering data from biomolecules in solution
-
Jacques, D.A., Guss, J.M., Svergun, D.I. & Trewhella, J. Publication guidelines for structural modelling of small-angle scattering data from biomolecules in solution. Acta Crystallogr. Sect. D 68, 620-626 (2012).
-
(2012)
Acta Crystallogr. Sect. D
, vol.68
, pp. 620-626
-
-
Jacques, D.A.1
Guss, J.M.2
Svergun, D.I.3
Trewhella, J.4
-
13
-
-
84867742972
-
Advances in X-ray scattering: From solution SAXS to achievements with coherent beams
-
Pérez, J. & Nishino, Y. Advances in X-ray scattering: from solution SAXS to achievements with coherent beams. Curr. Opin. Struct. Biol. 22, 670-678 (2012).
-
(2012)
Curr. Opin. Struct. Biol.
, vol.22
, pp. 670-678
-
-
Pérez, J.1
Nishino, Y.2
-
15
-
-
0026910457
-
Determination of the regularization parameter in indirect-transform methods using perceptual criteria
-
Svergun, D.I. Determination of the regularization parameter in indirect-transform methods using perceptual criteria. J. Appl. Crystallogr. 25, 495-503 (1992).
-
(1992)
J. Appl. Crystallogr.
, vol.25
, pp. 495-503
-
-
Svergun, D.I.1
-
16
-
-
33645214738
-
ATSAS 2.1, a program package for small-angle scattering data analysis
-
Konarev, P.V., Petoukhov, M.V., Volkov, V.V. & Svergun, D.I. ATSAS 2.1, a program package for small-angle scattering data analysis. J. Appl. Crystallogr. 39, 277-286 (2006).
-
(2006)
J. Appl. Crystallogr.
, vol.39
, pp. 277-286
-
-
Konarev, P.V.1
Petoukhov, M.V.2
Volkov, V.V.3
Svergun, D.I.4
-
17
-
-
0141484613
-
PRIMUS: A Windows PC-based system for small-angle scattering data analysis
-
Konarev, P.V., Volkov, V.V., Sokolova, A., Koch, M.H.J. & Svergun, D.I. PRIMUS: a Windows PC-based system for small-angle scattering data analysis. J. Appl. Crystallogr. 36, 1277-1282 (2003).
-
(2003)
J. Appl. Crystallogr.
, vol.36
, pp. 1277-1282
-
-
Konarev, P.V.1
Volkov, V.V.2
Sokolova, A.3
Koch, M.H.J.4
Svergun, D.I.5
-
18
-
-
77954280480
-
FoXS: A web server for rapid computation and ftting of SAXS profles
-
Schneidman-Duhovny, D., Hammel, M. & Sali, A. FoXS: A web server for rapid computation and ftting of SAXS profles. Nucleic Acids Res. 38, W540-W544 (2010).
-
(2010)
Nucleic Acids Res.
, vol.38
, pp. W540-W544
-
-
Schneidman-Duhovny, D.1
Hammel, M.2
Sali, A.3
-
19
-
-
68349097394
-
Robust, high-throughput solution structural analyses by small angle X-ray scattering (SAXS)
-
Hura, G.L. et al. Robust, high-throughput solution structural analyses by small angle X-ray scattering (SAXS). Nat. Methods 6, 606-612 (2009).
-
(2009)
Nat. Methods
, vol.6
, pp. 606-612
-
-
Hura, G.L.1
-
20
-
-
80053001906
-
Automated microfuidic sample-preparation platform for high-throughput structural investigation of proteins by small-angle X-ray scattering
-
Lafeur, J.P. et al. Automated microfuidic sample-preparation platform for high-throughput structural investigation of proteins by small-angle X-ray scattering. J. Appl. Crystallogr. 44, 1090-1099 (2011).
-
(2011)
J. Appl. Crystallogr.
, vol.44
, pp. 1090-1099
-
-
Lafeur, J.P.1
-
21
-
-
3843074353
-
Liquid-chromatography-coupled SAXS for accurate sizing of aggregating proteins
-
Mathew, E., Mirza, A. & Menhart, N. Liquid-chromatography-coupled SAXS for accurate sizing of aggregating proteins. J. Synchrotr. Radiat. 11, 314-318 (2004).
-
(2004)
J. Synchrotr. Radiat.
, vol.11
, pp. 314-318
-
-
Mathew, E.1
Mirza, A.2
Menhart, N.3
-
22
-
-
84859780873
-
High-throughput biological small-angle X-ray scattering with a robotically loaded capillary cell
-
Nielsen, S.S., Møller, M. & Gillilan, R.E. High-throughput biological small-angle X-ray scattering with a robotically loaded capillary cell. J. Appl. Crystallogr. 45, 213-223 (2012).
-
(2012)
J. Appl. Crystallogr.
, vol.45
, pp. 213-223
-
-
Nielsen, S.S.1
Møller, M.2
Gillilan, R.E.3
-
23
-
-
78651087678
-
New beamline dedicated to solution scattering from biological macromolecules at the ESRF
-
Pernot, P. et al. New beamline dedicated to solution scattering from biological macromolecules at the ESRF. J. Phys. Confer. Ser. 247, 012009 (2010).
-
(2010)
J. Phys. Confer. Ser.
, vol.247
, pp. 012009
-
-
Pernot, P.1
-
24
-
-
51949084084
-
Automated sample-changing robot for solution scattering experiments at the EMBL Hamburg SAXS station X33
-
Round, A.R. et al. Automated sample-changing robot for solution scattering experiments at the EMBL Hamburg SAXS station X33. J. Appl. Crystallogr. 41, 913-917 (2008).
-
(2008)
J. Appl. Crystallogr.
, vol.41
, pp. 913-917
-
-
Round, A.R.1
-
25
-
-
0141571313
-
High-resolution wide-angle X-ray scattering of protein solutions: Effect of beam dose on protein integrity
-
Fischetti, R.F. et al. High-resolution wide-angle X-ray scattering of protein solutions: effect of beam dose on protein integrity. J. Synchrotr. Radiat. 10, 398-404 (2003).
-
(2003)
J. Synchrotr. Radiat.
, vol.10
, pp. 398-404
-
-
Fischetti, R.F.1
-
26
-
-
11844264877
-
Radiation damage to a protein solution, detected by synchrotron X-ray small-angle scattering: Dose-related considerations and suppression by cryoprotectants
-
Kuwamoto, S., Akiyama, S. & Fujisawa, T. Radiation damage to a protein solution, detected by synchrotron X-ray small-angle scattering: dose-related considerations and suppression by cryoprotectants. J. Synchrotr. Radiat. 11, 462-468 (2004).
-
(2004)
J. Synchrotr. Radiat.
, vol.11
, pp. 462-468
-
-
Kuwamoto, S.1
Akiyama, S.2
Fujisawa, T.3
-
27
-
-
77949508010
-
Quality control of protein standards for molecular mass determinations by small-angle X-ray scattering
-
Akiyama, S. Quality control of protein standards for molecular mass determinations by small-angle X-ray scattering. J. Appl. Crystallogr. 43, 237-243 (2010).
-
(2010)
J. Appl. Crystallogr.
, vol.43
, pp. 237-243
-
-
Akiyama, S.1
-
28
-
-
34248397195
-
Accuracy of molecular mass determination of proteins in solution by small-angle X-ray scattering
-
Mylonas, E. & Svergun, D.I. Accuracy of molecular mass determination of proteins in solution by small-angle X-ray scattering. J. Appl. Crystallogr. 40, s245-s249 (2007).
-
(2007)
J. Appl. Crystallogr.
, vol.40
, pp. s245-s249
-
-
Mylonas, E.1
Svergun, D.I.2
-
29
-
-
20644467753
-
Glucose isomerase from Streptomyces rubiginosus: Potential molecular weight standard for small-angle X-ray scattering
-
Kozak, M. Glucose isomerase from Streptomyces rubiginosus: potential molecular weight standard for small-angle X-ray scattering. J. Appl. Cryst. 38, 555-558 (2005).
-
(2005)
J. Appl. Cryst.
, vol.38
, pp. 555-558
-
-
Kozak, M.1
-
30
-
-
84875692793
-
Protein instability following transport or storage on dry ice
-
Murphy, B.M. et al. Protein instability following transport or storage on dry ice. Nat. Methods 10, 278-279 (2013).
-
(2013)
Nat. Methods
, vol.10
, pp. 278-279
-
-
Murphy, B.M.1
-
31
-
-
0034484513
-
SAXS experiments on absolute scale with Kratky systems using water as a secondary standard
-
Orthaber, D., Bergmann, A. & Glatter, O. SAXS experiments on absolute scale with Kratky systems using water as a secondary standard. J. Appl. Crystallogr. 33, 218-225 (2000).
-
(2000)
J. Appl. Crystallogr.
, vol.33
, pp. 218-225
-
-
Orthaber, D.1
Bergmann, A.2
Glatter, O.3
-
32
-
-
0000403125
-
Small-angle scattering: Information content and error analysis
-
Moore, P.B. Small-angle scattering: information content and error analysis. J. Appl. Crystallogr. 13, 168-175 (1980).
-
(1980)
J. Appl. Crystallogr.
, vol.13
, pp. 168-175
-
-
Moore, P.B.1
-
33
-
-
33645235265
-
Structural basis of hepatocyte growth factor/scatter factor and MET signalling
-
Gherardi, E. et al. Structural basis of hepatocyte growth factor/scatter factor and MET signalling. Proc. Natl. Acad. Sci. USA 103, 4046-4051 (2006).
-
(2006)
Proc. Natl. Acad. Sci. USA
, vol.103
, pp. 4046-4051
-
-
Gherardi, E.1
-
34
-
-
0033001996
-
Restoring low-resolution structure of biological macromolecules from solution scattering using simulated annealing
-
Svergun, D.I. Restoring low-resolution structure of biological macromolecules from solution scattering using simulated annealing. Biophys. J. 76, 2879-2886 (1999).
-
(1999)
Biophys. J.
, vol.76
, pp. 2879-2886
-
-
Svergun, D.I.1
-
35
-
-
62649139615
-
DAMMIF, a program for rapid ab initio shape determination in small-angle scattering
-
Franke, D. & Svergun, D.I. DAMMIF, a program for rapid ab initio shape determination in small-angle scattering. J. Appl. Crystallogr. 42, 342-346 (2009).
-
(2009)
J. Appl. Crystallogr.
, vol.42
, pp. 342-346
-
-
Franke, D.1
Svergun, D.I.2
-
36
-
-
75649147383
-
Determination of the molecular weight of proteins in solution from a single small-angle X-ray scattering measurement on a relative scale
-
Fischer, H., Oliveira Neto, M.d., Napolitano, H.B., Polikarpov, I. & Craievich, A.F. Determination of the molecular weight of proteins in solution from a single small-angle X-ray scattering measurement on a relative scale. J. Appl. Crystallogr. 43, 101-109 (2009).
-
(2009)
J. Appl. Crystallogr.
, vol.43
, pp. 101-109
-
-
Fischer, H.1
Oliveira Neto, M.D.2
Napolitano, H.B.3
Polikarpov, I.4
Craievich, A.F.5
-
37
-
-
84876800465
-
Accurate assessment of mass, models and resolution by small-angle scattering
-
Rambo, R.P. & Tainer, J.A. Accurate assessment of mass, models and resolution by small-angle scattering. Nature 496, 477-481 (2013).
-
(2013)
Nature
, vol.496
, pp. 477-481
-
-
Rambo, R.P.1
Tainer, J.A.2
-
38
-
-
84859782518
-
New developments in the ATSAS program package for small-angle scattering data analysis
-
Petoukhov, M.V. et al. New developments in the ATSAS program package for small-angle scattering data analysis. J. Appl. Crystallogr. 45, 342-350 (2012).
-
(2012)
J. Appl. Crystallogr.
, vol.45
, pp. 342-350
-
-
Petoukhov, M.V.1
-
39
-
-
0028871804
-
How to measure and predict the molar absorption coeffcient of a protein
-
Pace, C.N., Vajdos, F., Fee, L., Grimsley, G. & Gray, T. How to measure and predict the molar absorption coeffcient of a protein. Protein Sci. 4, 2411-2423 (1995).
-
(1995)
Protein Sci.
, vol.4
, pp. 2411-2423
-
-
Pace, C.N.1
Vajdos, F.2
Fee, L.3
Grimsley, G.4
Gray, T.5
-
40
-
-
0001912129
-
A large-format high-resolution area X-ray detector based on a fber-optically bonded charge-coupled device (CCD)
-
Tate, M.W. et al. A large-format high-resolution area X-ray detector based on a fber-optically bonded charge-coupled device (CCD). J. Appl. Crystallogr. 28, 196-205 (1995).
-
(1995)
J. Appl. Crystallogr.
, vol.28
, pp. 196-205
-
-
Tate, M.W.1
-
41
-
-
38349152753
-
High hydrostatic pressure small-angle X-ray scattering cell for protein solution studies featuring diamond windows and disposable sample cells
-
Ando, N., Chenevier, P., Novak, M., Tate, M.W. & Gruner, S.M. High hydrostatic pressure small-angle X-ray scattering cell for protein solution studies featuring diamond windows and disposable sample cells. J. Appl. Crystallogr. 41, 167-175 (2008).
-
(2008)
J. Appl. Crystallogr.
, vol.41
, pp. 167-175
-
-
Ando, N.1
Chenevier, P.2
Novak, M.3
Tate, M.W.4
Gruner, S.M.5
-
42
-
-
70350455500
-
Lessons from the crystallographic analysis of small molecule binding to human serum albumin
-
Curry, S. Lessons from the crystallographic analysis of small molecule binding to human serum albumin. Drug Metab. Pharmacokinetics 24, 342-357 (2009).
-
(2009)
Drug Metab. Pharmacokinetics
, vol.24
, pp. 342-357
-
-
Curry, S.1
-
43
-
-
0345169163
-
Small-angle scattering: A view on the properties, structures and structural changes of biological macromolecules in solution
-
Koch, M.H.J., Vachette, P. & Svergun, D.I. Small-angle scattering: a view on the properties, structures and structural changes of biological macromolecules in solution. Q. Rev. Biophys. 36, 147-227 (2003).
-
(2003)
Q. Rev. Biophys.
, vol.36
, pp. 147-227
-
-
Koch, M.H.J.1
Vachette, P.2
Svergun, D.I.3
-
44
-
-
0037701585
-
Uniqueness of ab initio shape determination in small-angle scattering
-
Volkov, V.V. & Svergun, D.I. Uniqueness of ab initio shape determination in small-angle scattering. J. Appl. Crystallogr. 36, 860-864 (2003).
-
(2003)
J. Appl. Crystallogr.
, vol.36
, pp. 860-864
-
-
Volkov, V.V.1
Svergun, D.I.2
-
45
-
-
0034634370
-
Crystallographic analysis reveals common modes of binding of medium and long-chain fatty acids to human serum albumin
-
Bhattacharya, A.A., Grüne, T. & Curry, S. Crystallographic analysis reveals common modes of binding of medium and long-chain fatty acids to human serum albumin. J. Mol. Biol. 303, 721-732 (2000).
-
(2000)
J. Mol. Biol.
, vol.303
, pp. 721-732
-
-
Bhattacharya, A.A.1
Grüne, T.2
Curry, S.3
-
46
-
-
0029185933
-
CRYSOL: A program to evaluate X-ray solution scattering of biological macromolecules from atomic coordinates
-
Svergun, D.I., Barberato, C. & Koch, M.H.J. CRYSOL: a program to evaluate X-ray solution scattering of biological macromolecules from atomic coordinates. J. Appl. Crystallogr. 28, 768-773 (1995).
-
(1995)
J. Appl. Crystallogr.
, vol.28
, pp. 768-773
-
-
Svergun, D.I.1
Barberato, C.2
Koch, M.H.J.3
-
47
-
-
84863012080
-
Ionic strength-dependent persistence lengths of single-stranded RNA and DNA
-
Chen, H. et al. Ionic strength-dependent persistence lengths of single-stranded RNA and DNA. Proc. Natl. Acad. Sci. USA 109, 799-804 (2012).
-
(2012)
Proc. Natl. Acad. Sci. USA
, vol.109
, pp. 799-804
-
-
Chen, H.1
|