Identification of GMOs by terahertz spectroscopy and ALAP–SVM

Optical and Quantum Electronics

Volumn 47, Issue 3, 2015, Pages 685-695

  Liu, Jianjun ^a   Li, Zhi ^a,b   Hu, Fangrong ^c   Chen, Tao ^c   Du, Yong ^d,e   Xin, Haitao ^e  

^a XIDIAN UNIVERSITY   (China)

^b GUILIN UNIVERSITY OF AEROSPACE TECHNOLOGY   (China)

^c GUILIN UNIVERSITY OF ELECTRONIC TECHNOLOGY   (China)

^d JIMEI UNIVERSITY   (China)

^e XIAMEN UNIVERSITY   (China)

Author keywords

Affinity propagation; Cotton; GMOs; SVM; Terahertz

Indexed keywords

CLUSTERING ALGORITHMS; COTTON; EXCITONS; PATTERN RECOGNITION; SUPPORT VECTOR MACHINES;

AFFINITY PROPAGATION; AFFINITY PROPAGATION CLUSTERING; DETECTION AND IDENTIFICATIONS; GENETICALLY MODIFIED COTTONS; GENETICALLY MODIFIED ORGANISMS; GMOS; TERA HERTZ; TRANSMITTANCE SPECTRA;

TERAHERTZ SPECTROSCOPY;

EID: 84924220986     PISSN: 03068919     EISSN: 1572817X     Source Type: Journal    
DOI: 10.1007/s11082-014-9944-9     Document Type: Article

References (24)

1. Ahmed, F.E.: Detection of genetically modified organisms in foods. Trends Biotechnol. 20(5), 215–223 (2002)
2. Alishahi, A., Farahmand, H., Prieto, N., Cozzolino, D.: Identification of transgenic foods using NIR spectroscopy: a review. Spectrochim. Acta A Mol. Biomol. Spectrosc. 75(1), 1–7 (2010)
3. Chen, T., Li, Z., Mo, W.: Identification of terahertz absorption spectra of explosives based on fuzzy pattern recognition. Chin. J. Instrum. 33, 2480–2486 (2012)
4. Chen, T., Li, Z., Mo, W.: Identification of biomolecules by terahertz spectroscopy and fuzzy pattern recognition. Spectrochim. Acta A Mol. Bimol. Spectrosc. 106, 48–53 (2013)
5. Chen, T., Li, Z., Mo, W.: Simultaneous quantitative determination of multicomponents in tablets based on terahertz time-domain spectroscopy. Spectrosc. Spectr. Anal. 33, 1220–1225 (2013)
6. Fiehn, O., Kopka, J., Trethewey, N., et al.: Identification of uncommon plant metabolites based on calculation of elemental compositions using gas chromatography and quadrupole mass spectrometry. Anal. Chem. 72(15), 3573–3580 (2000)
7. Frey, B.J., Dueck, D.: Clustering by passing messages between data points. Science 315, 972–976 (2007)
8. Liu, Y., Lyon, B.G., Windham, W.R., Lyon, C.E., Savage, E.M.: Prediction of physical, color, and sensory characteristics of broiler breasts by visible/near infrared reflectance spectroscopy. Poult. Sci. 83, 1467–1474 (2004)
9. Margarit, E., Reggiardo, M.I., et al.: Detection of BT transgenic maize in foodstuffs. Food Res. Int. 39(2), 250–255 (2006)
10. Markelz, A.G., Roitberg, A., Heilweil, E.J.: Pulsed terahertz spectroscopy of DNA, bovine serum albumin and collagen between 0.1 and 2.0 THz. Chem. Phys. Lett. 320(1–2), 42–48 (2000)
11. Milcamps, A., Rabe, S., Cade, R., et al.: Validity assessment of the detection method of maize event Bt10 through investigation of its molecular structure. J. Agric. Food Chem. 57(8), 3156–3163 (2009)
12. Moreira, I., Scarminio, I.S.: Chemometric discrimination of genetically modified Coffea arabica cultivars using spectroscopic and chromatographic fingerprints. Talanta 107, 245–254 (2013)
13. Munck, L., Moller, B., Jacobsen, S., Sondergaard, S.: Near infrared spectra indicate specific mutant endosperm genes and reveal a new mechanism for substituting starch with (1/3, 1/4)-b-glucan in barley. J. Cereal Sci. 40, 213–222 (2004)
14. Nakamura, K., Akiyama, H., Kawano, N., et al.: Evaluation of real-time PCR detection methods for detecting rice products contaminated by rice genetically modified with a CpTI-KDEL-T-nos transgenic construct. Food Chem. 141(3), 2618–2624 (2013)
15. Raamsdonk, L.W.D., Holst, C., Baeten, V., Berben, G., Boix, A., Jong, J.: New developments in the detection and identification of processed animal proteins in feeds. Anim. Feed Sci. Technol. 133(1–2), 63–83 (2007)
16. Rong, C.H.E.N., Yong-Feng, C.A.O., Hong, S.U.N.: Multi-class image classification with active learning and semi-supervised learning. Acta Autom. Sinic. 37, 954–962 (2011)
17. Small, G.W.: Chemometrics and near-infrared spectroscopy: avoiding the pitfalls. Trends Anal. Chem. 25(11), 1057–1066 (2006)
18. Upadhya, P.C., Shen, Y.C., Davies, A.G., Linfield, E.H.: Far-infrared vibrational modes of polycrystalline saccharides. Vib. Spectrosc. 35(1–2), 139–143 (2004)
19. Walther, M., Fischer, B.M., Jepsen, P.U.: Noncovalent intermolecular forces in polycrystalline and amorphous saccharides in the far infrared. Chem. Phys. 288(2–3), 261–268 (2003)
20. Xie, L.-J., Ying, Y.-B., Ying, T.-J., et al.: Application of Vis/NIR diffuse reflectance spectroscopy to the detection and identification of transgenic tomato leaf. Spectrosc. Spectr. Anal. 28, 1062–1066 (2008)
21. Yin, X.X., Ng, B.W.-H., Fischer, B.M., Ferguson, B., Abbott, D.: Support vector machine applications in terahertz pulsed signals feature sets. IEEE Sens. 7(12), 1597–1608 (2007)
22. Zhang, X.R., Liu, F.: A patten classification method based on GA and SVM. In: 6th International Conference on Signal Processing. vol. 1, pp. 110–113 (2002).
23. Zhang, T.J.: Research on measurement technology of bio-molecules based on terahertz time-domain spectroscopy. Zhejiang Univ. Hangzhou 23, 45–71 (2007)
24. Zhu, D., Liu, J.F., Tang, Y.B., et al.: A reusable DNA biosensor for the detection of genetically modified organism using magnetic bead-based electrochemiluminescence. Sens. Actuators B 149(1), 221–225 (2010)