Resting state BOLD functional connectivity at 3T: Spin echo versus gradient echo EPI

PLoS ONE

Volumn 10, Issue 3, 2015, Pages

  Chiacchiaretta, Piero ^a,b   Ferretti, Antonio ^a,b  

^a UNIVERSITY OF CHIETI   (Italy)

^b IRCCS NEUROMED   (Italy)

Author keywords

[No Author keywords available]

Indexed keywords

ADULT; ARTICLE; BOLD SIGNAL; DEFAULT MODE NETWORK; ECHO PLANAR IMAGING; FEMALE; FUNCTIONAL MAGNETIC RESONANCE IMAGING; GRADIENT ECHO ECHO PLANAR IMAGING; HUMAN; INTERMETHOD COMPARISON; MALE; NORMAL HUMAN; RESTING STATE NETWORK; SPIN ECHO ECHO PLANAR IMAGING; BRAIN; BRAIN ANGIOGRAPHY; CLINICAL TRIAL; DIAGNOSTIC IMAGING; MAGNETIC RESONANCE ANGIOGRAPHY; PROCEDURES; SIGNAL PROCESSING; THEORETICAL MODEL; VASCULARIZATION;

ADULT; BRAIN; CEREBRAL ANGIOGRAPHY; FEMALE; HUMANS; MAGNETIC RESONANCE ANGIOGRAPHY; MALE; MODELS, THEORETICAL; SIGNAL PROCESSING, COMPUTER-ASSISTED;

EID: 84924149642     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0120398     Document Type: Article

References (59)

1. Bandettini PA, Wong EC, Hinks RS, Tikofsky RS, Hyde JS (1992) Time course EPI of human brain function during task activation. Magn Reson Med 25: 390-397. PMID: 1614324
2. Kwong KK, Belliveau JW, Chesler DA, Goldberg IE, Weisskoff RM, et al. (1992) Dynamic magnetic resonance imaging of human brain activity during primary sensory stimulation. Proceedings of the National Academy of Sciences of the United States of America 89: 5675-5679. doi: 10.1073/pnas.89.12.5675 PMID: 1608978
3. Ogawa S, Tank DW, Menon R, Ellermann JM, Kim SG, et al. (1992) Intrinsic signal changes accompanying sensory stimulation: Functional brain mapping with magnetic resonance imaging. Proceedings of the National Academy of Sciences of the United States of America 89: 5951-5955. doi: 10.1073/pnas.89.12.5675 PMID: 1631079
4. Biswal B, Zerrin Yetkin F, Haughton VM, Hyde JS (1995) Functional connectivity in the motor cortex of resting human brain using echo?planar mri. Magnetic Resonance in Medicine 34: 537-541. doi: 10.1002/mrm.1910340409 PMID: 8524021
5. Fox MD, Raichle ME (2007) Spontaneous fluctuations in brain activity observed with functional magnetic resonance imaging. Nat Rev Neurosci 8: 700-711. doi: 10.1038/nrn2201 PMID: 17704812
6. Fox MD, Greicius M (2010) Clinical applications of resting state functional connectivity. Front Syst Neurosci 4: 19. doi: 10.3389/fnsys.2010.00019 PMID: 20592951
7. Brier MR, Thomas JB, Ances BM (2014) Network Dysfunction in Alzheimer's Disease: Refining the Disconnection Hypothesis. Brain Connectivity 4: 299-311. doi: 10.1089/brain.2014.0236 PMID: 24796856
8. Bandettini PA, Wong EC, Jesmanowicz A, Hinks RS, Hyde JS (1994) Spin-echo and gradient-echo EPI of human brain activation using BOLD contrast: a comparative study at 1.5 T. NMR Biomed 7: 12-20. PMID: 8068520
9. Harmer J, Sanchez-Panchuelo RM, Bowtell R, Francis ST (2012) Spatial location and strength of BOLD activation in high-spatial-resolution fMRI of the motor cortex: a comparison of spin echo and gradient echo fMRI at 7 T. NMR Biomed 25: 717-725. doi: 10.1002/nbm.1783 PMID: 21948326
10. Jones RA, Schirmer T, Lipinski B, Elbel GK, Auer DP (1998) Signal undershoots following visual stimulation: A comparison of gradient and spin-echo bold sequences. Magnetic Resonance in Medicine 40: 112-118. PMID: 9660561
11. Jochimsen TH, Norris DG, Mildner T, M ller HE (2004) Quantifying the intra- and extravascular contributions to spin-echo fMRI at 3 T. Magnetic Resonance in Medicine 52: 724-732. doi: 10.1002/mrm.20221 PMID: 15389950
12. Norris DG, Zysset S, Mildner T, Wiggins CJ (2002) An investigation of the value of spin-echo-based fMRI using a Stroop color-word matching task and EPI at 3 T. NeuroImage 15: 719-726. doi: 10.1006/nimg.2001.1005 PMID: 11848715
13. Parkes LM, Schwarzbach JV, Bouts AA, Deckers RHR, Pullens P, et al. (2005) Quantifying the spatial resolution of the gradient echo and spin echo BOLD response at 3 Tesla. Magn Reson Med 54: 1465-1472. doi: 10.1002/mrm.20712 PMID: 16276507
14. Norris DG (2012) Spin-echo fMRI: The poor relation? NeuroImage 62: 1109-1115. doi: 10.1016/j.neuroimage.2012.01.003 PMID: 22245351
15. Schmidt CF, Boesiger P, Ishai A (2005) Comparison of fMRI activation as measured with gradient- and spin-echo EPI during visual perception. NeuroImage 26: 852-859. doi: 10.1016/j.neuroimage.2005.02.043 PMID: 15955495
16. Schwarzbauer C, Mildner T, Heinke W, Brett M, Deichmann R (2010) Dual echo EPI-the method of choice for fMRI in the presence of magnetic field inhomogeneities? NeuroImage 49: 316-326. doi: 10. 1016/j.neuroimage.2009.08.032 PMID: 19699805
17. Uludaʇ K, Müller-Bierl B, Uʇurbil K (2009) An integrative model for neuronal activity-induced signal changes for gradient and spin echo functional imaging. NeuroImage 48: 150-165. doi: 10.1016/j.neuroimage.2009.05.051 PMID: 19481163
18. Halai AD, Welbourne SR, Embleton K, Parkes LM (2014) A comparison of dual gradient-echo and spinecho fMRI of the inferior temporal lobe. Hum Brain Mapp 35: 4118-4128. doi: 10.1002/hbm.22463 PMID: 24677506
19. Boynton GM, Engel SA, Glover GH, Heeger DJ (1996) Linear systems analysis of functional magnetic resonance imaging in human V1. J Neurosci 16: 4207-4221. PMID: 8753882
20. Park JC, Zhang X, Ferrera J, Hirsch J, Hood DC (2008) Comparison of contrast-response functions from multifocal visual-evoked potentials (mfVEPs) and functional MRI responses. J Vis 8: 8.1-.12. doi:10.1167/8.10.8
21. Chiacchiaretta P, Romani GL, Ferretti A (2013) Sensitivity of BOLD response to increasing visual contrast: spin echo versus gradient echo EPI. NeuroImage 82: 35-43. doi: 10.1016/j.neuroimage.2013.05.069 PMID: 23707589
22. Hulvershorn J, Bloy L, Gualtieri EE, Leigh JS, Elliott MA (2005) Spatial sensitivity and temporal response of spin echo and gradient echo bold contrast at 3 T using peak hemodynamic activation time. NeuroImage 24: 216-223. doi: 10.1016/j.neuroimage.2004.09.033 PMID: 15588613
23. Hulvershorn J, Bloy L, Gualtieri EE, Redmann CP, Leigh JS, et al. (2005) Temporal resolving power of spin echo and gradient echo fMRI at 3T with apparent diffusion coefficient compartmentalization. Hum Brain Mapp 25: 247-258. PMID: 15849715
24. Kohno S, Sawamoto N, Urayama SI, Aso T, Aso K, et al. (2009) Water-diffusion slowdown in the human visual cortex on visual stimulation precedes vascular responses. J Cereb Blood Flow Metab 29: 1197-1207. doi: 10.1038/jcbfm.2009.45 PMID: 19384332
25. Zhang N, Zhu X-H, ChenW(2008) Investigating the source of BOLD nonlinearity in human visual cortex in response to paired visual stimuli. NeuroImage 43: 204-212. doi: 10.1016/j.neuroimage.2008.06.033 PMID: 18657623
26. Zhang N, Yacoub E, Zhu X-H, Uʇurbil K, ChenW(2009) Linearity of blood-oxygenation-level dependent signal at microvasculature. NeuroImage 48: 313-318. doi: 10.1016/j.neuroimage.2009.06.071 PMID: 19580875
27. Koopmans PJ, Boyacioʇlu R, Barth M, Norris DG (2012) Whole brain, high resolution spin-echo resting state fMRI using PINS multiplexing at 7 T. NeuroImage 62: 1939-1946. doi: 10.1016/j.neuroimage.2012.05.080 PMID: 22683385
28. Cox RW (1996) AFNI: software for analysis and visualization of functional magnetic resonance neuroimages. Comput Biomed Res 29: 162-173. PMID: 8812068
29. Glover GH, Li TQ, Ress D (2000) Image?based method for retrospective correction of physiological motion effects in fMRI: RETROICOR. Magnetic Resonance in Medicine.
30. Jo HJ, Saad ZS, Simmons WK, Milbury LA, Cox RW (2010) Mapping sources of correlation in resting state FMRI, with artifact detection and removal. NeuroImage 52: 571-582. doi: 10.1016/j.neuroimage.2010.04.246 PMID: 20420926
31. Power JD, Barnes KA, Snyder AZ, Schlaggar BL, Petersen SE (2012) Spurious but systematic correlations in functional connectivity MRI networks arise from subject motion. NeuroImage 59: 2142-2154. doi: 10.1016/j.neuroimage.2011.10.018 PMID: 22019881
32. Power JD, Mitra A, Laumann TO, Snyder AZ, Schlaggar BL, et al. (2014) Methods to detect, characterize, and remove motion artifact in resting state fMRI. NeuroImage 84: 320-341. doi: 10.1016/j.neuroimage.2013.08.048 PMID: 23994314
33. Smyser CD, Inder TE, Shimony JS, Hill JE, Degnan AJ, et al. (2010) Longitudinal analysis of neural network development in preterm infants. Cereb Cortex 20: 2852-2862. doi: 10.1093/cercor/bhq035 PMID: 20237243
34. Fair DA, Nigg JT, Iyer S, Bathula D, Mills KL, et al. (2013) Distinct neural signatures detected for ADHD subtypes after controlling for micro-movements in resting state functional connectivity MRI data. Front Syst Neurosci 6: 80. doi: 10.3389/fnsys.2012.00080 PMID: 23382713
35. Greicius MD, Krasnow B, Reiss AL, Menon V (2003) Functional connectivity in the resting brain: a network analysis of the default mode hypothesis. Proceedings of the National Academy of Sciences of the United States of America 100: 253-258. doi: 10.1073/pnas.0135058100 PMID: 12506194
36. Stern ER, Fitzgerald KD, Welsh RC, Abelson JL, Taylor SF (2012) Resting-State Functional Connectivity between Fronto-Parietal and Default Mode Networks in Obsessive-Compulsive Disorder. PLoS ONE 7: e36356. doi: 10.1371/journal.pone.0036356 PMID: 22570705
37. Taylor KS, Seminowicz DA, Davis KD (2009) Two systems of resting state connectivity between the insula and cingulate cortex. Hum Brain Mapp 30: 2731-2745. doi: 10.1002/hbm.20705 PMID: 19072897
38. Astafiev SV, Shulman GL, Stanley CM, Snyder AZ, Van Essen DC, et al. (2003) Functional organization of human intraparietal and frontal cortex for attending, looking, and pointing. J Neurosci 23: 4689-4699. PMID: 12805308
39. Brier MR, Thomas JB, Snyder AZ, Benzinger TL, Zhang D, et al. (2012) Loss of intranetwork and internetwork resting state functional connections with Alzheimer's disease progression. J Neurosci 32: 8890-8899. doi: 10.1523/JNEUROSCI.5698-11.2012 PMID: 22745490
40. Forman SD, Cohen JD, Fitzgerald M, Eddy WF, Mintun MA, et al. (1995) Improved assessment of significant activation in functional magnetic resonance imaging (fMRI): Use of a cluster-size threshold. Magnetic Resonance in Medicine 33: 636-647. PMID: 7596267
41. Binney RJ, Embleton KV, Jefferies E, Parker GJM, Ralph MAL (2010) The ventral and inferolateral aspects of the anterior temporal lobe are crucial in semantic memory: evidence from a novel direct comparison of distortion-corrected fMRI, rTMS, and semantic dementia. Cereb Cortex 20: 2728-2738. doi: 10.1093/cercor/bhq019 PMID: 20190005
42. Miao X, Gu H, Yan L, Lu H, Wang DJJ, et al. (2014) Detecting resting-state brain activity by spontaneous cerebral blood volume fluctuations using whole brain vascular space occupancy imaging. Neuro- Image 84: 575-584. doi: 10.1016/j.neuroimage.2013.09.019 PMID: 24055705
43. Aguirre GK, Zarahn E, D'Esposito M (1998) The variability of human, BOLD hemodynamic responses. NeuroImage 8: 360-369. doi: 10.1006/nimg.1998.0369 PMID: 9811554
44. Birn RM, Saad ZS, Bandettini PA (2001) Spatial heterogeneity of the nonlinear dynamics in the FMRI BOLD response. NeuroImage 14: 817-826. doi: 10.1006/nimg.2001.0873 PMID: 11554800
45. Handwerker DA, Roopchansingh V, Gonzalez-Castillo J, Bandettini PA (2012) Periodic changes in fMRI connectivity. NeuroImage 63: 1712-1719. doi: 10.1016/j.neuroimage.2012.06.078 PMID: 22796990
46. Obata T, Liu TT, Miller KL, Luh WM, Wong EC, et al. (2004) Discrepancies between BOLD and flow dynamics in primary and supplementary motor areas: application of the balloon model to the interpretation of BOLD transients. NeuroImage 21: 144-153. PMID: 14741651
47. Handwerker DA, Gonzalez-Castillo J, D'Esposito M, Bandettini PA (2012) The continuing challenge of understanding and modeling hemodynamic variation in fMRI. NeuroImage 62: 1017-1023. doi: 10.1016/j.neuroimage.2012.02.015 PMID: 22366081
48. Bandettini PA, Wong EC (1995) Effects of biophysical and physiologic parameters on brain activation-induced R2∗ and R2 changes: simulations using a deterministic diffusion model. International Journal of Imaging Systems and Technology 6: 133-152.
49. Boxerman JL, Hamberg LM, Rosen BR, Weisskoff RM (1995) Mr contrast due to intravascular magnetic susceptibility perturbations. Magnetic Resonance in Medicine 34: 555-566. doi: 10.1002/mrm.1910340412 PMID: 8524024
50. Weisskoff RM, Zuo CS, Boxerman JL, Rosen BR (1994) Microscopic susceptibility variation and transverse relaxation: theory and experiment. Magn Reson Med 31: 601-610. PMID: 8057812
51. Aguirre GK, Detre JA, Zarahn E, Alsop DC (2002) Experimental design and the relative sensitivity of BOLD and perfusion fMRI. NeuroImage 15: 488-500. doi: 10.1006/nimg.2001.0990 PMID: 11848692
52. Tak S, Wang DJJ, Polimeni JR, Yan L, Chen JJ (2014) Dynamic and static contributions of the cerebrovasculature to the resting-state BOLD signal. NeuroImage: 1-9. doi: 10.1016/j.neuroimage.2013.09.057
53. Van Dijk KRA, Hedden T, Venkataraman A, Evans KC, Lazar SW, et al. (2010) Intrinsic Functional Connectivity As a Tool For Human Connectomics: Theory, Properties, and Optimization. Journal of Neurophysiology 103: 297-321. doi: 10.1152/jn.00783.2009 PMID: 19889849
54. Franco AR, Mannell MV, Calhoun VD, Mayer AR (2013) Impact of Analysis Methods on the Reproducibility and Reliability of Resting-State Networks. Brain Connectivity 3: 363-374. doi: 10.1089/brain.2012.0134 PMID: 23705789
55. Andrews-Hanna JR, Snyder AZ, Vincent JL, Lustig C, Head D, et al. (2007) Disruption of Large-Scale Brain Systems in Advanced Aging. Neuron 56: 924-935. doi: 10.1016/j.neuron.2007.10.038 PMID: 18054866
56. Honey CJ, Sporns O, Cammoun L, Gigandet X, Thiran JP, et al. (2009) Predicting human resting-state functional connectivity from structural connectivity. Proceedings of the National Academy of Sciences of the United States of America 106: 2035-2040. doi: 10.1073/pnas.0811168106 PMID: 19188601
57. Fornito A, Zalesky A, Breakspear M (2013) Graph analysis of the human connectome: Promise, progress, and pitfalls. NeuroImage 80: 426-444. doi: 10.1016/j.neuroimage.2013.04.087 PMID: 23643999
58. th Annual Meeting of the Society of Magnetic Resonance in Medicine: 169.
59. Pruessmann KP, Weiger M (1999) SENSE: sensitivity encoding for fast MRI. Magnetic Resonance in Medicine 42: 952-962. PMID: 10542355