메뉴 건너뛰기




Volumn 15, Issue 1, 2015, Pages

Eurasian house mouse (Mus musculus L.) differentiation at microsatellite loci identifies the Iranian plateau as a phylogeographic hotspot

Author keywords

House mouse; Iranian plateau; Microsatellites; Phylogeographic hotspot

Indexed keywords

ALLELE; GENETIC DIFFERENTIATION; GENETIC MARKER; IDENTIFICATION KEY; NEW RECORD; PHYLOGEOGRAPHY; RODENT; SUBSPECIES; TAXONOMY;

EID: 84923930946     PISSN: None     EISSN: 14712148     Source Type: Journal    
DOI: 10.1186/s12862-015-0306-4     Document Type: Article
Times cited : (54)

References (47)
  • 1
    • 1542563409 scopus 로고    scopus 로고
    • Initial sequencing and comparative analysis of the mouse genome
    • Mouse Genome Sequencing Consortium. Initial sequencing and comparative analysis of the mouse genome. Nature. 2002;420:520-62.
    • (2002) Nature , vol.420 , pp. 520-562
  • 2
    • 66249148986 scopus 로고    scopus 로고
    • Lineage-specific biology revealed by a finished genome assembly of the mouse
    • Church DM, Goodstadt L, Hillier LW, Zody MC, Goldstein S, She X, et al. Lineage-specific biology revealed by a finished genome assembly of the mouse. PLoS Biol. 2009;7(5):e1000112. doi:10.1371/journal.pbio.1000112.
    • (2009) PLoS Biol , vol.7 , Issue.5 , pp. e1000112
    • Church, D.M.1    Goodstadt, L.2    Hillier, L.W.3    Zody, M.C.4    Goldstein, S.5    She, X.6
  • 3
    • 84925657507 scopus 로고    scopus 로고
    • Tracing recent adaptations in natural populations of the house mouse
    • Macholán M, Baird SJE, Munclinger P, Piálek J, editors. Evolution of the House Mouse UK: Cambridge University Press
    • Teschke M, Buentge A, Tautz D. Tracing recent adaptations in natural populations of the house mouse. In: Macholán M, Baird SJE, Munclinger P, Piálek J, editors. Evolution of the House mouse (Cambridge Studies in Morphology and Molecules: New Paradigms in Evolutionary Biology). UK: Cambridge University Press; 2012. p. 315-33.
    • (2012) Cambridge Studies in Morphology and Molecules: New Paradigms in Evolutionary Biology , pp. 315-333
    • Teschke, M.1    Buentge, A.2    Tautz, D.3
  • 4
    • 0037213794 scopus 로고    scopus 로고
    • Wild mice: An ever-increasing contribution to a popular mammalian model
    • Guénet J-L, Bonhomme F. Wild mice: an ever-increasing contribution to a popular mammalian model. Trends Genet. 2003;19:24-31.
    • (2003) Trends Genet , vol.19 , pp. 24-31
    • Guénet, J.-L.1    Bonhomme, F.2
  • 5
    • 84925614150 scopus 로고    scopus 로고
    • House mouse phylogeography
    • Macholán M, Baird SJE, Munclinger P, Piálek J, editors. Evolution of the House Mouse UK: Cambridge University Press
    • Bonhomme F, Searle JB. House mouse phylogeography. In: Macholán M, Baird SJE, Munclinger P, Piálek J, editors. Evolution of the House mouse (Cambridge Studies in Morphology and Molecules: New Paradigms in Evolutionary Biology). UK: Cambridge University Press; 2012. p. 278-96.
    • (2012) Cambridge Studies in Morphology and Molecules: New Paradigms in Evolutionary Biology , pp. 278-296
    • Bonhomme, F.1    Searle, J.B.2
  • 7
    • 77958130571 scopus 로고    scopus 로고
    • House mouse colonization patterns on the sub-Antarctic Kerguelen Archipelago suggest singular primary invasions and resilience against re-invasion
    • Hardouin EA, Chapuis J-L, Stevens MI, Van Vuuren JB, Quillfeldt P, Scavetta RJ, et al. House mouse colonization patterns on the sub-Antarctic Kerguelen Archipelago suggest singular primary invasions and resilience against re-invasion. BMC Evol Biol. 2010;10:325.
    • (2010) BMC Evol Biol , vol.10 , pp. 325
    • Hardouin, E.A.1    Chapuis, J.-L.2    Stevens, M.I.3    Van Vuuren, J.B.4    Quillfeldt, P.5    Scavetta, R.J.6
  • 8
    • 83155191808 scopus 로고    scopus 로고
    • Of mice and 'convicts': Origin of the Australian house mouse. Mus musculus
    • Gabriel SI, Stevens MI, Da Luz MM, Searle JB. Of mice and 'convicts': origin of the Australian house mouse. Mus musculus. PLoS One. 2011;6(12):e28622. doi:10.1371/journal.pone.0028622.
    • (2011) PLoS One , vol.6 , Issue.12 , pp. e28622
    • Gabriel, S.I.1    Stevens, M.I.2    Da Luz, M.M.3    Searle, J.B.4
  • 10
    • 84925642966 scopus 로고    scopus 로고
    • Phylogeny and biogeography of the genus Mus in Eurasia
    • Macholán M, Baird SJE, Munclinger P, Piálek J, editors. Evolution of the House Mouse UK: Cambridge University Press
    • Suzuki H, Aplin KP. Phylogeny and biogeography of the genus Mus in Eurasia. In: Macholán M, Baird SJE, Munclinger P, Piálek J, editors. Evolution of the House mouse (Cambridge Studies in Morphology and Molecules: New Paradigms in Evolutionary Biology). UK: Cambridge University Press; 2012. p. 35-64.
    • (2012) Cambridge Studies in Morphology and Molecules: New Paradigms in Evolutionary Biology , pp. 35-64
    • Suzuki, H.1    Aplin, K.P.2
  • 11
    • 0031662638 scopus 로고    scopus 로고
    • Genetic variation and phylogeography of central Asian and other house mice, including a major new mitochondrial lineage in Yemen
    • Prager EM, Orrego C, Sage RD. Genetic variation and phylogeography of central Asian and other house mice, including a major new mitochondrial lineage in Yemen. Genetics. 1998;150:835-61.
    • (1998) Genetics , vol.150 , pp. 835-861
    • Prager, E.M.1    Orrego, C.2    Sage, R.D.3
  • 12
    • 84866319455 scopus 로고    scopus 로고
    • The south-eastern house mouse Mus musculus castaneus (Rodentia: Muridae) is a polytypic subspecies
    • Rajabi-Maham H, Orth A, Siahsarvie R, Boursot P, Darvish J, Bonhomme F. The south-eastern house mouse Mus musculus castaneus (Rodentia: Muridae) is a polytypic subspecies. Biol J Linn Soc. 2012;107:295-306.
    • (2012) Biol J Linn Soc , vol.107 , pp. 295-306
    • Rajabi-Maham, H.1    Orth, A.2    Siahsarvie, R.3    Boursot, P.4    Darvish, J.5    Bonhomme, F.6
  • 13
    • 84886101148 scopus 로고    scopus 로고
    • Evolutionary and dispersal history of Eurasian house mice Mus musculus clarified by more extensive geographic sampling of mitochondrial DNA
    • Suzuki H, Nunome M, Kinoshita G, Aplin KP, Vogel P, Kryukov AP, et al. Evolutionary and dispersal history of Eurasian house mice Mus musculus clarified by more extensive geographic sampling of mitochondrial DNA. Heredity. 2013;111(5):375-90.
    • (2013) Heredity , vol.111 , Issue.5 , pp. 375-390
    • Suzuki, H.1    Nunome, M.2    Kinoshita, G.3    Aplin, K.P.4    Vogel, P.5    Kryukov, A.P.6
  • 14
    • 84875069212 scopus 로고    scopus 로고
    • On the trail of Neolithic mice and men towards Transcaucasia: Zooarchaeological clues from Nakhchivan (Azerbaijan)
    • Cucchi T, Eszter Kovács Z, Berthon R, Orth A, Bonhomme F, Evin A, et al. On the trail of Neolithic mice and men towards Transcaucasia: zooarchaeological clues from Nakhchivan (Azerbaijan). Biol J Linn Soc. 2013;108:917-28.
    • (2013) Biol J Linn Soc , vol.108 , pp. 917-928
    • Cucchi, T.1    Eszter Kovács, Z.2    Berthon, R.3    Orth, A.4    Bonhomme, F.5    Evin, A.6
  • 15
    • 0035994597 scopus 로고    scopus 로고
    • Evidence for a mitochondrial lineage originating from the Arabian peninsula in the Madagascar House Mouse (Mus musculus)
    • Duplantier J-M, Orth A, Catalan J, Bonhomme F. Evidence for a mitochondrial lineage originating from the Arabian peninsula in the Madagascar House Mouse (Mus musculus). Heredity. 2002;89:154-8.
    • (2002) Heredity , vol.89 , pp. 154-158
    • Duplantier, J.-M.1    Orth, A.2    Catalan, J.3    Bonhomme, F.4
  • 16
    • 0036023028 scopus 로고    scopus 로고
    • Hybridation naturelle entre deux espèces sympatriques de souris M. musculus domesticus L. et M. spretus Lataste
    • Orth A, Belkhir K, Britton-Davidian J, Boursot P, Benazzou T, Bonhomme F. Hybridation naturelle entre deux espèces sympatriques de souris M. musculus domesticus L. et M. spretus Lataste. C R Biol. 2002;325:89-97.
    • (2002) C R Biol , vol.325 , pp. 89-97
    • Orth, A.1    Belkhir, K.2    Britton-Davidian, J.3    Boursot, P.4    Benazzou, T.5    Bonhomme, F.6
  • 17
    • 79958249603 scopus 로고    scopus 로고
    • Genetic differentiation of the house mouse around the Mediterranean basin: Matrilineal footprints of early and late colonization
    • Bonhomme F, Orth A, Cucchi T, Rajabi-Maham H, Catalan J, Boursot P, et al. Genetic differentiation of the house mouse around the Mediterranean basin: matrilineal footprints of early and late colonization. Proc R Soc B. 2011;278:1034-43.
    • (2011) Proc R Soc B , vol.278 , pp. 1034-1043
    • Bonhomme, F.1    Orth, A.2    Cucchi, T.3    Rajabi-Maham, H.4    Catalan, J.5    Boursot, P.6
  • 19
    • 33644926428 scopus 로고    scopus 로고
    • An analysis of signatures of selective sweeps in natural populations of the house mouse
    • Ihle S, Ravaoarimanana I, Thomas M, Tautz D. An analysis of signatures of selective sweeps in natural populations of the house mouse. Mol Biol Evol. 2006;23:790-7.
    • (2006) Mol Biol Evol , vol.23 , pp. 790-797
    • Ihle, S.1    Ravaoarimanana, I.2    Thomas, M.3    Tautz, D.4
  • 21
    • 38149012877 scopus 로고    scopus 로고
    • Phylogeography and postglacial expansion of Mus musculus domesticus inferred from mitochondrial DNA coalescent, from Iran to Europe
    • Rajabi-Maham H, Orth A, Bonhomme F. Phylogeography and postglacial expansion of Mus musculus domesticus inferred from mitochondrial DNA coalescent, from Iran to Europe. Mol Ecol. 2008;17:627-41.
    • (2008) Mol Ecol , vol.17 , pp. 627-641
    • Rajabi-Maham, H.1    Orth, A.2    Bonhomme, F.3
  • 22
    • 0037337784 scopus 로고    scopus 로고
    • Phylogenetic position and description of a new species of subgenus Mus (Rodentia, Mammalia) from Thailand
    • Auffray J-C, Orth A, Catalan J, Gonzalez J, Desmarais E, Bonhomme F. Phylogenetic position and description of a new species of subgenus Mus (Rodentia, Mammalia) from Thailand. Zool Scr. 2003;32:119-27.
    • (2003) Zool Scr , vol.32 , pp. 119-127
    • Auffray, J.-C.1    Orth, A.2    Catalan, J.3    Gonzalez, J.4    Desmarais, E.5    Bonhomme, F.6
  • 23
    • 33745841584 scopus 로고    scopus 로고
    • A new endemic species of the subgenus Mus (Rodentia, Mammalia) on the Island of Cyprus
    • Cucchi T, Orth A, Auffray J-C, Renaud S, Fabre L, Catalan J, et al. A new endemic species of the subgenus Mus (Rodentia, Mammalia) on the Island of Cyprus. Zootaxa. 2006;1241:1-36.
    • (2006) Zootaxa , vol.1241 , pp. 1-36
    • Cucchi, T.1    Orth, A.2    Auffray, J.-C.3    Renaud, S.4    Fabre, L.5    Catalan, J.6
  • 24
    • 59449088696 scopus 로고    scopus 로고
    • Identification of selective sweeps in closely related populations of the house mouse based on microsatellite scans
    • Teschke M, Mukabayire O, Wiehe T, Tautz D. Identification of selective sweeps in closely related populations of the house mouse based on microsatellite scans. Genetics. 2008;180:1537-45.
    • (2008) Genetics , vol.180 , pp. 1537-1545
    • Teschke, M.1    Mukabayire, O.2    Wiehe, T.3    Tautz, D.4
  • 26
    • 33846430499 scopus 로고    scopus 로고
    • Genetic transition in the house mouse, Mus musculus of Eastern Iranian Plateau
    • Darvish J, Orth A, Bonhomme F. Genetic transition in the house mouse, Mus musculus of Eastern Iranian Plateau. Folia Zool. 2006;55:349-57.
    • (2006) Folia Zool , vol.55 , pp. 349-357
    • Darvish, J.1    Orth, A.2    Bonhomme, F.3
  • 27
    • 0034118493 scopus 로고    scopus 로고
    • Inference of population structure using multilocus genotype data
    • Pritchard JK, Stephens M, Donnelly P. Inference of population structure using multilocus genotype data. Genetics. 2000;155:945-59.
    • (2000) Genetics , vol.155 , pp. 945-959
    • Pritchard, J.K.1    Stephens, M.2    Donnelly, P.3
  • 28
    • 21244479740 scopus 로고    scopus 로고
    • Detecting the number of clusters of individuals using the software STRUCTURE: A simulation study
    • Evanno G, Regnaut S, Goudet J. Detecting the number of clusters of individuals using the software STRUCTURE: a simulation study. Mol Ecol. 2005;14:2611-20.
    • (2005) Mol Ecol , vol.14 , pp. 2611-2620
    • Evanno, G.1    Regnaut, S.2    Goudet, J.3
  • 29
    • 79959616708 scopus 로고    scopus 로고
    • On Identifying the optimal number of population clusters via the deviance information criterion
    • Gao H, Bryc B, Bustamente CD. On Identifying the optimal number of population clusters via the deviance information criterion. PLoS One. 2011;6:e21014. doi:10.1371/journal.pone.0021014.
    • (2011) PLoS One , vol.6 , pp. e21014
    • Gao, H.1    Bryc, B.2    Bustamente, C.D.3
  • 30
    • 77953514529 scopus 로고    scopus 로고
    • Detection of recombinant haplotypes in wild mice (Mus musculus) provides new insights into the origin of Japanese mice
    • Nunome M, Ishimori C, Aplin KP, Tsuchiya K, Yonekawa H, Moriwaki K, et al. Detection of recombinant haplotypes in wild mice (Mus musculus) provides new insights into the origin of Japanese mice. Mol Ecol. 2010;19:2474-89.
    • (2010) Mol Ecol , vol.19 , pp. 2474-2489
    • Nunome, M.1    Ishimori, C.2    Aplin, K.P.3    Tsuchiya, K.4    Yonekawa, H.5    Moriwaki, K.6
  • 31
    • 0036218652 scopus 로고    scopus 로고
    • The complex history of a gene proposed to participate in a sexual isolation mechanism in house mice
    • Karn RC, Orth A, Bonhomme F, Boursot P. The complex history of a gene proposed to participate in a sexual isolation mechanism in house mice. Mol Biol Evol. 2002;19:462-71.
    • (2002) Mol Biol Evol , vol.19 , pp. 462-471
    • Karn, R.C.1    Orth, A.2    Bonhomme, F.3    Boursot, P.4
  • 32
    • 82955239986 scopus 로고    scopus 로고
    • Isolation and gene flow: Inferring the speciation history of European house mouse
    • Duvaux L, Belkhir K, Boulesteix M, Boursot P. Isolation and gene flow: inferring the speciation history of European house mouse. Mol Ecol. 2011;20:5248-64.
    • (2011) Mol Ecol , vol.20 , pp. 5248-5264
    • Duvaux, L.1    Belkhir, K.2    Boulesteix, M.3    Boursot, P.4
  • 33
    • 84856450974 scopus 로고    scopus 로고
    • Patterns of morphological evolution in the mandible of the house mouse Mus musculus (Rodentia: Muridae)
    • Siahsarvie R, Auffray J-C, Darvish J, Rajabi-Maham H, Yu HT, Agret S, et al. Patterns of morphological evolution in the mandible of the house mouse Mus musculus (Rodentia: Muridae). Biol J Linn Soc. 2012;105:635-47.
    • (2012) Biol J Linn Soc , vol.105 , pp. 635-647
    • Siahsarvie, R.1    Auffray, J.-C.2    Darvish, J.3    Rajabi-Maham, H.4    Yu, H.T.5    Agret, S.6
  • 34
    • 84866150090 scopus 로고    scopus 로고
    • Genome patterns of selection and introgression of haplotypes in natural populations of the house mouse (Mus musculus)
    • Staubach F, Lorenc A, Messer PW, Tang K, Petrov DA, Tautz D. Genome patterns of selection and introgression of haplotypes in natural populations of the house mouse (Mus musculus). PLoS Genet. 2012;8:e1002891. doi:10.1371/journal.pgen.1002891.
    • (2012) PLoS Genet , vol.8 , pp. e1002891
    • Staubach, F.1    Lorenc, A.2    Messer, P.W.3    Tang, K.4    Petrov, D.A.5    Tautz, D.6
  • 35
    • 84907997118 scopus 로고    scopus 로고
    • Genome-wide patterns of differentiation among house mouse subspecies
    • Phifer-Rixey M, Bomhoff M, Nachman M. Genome-wide patterns of differentiation among house mouse subspecies. Genetics. 2014;198:283-97.
    • (2014) Genetics , vol.198 , pp. 283-297
    • Phifer-Rixey, M.1    Bomhoff, M.2    Nachman, M.3
  • 36
    • 84925665102 scopus 로고    scopus 로고
    • What can the Mus musculus musculus/M. M. Domesticus hybrid zone tell us about speciation?
    • Macholán M, Baird SJE, Munclinger P, Piálek J, editors. Evolution of the House Mouse UK: Cambridge University Press
    • Baird SJE, Macholan M. What can the Mus musculus musculus/M. m. domesticus hybrid zone tell us about speciation? In: Macholán M, Baird SJE, Munclinger P, Piálek J, editors. Evolution of the House mouse (Cambridge Studies in Morphology and Molecules: New Paradigms in Evolutionary Biology). UK: Cambridge University Press; 2012. p. 334-72.
    • (2012) Cambridge Studies in Morphology and Molecules: New Paradigms in Evolutionary Biology , pp. 334-372
    • Baird, S.J.E.1    Macholan, M.2
  • 37
    • 34248189695 scopus 로고    scopus 로고
    • A pooling approach to detect signatures of selective sweeps in genome scans using microsatellites
    • Thomas M, Moeller F, Wiehe T, Tautz D. A pooling approach to detect signatures of selective sweeps in genome scans using microsatellites. Mol Ecol Notes. 2007;7:400-3.
    • (2007) Mol Ecol Notes , vol.7 , pp. 400-403
    • Thomas, M.1    Moeller, F.2    Wiehe, T.3    Tautz, D.4
  • 40
    • 77953032930 scopus 로고    scopus 로고
    • Arlequin suite ver 3.5: A new series of programs to perform population genetics analyses under Linux and Windows
    • Excoffier L, Lischer HEL. Arlequin suite ver 3.5: A new series of programs to perform population genetics analyses under Linux and Windows. Mol Ecol Resour. 2010;10:564-7.
    • (2010) Mol Ecol Resour , vol.10 , pp. 564-567
    • Excoffier, L.1    Lischer, H.E.L.2
  • 41
    • 0003437302 scopus 로고    scopus 로고
    • Distributed by the author. Seattle: Department of Genome Sciences, University of Washington
    • Felsenstein J. PHYLIP (Phylogeny Inference Package) version 3.6. Distributed by the author. Seattle: Department of Genome Sciences, University of Washington; 2005.
    • (2005) PHYLIP (Phylogeny Inference Package) Version 3.6
    • Felsenstein, J.1
  • 44
    • 84882759440 scopus 로고    scopus 로고
    • STRUCTURE HARVESTER: A website and program for visualizing STRUCTURE output and implementing the Evanno method
    • Earl DA, von Holdt BM. STRUCTURE HARVESTER: a website and program for visualizing STRUCTURE output and implementing the Evanno method. Conserv Genet Resour. 2012;4:359-61.
    • (2012) Conserv Genet Resour , vol.4 , pp. 359-361
    • Earl, D.A.1    Von Holdt, B.M.2
  • 45
    • 34547861256 scopus 로고    scopus 로고
    • CLUMPP: A cluster matching and permutation program for dealing with label switching and multimodality in analysis of population structure
    • Jakobsson M, Rosenberg NA. CLUMPP: a cluster matching and permutation program for dealing with label switching and multimodality in analysis of population structure. Bioinformatics. 2004;23:1801-6.
    • (2004) Bioinformatics , vol.23 , pp. 1801-1806
    • Jakobsson, M.1    Rosenberg, N.A.2
  • 46
    • 1342331102 scopus 로고    scopus 로고
    • Distruct: A program for the graphical display of population structure
    • Rosenberg NA. Distruct: a program for the graphical display of population structure. Mol Ecol Notes. 2004;4:137-8.
    • (2004) Mol Ecol Notes , vol.4 , pp. 137-138
    • Rosenberg, N.A.1
  • 47
    • 0027157960 scopus 로고
    • Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees
    • Tamura K, Nei M. Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees. Mol Biol Evol. 1993;10:512-26.
    • (1993) Mol Biol Evol , vol.10 , pp. 512-526
    • Tamura, K.1    Nei, M.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.