-
1
-
-
33745256005
-
Approximate likelihood-ratio test for branches: a fast, accurate, and powerful alternative
-
Anisimova M, Gascuel O. 2006. Approximate likelihood-ratio test for branches: a fast, accurate, and powerful alternative. Systematic Biology 55: 539-552.
-
(2006)
Systematic Biology
, vol.55
, pp. 539-552
-
-
Anisimova, M.1
Gascuel, O.2
-
2
-
-
34249093040
-
Reduced X-linked diversity in derived populations of house mice
-
Baines JF, Harr B. 2007. Reduced X-linked diversity in derived populations of house mice. Genetics 175: 1911-1921.
-
(2007)
Genetics
, vol.175
, pp. 1911-1921
-
-
Baines, J.F.1
Harr, B.2
-
3
-
-
10744232965
-
Revisiting the mouse mitochondrial DNA sequence
-
Bayona-Bafaluy MP, Acin-Perez R, Mullikin JC, Park JS, Moreno-Loshuertos R, Hu P, Perez-Martos A, Fernandez-Silva P, Bai Y, Enriquez JA. 2003. Revisiting the mouse mitochondrial DNA sequence. Nucleic Acids Research 31: 5349-5355.
-
(2003)
Nucleic Acids Research
, vol.31
, pp. 5349-5355
-
-
Bayona-Bafaluy, M.P.1
Acin-Perez, R.2
Mullikin, J.C.3
Park, J.S.4
Moreno-Loshuertos, R.5
Hu, P.6
Perez-Martos, A.7
Fernandez-Silva, P.8
Bai, Y.9
Enriquez, J.A.10
-
4
-
-
0030759288
-
Discordant phylogeographic patterns between the Y chromosome and mitochondrial DNA in the house mouse: selection on the Y chromosome?
-
Boissinot S, Boursot P. 1997. Discordant phylogeographic patterns between the Y chromosome and mitochondrial DNA in the house mouse: selection on the Y chromosome? Genetics 146: 1019-1034.
-
(1997)
Genetics
, vol.146
, pp. 1019-1034
-
-
Boissinot, S.1
Boursot, P.2
-
5
-
-
79958249603
-
Genetic differentiation of the house mouse around the Mediterranean basin: matrilineal footprints of early and late colonization
-
Bonhomme F, Orth A, Cucchi T, Rajabi-Maham H, Catalan J, Boursot P, Auffray JC, Britton-Davidian J. 2011. Genetic differentiation of the house mouse around the Mediterranean basin: matrilineal footprints of early and late colonization. Proceedings of the Royal Society B-Biological Sciences 278: 1034-1043.
-
(2011)
Proceedings of the Royal Society B-Biological Sciences
, vol.278
, pp. 1034-1043
-
-
Bonhomme, F.1
Orth, A.2
Cucchi, T.3
Rajabi-Maham, H.4
Catalan, J.5
Boursot, P.6
Auffray, J.C.7
Britton-Davidian, J.8
-
6
-
-
34548309601
-
Species-wide distribution of highly polymorphic minisatellite markers suggests past and present genetic exchanges among House Mouse subspecies
-
Bonhomme F, Rivals E, Orth A, Grant GR, Jeffreys AJ, Bois PR. 2007. Species-wide distribution of highly polymorphic minisatellite markers suggests past and present genetic exchanges among House Mouse subspecies. Genome Biology 8: R80.
-
(2007)
Genome Biology
, vol.8
-
-
Bonhomme, F.1
Rivals, E.2
Orth, A.3
Grant, G.R.4
Jeffreys, A.J.5
Bois, P.R.6
-
7
-
-
84870930452
-
House mouse phylogeography
-
Baird SJE, Macholán M, Munclinger P, Piálek J, eds. New York, NY: Cambridge University Press. (in press).
-
Bonhomme F, Searle JB. 2012. House mouse phylogeography. In: Baird SJE, Macholán M, Munclinger P, Piálek J, eds. Evolution of the house mouse. Cambridge studies in morphology and molecules: new paradigms in evolutionary biology macholan. New York, NY: Cambridge University Press. (in press).
-
(2012)
Evolution of the house mouse. Cambridge studies in morphology and molecules: new paradigms in evolutionary biology macholan
-
-
Bonhomme, F.1
Searle, J.B.2
-
9
-
-
0029659472
-
Origin and radiation of the house mouse : mitochondrial DNA phylogeny
-
Boursot P, Din W, Anand R, Darviche D, Dod B, Von Deimling F, Talwar G, Bonhomme F. 1996. Origin and radiation of the house mouse : mitochondrial DNA phylogeny. Journal of Evolutionary Biology 9: 391-415.
-
(1996)
Journal of Evolutionary Biology
, vol.9
, pp. 391-415
-
-
Boursot, P.1
Din, W.2
Anand, R.3
Darviche, D.4
Dod, B.5
Von Deimling, F.6
Talwar, G.7
Bonhomme, F.8
-
10
-
-
84863115856
-
The genome architecture of the collaborative cross mouse genetic reference population
-
Collaborative Cross Consortium.
-
Collaborative Cross Consortium. 2012. The genome architecture of the collaborative cross mouse genetic reference population. Genetics 190: 389-401.
-
(2012)
Genetics
, vol.190
, pp. 389-401
-
-
-
11
-
-
84856433740
-
Biosystematic approach to geographic variations of house mouse group, Mus musculus L. 1766
-
Darvish J. 2008. Biosystematic approach to geographic variations of house mouse group, Mus musculus L. 1766. Iranian Journal of Animal Biosystematics 4: 31-58.
-
(2008)
Iranian Journal of Animal Biosystematics
, vol.4
, pp. 31-58
-
-
Darvish, J.1
-
12
-
-
33846430499
-
Genetic transition in the House Mouse Mus musculus of Eastern Iranian Plateau
-
Darvish J, Orth A, Bonhomme F. 2006. Genetic transition in the House Mouse Mus musculus of Eastern Iranian Plateau. Folia Zoologica 55: 349-357.
-
(2006)
Folia Zoologica
, vol.55
, pp. 349-357
-
-
Darvish, J.1
Orth, A.2
Bonhomme, F.3
-
13
-
-
10344227671
-
Origin and radiation of the house mouse : clues from nuclear genes
-
Din W, Anand R, Boursot P, Darviche D, Dod B, Jouvin-Marche E, Orth A, Talwar G, Cazenave P-A, Bonhomme F. 1996. Origin and radiation of the house mouse : clues from nuclear genes. Journal of Evolutionary Biology 9: 519-539.
-
(1996)
Journal of Evolutionary Biology
, vol.9
, pp. 519-539
-
-
Din, W.1
Anand, R.2
Boursot, P.3
Darviche, D.4
Dod, B.5
Jouvin-Marche, E.6
Orth, A.7
Talwar, G.8
Cazenave, P.-A.9
Bonhomme, F.10
-
14
-
-
67349235287
-
A late Holocene pollen record from Lake Almalou in NW Iran : evidence for changing land-use in relation to some historical events during the last 3700 years
-
Djamali M, de Beaulieu J-L, Miller N, Andrieu-Ponel V, Berberian M, Gandouin E, Lahijani H, Ponel P, Salimian M, Guiter F. 2009. A late Holocene pollen record from Lake Almalou in NW Iran : evidence for changing land-use in relation to some historical events during the last 3700 years. Journal of Archaeological Science 36: 1346-1375.
-
(2009)
Journal of Archaeological Science
, vol.36
, pp. 1346-1375
-
-
Djamali, M.1
de Beaulieu, J.-L.2
Miller, N.3
Andrieu-Ponel, V.4
Berberian, M.5
Gandouin, E.6
Lahijani, H.7
Ponel, P.8
Salimian, M.9
Guiter, F.10
-
15
-
-
82955239986
-
Isolation and gene flow: inferring the speciation history of European house mice
-
Duvaux L, Belkhir K, Boulesteix M, Boursot P. 2011. Isolation and gene flow: inferring the speciation history of European house mice. Molecular Ecology 20: 5248-5264.
-
(2011)
Molecular Ecology
, vol.20
, pp. 5248-5264
-
-
Duvaux, L.1
Belkhir, K.2
Boulesteix, M.3
Boursot, P.4
-
16
-
-
85007110786
-
Arlequin ver. 3.0: an integrated software package for population genetics data analysis
-
Excoffier L, Laval G, Schneider S. 2005. Arlequin ver. 3.0: an integrated software package for population genetics data analysis. Evolutionary Bioinformatics Online 1: 47-50.
-
(2005)
Evolutionary Bioinformatics Online
, vol.1
, pp. 47-50
-
-
Excoffier, L.1
Laval, G.2
Schneider, S.3
-
17
-
-
57349140938
-
Inferring the history of speciation in house mice from autosomal, X-linked, Y-linked and mitochondrial genes
-
Geraldes A, Basset P, Gibson B, Smith KL, Harr B, Yu HT, Bulatova N, Ziv Y, Nachman MW. 2008. Inferring the history of speciation in house mice from autosomal, X-linked, Y-linked and mitochondrial genes. Molecular Ecology 17: 5349-5363.
-
(2008)
Molecular Ecology
, vol.17
, pp. 5349-5363
-
-
Geraldes, A.1
Basset, P.2
Gibson, B.3
Smith, K.L.4
Harr, B.5
Yu, H.T.6
Bulatova, N.7
Ziv, Y.8
Nachman, M.W.9
-
18
-
-
33847694330
-
mtDNA phylogeny and evolution of laboratory mouse strains
-
Goios A, Pereira L, Bogue M, Macaulay V, Amorim A. 2007. mtDNA phylogeny and evolution of laboratory mouse strains. Genome Research 17: 293-298.
-
(2007)
Genome Research
, vol.17
, pp. 293-298
-
-
Goios, A.1
Pereira, L.2
Bogue, M.3
Macaulay, V.4
Amorim, A.5
-
19
-
-
0037213794
-
Wild mice: an ever-increasing contribution to a popular mammalian model
-
Guénet JL, Bonhomme F. 2003. Wild mice: an ever-increasing contribution to a popular mammalian model. Trends in Genetics 19: 24-31.
-
(2003)
Trends in Genetics
, vol.19
, pp. 24-31
-
-
Guénet, J.L.1
Bonhomme, F.2
-
20
-
-
0242578620
-
A simple, fast and accurate algorithm to estimate large phylogenies by maximum likelihood
-
Guindon S, Gascuel O. 2003. A simple, fast and accurate algorithm to estimate large phylogenies by maximum likelihood. Systematic Biology 52: 696-704.
-
(2003)
Systematic Biology
, vol.52
, pp. 696-704
-
-
Guindon, S.1
Gascuel, O.2
-
21
-
-
0342368611
-
Mitochondrial DNA and chromosomal studies of wild mice (Mus) from Turkey and Iran
-
Gündüz I, Tez C, Malikov V, Vaziri A, Polyakov AV, Searle JB. 2000. Mitochondrial DNA and chromosomal studies of wild mice (Mus) from Turkey and Iran. Heredity 84: 458-467.
-
(2000)
Heredity
, vol.84
, pp. 458-467
-
-
Gündüz, I.1
Tez, C.2
Malikov, V.3
Vaziri, A.4
Polyakov, A.V.5
Searle, J.B.6
-
22
-
-
0002051540
-
BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT
-
Hall TA. 1999. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symposium Series. 41: 95-98.
-
(1999)
Nucleic Acids Symposium Series.
, vol.41
, pp. 95-98
-
-
Hall, T.A.1
-
23
-
-
76749105263
-
Evidence for pervasive adaptive protein evolution in wild mice
-
Halligan DL, Oliver F, Eyre-Walker A, Harr B, Keightley PD. 2010. Evidence for pervasive adaptive protein evolution in wild mice. PLoS Genetics 6: e1000825.
-
(2010)
PLoS Genetics
, vol.6
-
-
Halligan, D.L.1
Oliver, F.2
Eyre-Walker, A.3
Harr, B.4
Keightley, P.D.5
-
25
-
-
79952591340
-
The expansion of the house mouse into north-western Europe
-
Jones EP, Jóhannesdóttir F, Gündüz İ, Richards MB, Searle JB. 2011. The expansion of the house mouse into north-western Europe. Journal of Zoology 283: 257-268.
-
(2011)
Journal of Zoology
, vol.283
, pp. 257-268
-
-
Jones, E.P.1
Jóhannesdóttir, F.2
Gündüz, I.3
Richards, M.B.4
Searle, J.B.5
-
26
-
-
13744252890
-
MAFFT version 5: improvement in accuracy of multiple sequence alignment
-
Katoh K, Kuma K, Toh H, Miyata T. 2005. MAFFT version 5: improvement in accuracy of multiple sequence alignment. Nucleic Acids Research 33: 511-518.
-
(2005)
Nucleic Acids Research
, vol.33
, pp. 511-518
-
-
Katoh, K.1
Kuma, K.2
Toh, H.3
Miyata, T.4
-
27
-
-
0022437996
-
Systematics of the genus mus
-
Potter M, Nadeau JH, Cancro MP, eds. New York: Springer.
-
Marshall JT. 1986. Systematics of the genus mus. In: Potter M, Nadeau JH, Cancro MP, eds. 12-18. The wild mouse in immunology. New York: Springer.
-
(1986)
The wild mouse in immunology
, pp. 12-18
-
-
Marshall, J.T.1
-
28
-
-
63049112416
-
The erratic mitochondrial clock: variations of mutation rate, not population size, affect mtDNA diversity across birds and mammals
-
doi: 10.1186/1471-2148-9-54
-
Nabholz B, Glemin S, Galtier N. 2009. The erratic mitochondrial clock: variations of mutation rate, not population size, affect mtDNA diversity across birds and mammals. BMC Evolutionnary Biology 9: 54. doi: 10.1186/1471-2148-9-54
-
(2009)
BMC Evolutionnary Biology
, vol.9
, pp. 54
-
-
Nabholz, B.1
Glemin, S.2
Galtier, N.3
-
29
-
-
77953514529
-
Detection of recombinant haplotypes in wild mice (Mus musculus) provides new insights into the origin of Japanese mice
-
Nunome M, Ishimori C, Aplin KP, Tsuchiya K, Yonekawa H, Moriwaki K, Suzuki H. 2010. Detection of recombinant haplotypes in wild mice (Mus musculus) provides new insights into the origin of Japanese mice. Molecular Ecology 19: 2474-2489.
-
(2010)
Molecular Ecology
, vol.19
, pp. 2474-2489
-
-
Nunome, M.1
Ishimori, C.2
Aplin, K.P.3
Tsuchiya, K.4
Yonekawa, H.5
Moriwaki, K.6
Suzuki, H.7
-
30
-
-
84866328214
-
Adaptive evolution and effective population size in wild house mice
-
online April 3, 2012 doi:10.1093/molbev/mss105.
-
Phifer-Rixey M, Bonhomme F, Boursot P, Churchill GA, Piálek J, Tucker PK, Nachman MW. 2012. Adaptive evolution and effective population size in wild house mice. Molecular Biology & Evolution. online April 3, 2012 doi:10.1093/molbev/mss105.
-
(2012)
Molecular Biology & Evolution
-
-
Phifer-Rixey, M.1
Bonhomme, F.2
Boursot, P.3
Churchill, G.A.4
Piálek, J.5
Tucker, P.K.6
Nachman, M.W.7
-
31
-
-
0031109519
-
New assays for Y chromosome and p53 pseudogene clines among East Holstein house mice
-
Prager E, Boursot P, Sage R. 1997. New assays for Y chromosome and p53 pseudogene clines among East Holstein house mice. Mammalian Genome 8: 279-281.
-
(1997)
Mammalian Genome
, vol.8
, pp. 279-281
-
-
Prager, E.1
Boursot, P.2
Sage, R.3
-
32
-
-
0031662638
-
Genetic variation and phylogeography of central Asian and other house mice, including a major new mitochondrial lineage in Yemen
-
Prager EM, Orrego C, Sage RD. 1998. Genetic variation and phylogeography of central Asian and other house mice, including a major new mitochondrial lineage in Yemen. Genetics 150: 835-861.
-
(1998)
Genetics
, vol.150
, pp. 835-861
-
-
Prager, E.M.1
Orrego, C.2
Sage, R.D.3
-
33
-
-
0029666034
-
Mitochondrial DNA sequence variation in the eastern house mouse, Mus musculus: comparison with other house mice and report of a 75-bp tandem repeat
-
Prager EM, Tichy H, Sage RD. 1996. Mitochondrial DNA sequence variation in the eastern house mouse, Mus musculus: comparison with other house mice and report of a 75-bp tandem repeat. Genetics 143: 427-446.
-
(1996)
Genetics
, vol.143
, pp. 427-446
-
-
Prager, E.M.1
Tichy, H.2
Sage, R.D.3
-
34
-
-
84877109603
-
-
R Development Core Team. R: a language and environment for statistical computing. Available at:.
-
R Development Core Team. 2011. R: a language and environment for statistical computing. Available at: http://www.R-project.org.
-
(2011)
-
-
-
35
-
-
38149012877
-
Phylogeography and postglacial expansion of Mus musculus domesticus inferred from mitochondrial DNA coalescent, from Iran to Europe
-
Rajabi-Maham H, Orth A, Bonhomme F. 2008. Phylogeography and postglacial expansion of Mus musculus domesticus inferred from mitochondrial DNA coalescent, from Iran to Europe. Molecular Ecology 17: 627-641.
-
(2008)
Molecular Ecology
, vol.17
, pp. 627-641
-
-
Rajabi-Maham, H.1
Orth, A.2
Bonhomme, F.3
-
36
-
-
58149234151
-
The diverse origins of New Zealand house mice
-
Searle JB, Jamieson PM, Gündüz I, Stevens MI, Jones EP, Gemmill CE, King CM. 2009b. The diverse origins of New Zealand house mice. Proceedings of the Royal Society B-Biological Sciences 276: 209-217.
-
(2009)
Proceedings of the Royal Society B-Biological Sciences
, vol.276
, pp. 209-217
-
-
Searle, J.B.1
Jamieson, P.M.2
Gündüz, I.3
Stevens, M.I.4
Jones, E.P.5
Gemmill, C.E.6
King, C.M.7
-
37
-
-
58149260341
-
Of mice and (Viking?) men: phylogeography of British and Irish house mice
-
Searle JB, Jones CS, Gündüz I, Scascitelli M, Jones EP, Herman JS, Rambau RV, Noble LR, Berry RJ, Gimenez MD, Johannesdottir F. 2009a. Of mice and (Viking?) men: phylogeography of British and Irish house mice. Proceedings of the Royal Society B-Biological Sciences 276: 201-207.
-
(2009)
Proceedings of the Royal Society B-Biological Sciences
, vol.276
, pp. 201-207
-
-
Searle, J.B.1
Jones, C.S.2
Gündüz, I.3
Scascitelli, M.4
Jones, E.P.5
Herman, J.S.6
Rambau, R.V.7
Noble, L.R.8
Berry, R.J.9
Gimenez, M.D.10
Johannesdottir, F.11
-
38
-
-
84866312733
-
Contemporary and sub-fossil house mice (Mus musculus Linnaeus, 1758) (Rodentia:Muridae) from Iran
-
Shabani M, Darvish J, Mashkour M, Ghasemzadeh F, Mirshamsi O. 2010. Contemporary and sub-fossil house mice (Mus musculus Linnaeus, 1758) (Rodentia:Muridae) from Iran. Iranian Journal of Animal Biosystematics 6: 45-54.
-
(2010)
Iranian Journal of Animal Biosystematics
, vol.6
, pp. 45-54
-
-
Shabani, M.1
Darvish, J.2
Mashkour, M.3
Ghasemzadeh, F.4
Mirshamsi, O.5
-
39
-
-
84856450974
-
Patterns of morphological evolution in the mandible of the house mouse Mus musculus (Rodentia: Muridae)
-
Siahsarvie R, Auffray J-C, Darvish J, Rajabi-Maham H, Yu H-T, Agret S, Bonhomme F, Claude J. 2012. Patterns of morphological evolution in the mandible of the house mouse Mus musculus (Rodentia: Muridae). Biological Journal of the Linnean Society 105: 635-647.
-
(2012)
Biological Journal of the Linnean Society
, vol.105
, pp. 635-647
-
-
Siahsarvie, R.1
Auffray, J.-C.2
Darvish, J.3
Rajabi-Maham, H.4
Yu, H.-T.5
Agret, S.6
Bonhomme, F.7
Claude, J.8
-
40
-
-
79957613599
-
MEGA5: molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods
-
Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S. 2011. MEGA5: molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods. Molecular Biology and Evolution 28: 2731-2739.
-
(2011)
Molecular Biology and Evolution
, vol.28
, pp. 2731-2739
-
-
Tamura, K.1
Peterson, D.2
Peterson, N.3
Stecher, G.4
Nei, M.5
Kumar, S.6
-
41
-
-
31544449148
-
Phylogeographic origin of Hokkaido house mice (Mus musculus) as indicated by genetic markers with maternal, paternal and biparental inheritance
-
Terashima M, Furusawa S, Hanzawa N, Tsuchiya K, Suyanto A, Moriwaki K, Yonekawa H, Suzuki H. 2006. Phylogeographic origin of Hokkaido house mice (Mus musculus) as indicated by genetic markers with maternal, paternal and biparental inheritance. Heredity 96: 128-138.
-
(2006)
Heredity
, vol.96
, pp. 128-138
-
-
Terashima, M.1
Furusawa, S.2
Hanzawa, N.3
Tsuchiya, K.4
Suyanto, A.5
Moriwaki, K.6
Yonekawa, H.7
Suzuki, H.8
-
42
-
-
33845985967
-
Contrasting evolution of expression differences in the testis between species and subspecies of the house mouse
-
Voolstra C, Tautz D, Farbrother P, Eichinger L, Harr B. 2007. Contrasting evolution of expression differences in the testis between species and subspecies of the house mouse. Genome Research 17: 42-49.
-
(2007)
Genome Research
, vol.17
, pp. 42-49
-
-
Voolstra, C.1
Tautz, D.2
Farbrother, P.3
Eichinger, L.4
Harr, B.5
-
43
-
-
79959735506
-
Subspecific origin and haplotype diversity in the laboratory mouse
-
Yang H, Wang JR, Didion JP, Buus RJ, Bell TA, Welsh CE, Bonhomme F, Yu AH, Nachman MW, Pialek J, Tucker P, Boursot P, McMillan L, Churchill GA, de Villena FP. 2011. Subspecific origin and haplotype diversity in the laboratory mouse. Nature Genetics 43: 648-655.
-
(2011)
Nature Genetics
, vol.43
, pp. 648-655
-
-
Yang, H.1
Wang, J.R.2
Didion, J.P.3
Buus, R.J.4
Bell, T.A.5
Welsh, C.E.6
Bonhomme, F.7
Yu, A.H.8
Nachman, M.W.9
Pialek, J.10
Tucker, P.11
Boursot, P.12
McMillan, L.13
de Churchill, G.A.14
Villena, F.P.15
-
44
-
-
84877117978
-
Origin and genetic status of Mus musculus molossinus: a typical example for reticulate evolution in the genus mus
-
Baird SJE, Macholán M, Munclinger P, Piálek J, eds. New York, NY: Cambridge University Press.
-
Yonekawa H, Sato JJ, Suzuki H, Moriwaki K. 2012. Origin and genetic status of Mus musculus molossinus: a typical example for reticulate evolution in the genus mus. In: Baird SJE, Macholán M, Munclinger P, Piálek J, eds. Evolution of the house mouse. Cambridge studies in morphology and molecules: new paradigms in evolutionary biology macholan. New York, NY: Cambridge University Press.
-
(2012)
Evolution of the house mouse. Cambridge studies in morphology and molecules: new paradigms in evolutionary biology macholan
-
-
Yonekawa, H.1
Sato, J.J.2
Suzuki, H.3
Moriwaki, K.4
|