-
1
-
-
0034055985
-
Function and Mechanism of Zinc Metalloenzymes
-
McCall KA, Huang CC, Fierke CA. Function and Mechanism of Zinc Metalloenzymes. J Nutr. 2000;130(5):1437S-46.
-
(2000)
J Nutr.
, vol.130
, Issue.5
, pp. 1437S-46
-
-
McCall, K.A.1
Huang, C.C.2
Fierke, C.A.3
-
3
-
-
81755162996
-
A molecular mechanism for bacterial susceptibility to zinc
-
McDevitt CA, Ogunniyi AD, Valkov E, Lawrence MC, Kobe B, McEwan AG, et al. A molecular mechanism for bacterial susceptibility to zinc. PLoS Pathog. 2011;7(11):e1002357.
-
(2011)
PLoS Pathog.
, vol.7
, Issue.11
, pp. e1002357
-
-
McDevitt, C.A.1
Ogunniyi, A.D.2
Valkov, E.3
Lawrence, M.C.4
Kobe, B.5
McEwan, A.G.6
-
4
-
-
0038579426
-
Zn(II) metabolism in prokaryotes
-
Blencowe DK, Morby AP. Zn(II) metabolism in prokaryotes. FEMS Microbiol Rev. 2003;27(2-3):291-311.
-
(2003)
FEMS Microbiol Rev.
, vol.27
, Issue.2-3
, pp. 291-311
-
-
Blencowe, D.K.1
Morby, A.P.2
-
5
-
-
15744390704
-
Genetic and physiological responses of Bacillus subtilis to metal ion stress
-
Moore CM, Gaballa A, Hui M, Ye RW, Helmann JD. Genetic and physiological responses of Bacillus subtilis to metal ion stress. Mol Microbiol. 2005;57(1):27-40.
-
(2005)
Mol Microbiol.
, vol.57
, Issue.1
, pp. 27-40
-
-
Moore, C.M.1
Gaballa, A.2
Hui, M.3
Ye, R.W.4
Helmann, J.D.5
-
6
-
-
0031798662
-
The ZnuABC high-affinity zinc uptake system and its regulator Zur in Escherichia coli
-
Patzer SI, Hantke K. The ZnuABC high-affinity zinc uptake system and its regulator Zur in Escherichia coli. Mol Microbiol. 1998;28(6):1199-210.
-
(1998)
Mol Microbiol.
, vol.28
, Issue.6
, pp. 1199-1210
-
-
Patzer, S.I.1
Hantke, K.2
-
7
-
-
0031733646
-
Identification of a zinc-specific metalloregulatory protein, Zur, controlling zinc transport operons in Bacillus subtilis
-
Gaballa A, Helmann JD. Identification of a zinc-specific metalloregulatory protein, Zur, controlling zinc transport operons in Bacillus subtilis. J Bacteriol. 1998;180(22):5815-21.
-
(1998)
J Bacteriol.
, vol.180
, Issue.22
, pp. 5815-5821
-
-
Gaballa, A.1
Helmann, J.D.2
-
8
-
-
0035807029
-
Characterization of the metal receptor sites in Escherichia coli Zur, an ultrasensitive zinc(II) metalloregulatory protein
-
Outten CE, Tobin DA, Penner-Hahn JE, O'Halloran TV. Characterization of the metal receptor sites in Escherichia coli Zur, an ultrasensitive zinc(II) metalloregulatory protein. Biochemistry. 2001;40(35):10417-23.
-
(2001)
Biochemistry.
, vol.40
, Issue.35
, pp. 10417-10423
-
-
Outten, C.E.1
Tobin, D.A.2
Penner-Hahn, J.E.3
O'Halloran, T.V.4
-
9
-
-
34248669001
-
Functional specialization within the Fur family of metalloregulators
-
Epub 2007 Jan2010
-
Lee JW, Helmann JD. Functional specialization within the Fur family of metalloregulators. Biometals. 2007;20(3-4):485-99. Epub 2007 Jan 2010.
-
(2007)
Biometals
, vol.20
, Issue.3-4
, pp. 485-499
-
-
Lee, J.W.1
Helmann, J.D.2
-
10
-
-
0036889461
-
Functional analysis of the Bacillus subtilis Zur regulon
-
Gaballa A, Wang T, Ye RW, Helmann JD. Functional analysis of the Bacillus subtilis Zur regulon. J Bacteriol. 2002;184(23):6508-14.
-
(2002)
J Bacteriol.
, vol.184
, Issue.23
, pp. 6508-6514
-
-
Gaballa, A.1
Wang, T.2
Ye, R.W.3
Helmann, J.D.4
-
11
-
-
47049087429
-
Regulation of the Bacillus subtilis yciC gene and insights into the DNA-binding specificity of the zinc-sensing metalloregulator Zur
-
Gabriel SE, Miyagi F, Gaballa A, Helmann JD. Regulation of the Bacillus subtilis yciC gene and insights into the DNA-binding specificity of the zinc-sensing metalloregulator Zur. J Bacteriol. 2008;190(10):3482-8.
-
(2008)
J Bacteriol.
, vol.190
, Issue.10
, pp. 3482-3488
-
-
Gabriel, S.E.1
Miyagi, F.2
Gaballa, A.3
Helmann, J.D.4
-
12
-
-
82255181596
-
Sequential binding and sensing of Zn(II) by Bacillus subtilis Zur
-
Ma Z, Gabriel SE, Helmann JD. Sequential binding and sensing of Zn(II) by Bacillus subtilis Zur. Nucleic Acids Res. 2011;39(21):9130-8.
-
(2011)
Nucleic Acids Res.
, vol.39
, Issue.21
, pp. 9130-9138
-
-
Ma, Z.1
Gabriel, S.E.2
Helmann, J.D.3
-
13
-
-
70350449245
-
Zinc-independent folate biosynthesis: Genetic, biochemical, and structural investigations reveal new metal dependence for GTP cyclohydrolase IB
-
Sankaran B, Bonnett SA, Shah K, Gabriel S, Reddy R, Schimmel P, et al. Zinc-independent folate biosynthesis: genetic, biochemical, and structural investigations reveal new metal dependence for GTP cyclohydrolase IB. J Bacteriol. 2009;191(22):6936-49.
-
(2009)
J Bacteriol.
, vol.191
, Issue.22
, pp. 6936-6949
-
-
Sankaran, B.1
Bonnett, S.A.2
Shah, K.3
Gabriel, S.4
Reddy, R.5
Schimmel, P.6
-
14
-
-
11144356954
-
Zinc is a key factor in controlling alternation of two types of L31 protein in the Bacillus subtilis ribosome
-
Nanamiya H, Akanuma G, Natori Y, Murayama R, Kosono S, Kudo T, et al. Zinc is a key factor in controlling alternation of two types of L31 protein in the Bacillus subtilis ribosome. Mol Microbiol. 2004;52(1):273-83.
-
(2004)
Mol Microbiol.
, vol.52
, Issue.1
, pp. 273-283
-
-
Nanamiya, H.1
Akanuma, G.2
Natori, Y.3
Murayama, R.4
Kosono, S.5
Kudo, T.6
-
15
-
-
33645242873
-
Liberation of zinc-containing L31 (RpmE) from ribosomes by its paralogous gene product, YtiA, in Bacillus subtilis
-
Akanuma G, Nanamiya H, Natori Y, Nomura N, Kawamura F. Liberation of zinc-containing L31 (RpmE) from ribosomes by its paralogous gene product, YtiA, in Bacillus subtilis. J Bacteriol. 2006;188(7):2715-20.
-
(2006)
J Bacteriol.
, vol.188
, Issue.7
, pp. 2715-2720
-
-
Akanuma, G.1
Nanamiya, H.2
Natori, Y.3
Nomura, N.4
Kawamura, F.5
-
16
-
-
77950125923
-
Towards an elucidation of the roles of the ribosome during different growth phases in Bacillus subtilis
-
Nanamiya H, Kawamura F. Towards an elucidation of the roles of the ribosome during different growth phases in Bacillus subtilis. Biosci Biotechnol Biochem. 2010;74(3):451-61.
-
(2010)
Biosci Biotechnol Biochem.
, vol.74
, Issue.3
, pp. 451-461
-
-
Nanamiya, H.1
Kawamura, F.2
-
17
-
-
70349125919
-
Contributions of Zur-controlled ribosomal proteins to growth under zinc starvation conditions
-
Gabriel SE, Helmann JD. Contributions of Zur-controlled ribosomal proteins to growth under zinc starvation conditions. J Bacteriol. 2009;191(19):6116-22.
-
(2009)
J Bacteriol.
, vol.191
, Issue.19
, pp. 6116-6122
-
-
Gabriel, S.E.1
Helmann, J.D.2
-
18
-
-
33845703824
-
A fail-safe system for the ribosome under zinc-limiting conditions in Bacillus subtilis
-
Natori Y, Nanamiya H, Akanuma G, Kosono S, Kudo T, Ochi K, et al. A fail-safe system for the ribosome under zinc-limiting conditions in Bacillus subtilis. Mol Microbiol. 2007;63(1):294-307.
-
(2007)
Mol Microbiol.
, vol.63
, Issue.1
, pp. 294-307
-
-
Natori, Y.1
Nanamiya, H.2
Akanuma, G.3
Kosono, S.4
Kudo, T.5
Ochi, K.6
-
19
-
-
0036041795
-
A peroxide-induced zinc uptake system plays an important role in protection against oxidative stress in Bacillus subtilis
-
Gaballa A, Helmann JD. A peroxide-induced zinc uptake system plays an important role in protection against oxidative stress in Bacillus subtilis. Mol Microbiol. 2002;45(4):997-1005.
-
(2002)
Mol Microbiol.
, vol.45
, Issue.4
, pp. 997-1005
-
-
Gaballa, A.1
Helmann, J.D.2
-
20
-
-
82955224978
-
ZnuABC and ZosA zinc transporters are differently involved in competence development in Bacillus subtilis
-
Ogura M. ZnuABC and ZosA zinc transporters are differently involved in competence development in Bacillus subtilis. J Biochem. 2011;150(6):615-25.
-
(2011)
J Biochem.
, vol.150
, Issue.6
, pp. 615-625
-
-
Ogura, M.1
-
21
-
-
15744374882
-
Metal ion homeostasis in Bacillus subtilis
-
Moore CM, Helmann JD. Metal ion homeostasis in Bacillus subtilis. Curr Opin Microbiol. 2005;8(2):188-95.
-
(2005)
Curr Opin Microbiol.
, vol.8
, Issue.2
, pp. 188-195
-
-
Moore, C.M.1
Helmann, J.D.2
-
22
-
-
84891749330
-
SubtiWiki-a database for the model organism Bacillus subtilis that links pathway, interaction and expression information
-
Michna RH, Commichau FM, Todter D, Zschiedrich CP, Stulke J. SubtiWiki-a database for the model organism Bacillus subtilis that links pathway, interaction and expression information. Nucleic Acids Res. 2013;42:D692-8.
-
(2013)
Nucleic Acids Res.
, vol.42
, pp. D692-D698
-
-
Michna, R.H.1
Commichau, F.M.2
Todter, D.3
Zschiedrich, C.P.4
Stulke, J.5
-
23
-
-
84857672615
-
Global network reorganization during dynamic adaptations of Bacillus subtilis metabolism
-
Buescher JM, Liebermeister W, Jules M, Uhr M, Muntel J, Botella E, et al. Global network reorganization during dynamic adaptations of Bacillus subtilis metabolism. Science. 2012;335:1099-103.
-
(2012)
Science.
, vol.335
, pp. 1099-1103
-
-
Buescher, J.M.1
Liebermeister, W.2
Jules, M.3
Uhr, M.4
Muntel, J.5
Botella, E.6
-
24
-
-
84868101287
-
Genome-wide identification of genes directly regulated by the pleiotropic transcription factor Spx in Bacillus subtilis
-
Rochat T, Nicolas P, Delumeau O, Rabatinova A, Korelusova J, Leduc A, et al. Genome-wide identification of genes directly regulated by the pleiotropic transcription factor Spx in Bacillus subtilis . Nucleic Acids Res. 2012;40(19):9571-83.
-
(2012)
Nucleic Acids Res.
, vol.40
, Issue.19
, pp. 9571-9583
-
-
Rochat, T.1
Nicolas, P.2
Delumeau, O.3
Rabatinova, A.4
Korelusova, J.5
Leduc, A.6
-
25
-
-
0043193943
-
Comparative genomics of bacterial zinc regulons: Enhanced ion transport, pathogenesis, and rearrangement of ribosomal proteins
-
Panina EM, Mironov AA, Gelfand MS. Comparative genomics of bacterial zinc regulons: enhanced ion transport, pathogenesis, and rearrangement of ribosomal proteins. Proc Natl Acad Sci. 2003;100(17):9912-7.
-
(2003)
Proc Natl Acad Sci.
, vol.100
, Issue.17
, pp. 9912-9917
-
-
Panina, E.M.1
Mironov, A.A.2
Gelfand, M.S.3
-
26
-
-
84857683425
-
Condition-dependent transcriptome reveals high-level regulatory architecture in Bacillus subtilis
-
Nicolas P, Mader U, Dervyn E, Rochat T, Leduc A, Pigeonneau N, et al. Condition-dependent transcriptome reveals high-level regulatory architecture in Bacillus subtilis. Science. 2012;335:1103-6.
-
(2012)
Science.
, vol.335
, pp. 1103-1106
-
-
Nicolas, P.1
Mader, U.2
Dervyn, E.3
Rochat, T.4
Leduc, A.5
Pigeonneau, N.6
-
27
-
-
0036035079
-
Global analysis of the Bacillus subtilis Fur regulon and the iron starvation stimulon
-
Baichoo N, Wang T, Ye R, Helmann JD. Global analysis of the Bacillus subtilis Fur regulon and the iron starvation stimulon. Mol Microbiol. 2002;45(6):1613-29.
-
(2002)
Mol Microbiol.
, vol.45
, Issue.6
, pp. 1613-1629
-
-
Baichoo, N.1
Wang, T.2
Ye, R.3
Helmann, J.D.4
-
28
-
-
84896735652
-
The FUR (ferric uptake regulator) superfamily: Diversity and versatility of key transcriptional regulators
-
Fillat MF. The FUR (ferric uptake regulator) superfamily: diversity and versatility of key transcriptional regulators. Arch Biochem Biophys. 2014;546:41-52.
-
(2014)
Arch Biochem Biophys.
, vol.546
, pp. 41-52
-
-
Fillat, M.F.1
-
29
-
-
0142214661
-
Recognition of DNA by three ferric uptake regulator (Fur) homologs in Bacillus subtilis
-
Fuangthong M, Helmann JD. Recognition of DNA by three ferric uptake regulator (Fur) homologs in Bacillus subtilis. J Bacteriol. 2003;185(21):6348-57.
-
(2003)
J Bacteriol.
, vol.185
, Issue.21
, pp. 6348-6357
-
-
Fuangthong, M.1
Helmann, J.D.2
-
31
-
-
79953300078
-
FIMO: Scanning for occurrences of a given motif
-
Grant CE, Bailey TL, Noble WS. FIMO: scanning for occurrences of a given motif. Bioinformatics. 2011;27(7):1017-8.
-
(2011)
Bioinformatics.
, vol.27
, Issue.7
, pp. 1017-1018
-
-
Grant, C.E.1
Bailey, T.L.2
Noble, W.S.3
-
32
-
-
25144520372
-
Regulation of sigL expression by the catabolite control protein CcpA involves a roadblock mechanism in Bacillus subtilis: Potential connection between carbon and nitrogen metabolism
-
Choi SK, Saier Jr MH. Regulation of sigL expression by the catabolite control protein CcpA involves a roadblock mechanism in Bacillus subtilis: potential connection between carbon and nitrogen metabolism. J Bacteriol. 2005;187(19):6856-61.
-
(2005)
J Bacteriol.
, vol.187
, Issue.19
, pp. 6856-6861
-
-
Choi, S.K.1
Saier, M.H.2
-
33
-
-
80051668431
-
Roadblock repression of transcription by Bacillus subtilis CodY
-
Belitsky BR, Sonenshein AL. Roadblock repression of transcription by Bacillus subtilis CodY. J Mol Biol. 2011;411:729-43.
-
(2011)
J Mol Biol.
, vol.411
, pp. 729-743
-
-
Belitsky, B.R.1
Sonenshein, A.L.2
-
34
-
-
13144257719
-
Redox-sensitive transcriptional control by a thiol/disulphide switch in the global regulator, Spx
-
Nakano S, Erwin KN, Ralle M, Zuber P. Redox-sensitive transcriptional control by a thiol/disulphide switch in the global regulator, Spx. Mol Microbiol. 2005;55(2):498-510.
-
(2005)
Mol Microbiol.
, vol.55
, Issue.2
, pp. 498-510
-
-
Nakano, S.1
Erwin, K.N.2
Ralle, M.3
Zuber, P.4
-
35
-
-
35648937009
-
Requirement of the zinc-binding domain of ClpX for Spx proteolysis in Bacillus subtilis and effects of disulfide stress on ClpXP activity
-
Zhang Y, Zuber P. Requirement of the zinc-binding domain of ClpX for Spx proteolysis in Bacillus subtilis and effects of disulfide stress on ClpXP activity. J Bacteriol. 2007;189(21):7669-80.
-
(2007)
J Bacteriol.
, vol.189
, Issue.21
, pp. 7669-7680
-
-
Zhang, Y.1
Zuber, P.2
-
36
-
-
34249811787
-
Zinc-responsive regulation of alternative ribosomal protein genes in Streptomyces coelicolor involves zur and sigmaR
-
Owen GA, Pascoe B, Kallifidas D, Paget MS. Zinc-responsive regulation of alternative ribosomal protein genes in Streptomyces coelicolor involves zur and sigmaR. J Bacteriol. 2007;189(11):4078-86.
-
(2007)
J Bacteriol.
, vol.189
, Issue.11
, pp. 4078-4086
-
-
Owen, G.A.1
Pascoe, B.2
Kallifidas, D.3
Paget, M.S.4
-
38
-
-
0029006115
-
Salt stress is an environmental signal affecting degradative enzyme synthesis in Bacillus subtilis
-
Kunst F, Rapoport G. Salt stress is an environmental signal affecting degradative enzyme synthesis in Bacillus subtilis. J Bacteriol. 1995;177(9):2403-7.
-
(1995)
J Bacteriol.
, vol.177
, Issue.9
, pp. 2403-2407
-
-
Kunst, F.1
Rapoport, G.2
-
39
-
-
13444283630
-
Interaction network containing conserved and essential protein complexes in Escherichia coli
-
Butland G, Peregrin-Alvarez JM, Li J, Yang W, Yang X, Canadien V, et al. Interaction network containing conserved and essential protein complexes in Escherichia coli . Nature. 2005;433(7025):531-7.
-
(2005)
Nature.
, vol.433
, Issue.7025
, pp. 531-537
-
-
Butland, G.1
Peregrin-Alvarez, J.M.2
Li, J.3
Yang, W.4
Yang, X.5
Canadien, V.6
-
40
-
-
4444281106
-
Sequential Peptide Affinity (SPA) system for the identification of mammalian and bacterial protein complexes
-
Zeghouf M, Li J, Butland G, Borkowska A, Canadien V, Richards D, et al. Sequential Peptide Affinity (SPA) system for the identification of mammalian and bacterial protein complexes. J Proteome Res. 2004;3(3):463-8.
-
(2004)
J Proteome Res.
, vol.3
, Issue.3
, pp. 463-468
-
-
Zeghouf, M.1
Li, J.2
Butland, G.3
Borkowska, A.4
Canadien, V.5
Richards, D.6
-
41
-
-
34948867321
-
Anticipating chromosomal replication fork arrest: SSB targets repair DNA helicases to active forks
-
Lecointe F, Serena C, Velten M, Costes A, McGovern S, Meile JC, et al. Anticipating chromosomal replication fork arrest: SSB targets repair DNA helicases to active forks. Embo J. 2007;26(19):4239-51.
-
(2007)
Embo J.
, vol.26
, Issue.19
, pp. 4239-4251
-
-
Lecointe, F.1
Serena, C.2
Velten, M.3
Costes, A.4
McGovern, S.5
Meile, J.C.6
-
42
-
-
0029871347
-
PCR-synthesis of marker cassettes with long flanking homology regions for gene disruptions in S. cerevisiae
-
Wach A. PCR-synthesis of marker cassettes with long flanking homology regions for gene disruptions in S. cerevisiae. Yeast. 1996;12(3):259-65.
-
(1996)
Yeast.
, vol.12
, Issue.3
, pp. 259-265
-
-
Wach, A.1
-
43
-
-
0030742667
-
Induction of the Bacillus subtilis ptsGHI operon by glucose is controlled by a novel antiterminator, GlcT
-
Stülke J, Martin-Verstraete I, Zagorec M, Rose M, Klier A, Rapoport G. Induction of the Bacillus subtilis ptsGHI operon by glucose is controlled by a novel antiterminator, GlcT. Mol Microbiol. 1997;25(1):65-78.
-
(1997)
Mol Microbiol.
, vol.25
, Issue.1
, pp. 65-78
-
-
Stülke, J.1
Martin-Verstraete, I.2
Zagorec, M.3
Rose, M.4
Klier, A.5
Rapoport, G.6
-
44
-
-
0004228003
-
-
Cold Spring Harbor: Cold Spring Harbor Laboratory
-
Miller JH. Assay of B-galactosidase. Cold Spring Harbor: Cold Spring Harbor Laboratory; 1972.
-
(1972)
Assay of B-Galactosidase
-
-
Miller, J.H.1
-
45
-
-
67349270900
-
Enzymatic assembly of DNA molecules up to several hundred kilobases
-
Gibson DG, Young L, Chuang RY, Venter JC, Hutchison 3rd CA, Smith HO. Enzymatic assembly of DNA molecules up to several hundred kilobases. Nat Methods. 2009;6(5):343-5.
-
(2009)
Nat Methods.
, vol.6
, Issue.5
, pp. 343-345
-
-
Gibson, D.G.1
Young, L.2
Chuang, R.Y.3
Venter, J.C.4
Hutchison, C.A.5
Smith, H.O.6
-
46
-
-
79955590413
-
Fluctuations in spo0A transcription control rare developmental transitions in Bacillus subtilis
-
Mirouze N, Prepiak P, Dubnau D. Fluctuations in spo0A transcription control rare developmental transitions in Bacillus subtilis. PLoS Genet. 2011;7(4):e1002048.
-
(2011)
PLoS Genet.
, vol.7
, Issue.4
, pp. e1002048
-
-
Mirouze, N.1
Prepiak, P.2
Dubnau, D.3
-
47
-
-
70350159135
-
The transcriptionally active regions in the genome of Bacillus subtilis
-
Rasmussen S, Nielsen HB, Jarmer H. The transcriptionally active regions in the genome of Bacillus subtilis. Mol Microbiol. 2009;73:1043-57.
-
(2009)
Mol Microbiol.
, vol.73
, pp. 1043-1057
-
-
Rasmussen, S.1
Nielsen, H.B.2
Jarmer, H.3
-
48
-
-
33751534830
-
The transition between transcriptional initiation and elongation in E. coli is highly variable and often rate limiting
-
Reppas NB, Wade JT, Church GM, Struhl K. The transition between transcriptional initiation and elongation in E. coli is highly variable and often rate limiting. Mol Cell. 2006;24:747-57.
-
(2006)
Mol Cell.
, vol.24
, pp. 747-757
-
-
Reppas, N.B.1
Wade, J.T.2
Church, G.M.3
Struhl, K.4
|