메뉴 건너뛰기




Volumn 1275, Issue , 2015, Pages 73-89

Low-concentration initiator primers improve the amplification of gene targets with high sequence variability

Author keywords

Asymmetric PCR; Consensus primers; CTX M beta lactamase; Degenerate primers; Hybridization probes; Initiator primers; LATE PCR; Molecular diagnostics; Nucleic acid sequence Diversity

Indexed keywords

ANTIBIOTIC AGENT; BETA LACTAMASE CTX M; CEFOTAXIME; PENICILLIN DERIVATIVE; PRIMER DNA;

EID: 84923652003     PISSN: 10643745     EISSN: None     Source Type: Book Series    
DOI: 10.1007/978-1-4939-2365-6_5     Document Type: Article
Times cited : (1)

References (25)
  • 1
    • 0028915024 scopus 로고
    • The use of general primers GP5 and GP6 elongated at their 3′ ends with adjacent highly conserved sequences improves human papillomavirus detection by PCR
    • de Roda Husman AM, Walboomers JM, van den Brule AJ, Meijer CJ, Snijders PJ (1995) The use of general primers GP5 and GP6 elongated at their 3′ ends with adjacent highly conserved sequences improves human papillomavirus detection by PCR. J Gen Virol 76:1057–1062
    • (1995) J Gen Virol , vol.76 , pp. 1057-1062
    • De Roda Husman, A.M.1    Walboomers, J.M.2    Van Den Brule, A.J.3    Meijer, C.J.4    Snijders, P.J.5
  • 3
    • 0023770878 scopus 로고
    • A sensitive method for the identification of uncharacterized viruses related to known virus groups: Hepadnavirus model system
    • Mack DH, Sninsky JJ (1988) A sensitive method for the identification of uncharacterized viruses related to known virus groups: hepadnavirus model system. Proc Natl Acad Sci U S A 85:6977–6981
    • (1988) Proc Natl Acad Sci U S A , vol.85 , pp. 6977-6981
    • Mack, D.H.1    Sninsky, J.J.2
  • 4
    • 36048959789 scopus 로고    scopus 로고
    • An iterative method for selecting degenerate multiplex PCR primers
    • Souvenir R, Buhler J, Stormo G, Zhang W (2007) An iterative method for selecting degenerate multiplex PCR primers. Methods Mol Biol 402:245–268
    • (2007) Methods Mol Biol , vol.402 , pp. 245-268
    • Souvenir, R.1    Buhler, J.2    Stormo, G.3    Zhang, W.4
  • 5
    • 0042674405 scopus 로고    scopus 로고
    • Human papillomavirus testing methods
    • Hubbard RA (2003) Human papillomavirus testing methods. Arch Pathol Lab Med 127:940–945
    • (2003) Arch Pathol Lab Med , vol.127 , pp. 940-945
    • Hubbard, R.A.1
  • 7
  • 9
    • 1242296843 scopus 로고    scopus 로고
    • Linear-after-the-exponential (LATE)- PCR: An advanced method of asymmetric PCR and its uses in quantitative real-time analysis
    • Sanchez JA, Pierce KE, Rice JE, Wangh LJ (2004) Linear-after-the-exponential (LATE)- PCR: an advanced method of asymmetric PCR and its uses in quantitative real-time analysis. Proc Natl Acad Sci U S A 101:1933–1938
    • (2004) Proc Natl Acad Sci U S A , vol.101 , pp. 1933-1938
    • Sanchez, J.A.1    Pierce, K.E.2    Rice, J.E.3    Wangh, L.J.4
  • 10
    • 20844433243 scopus 로고    scopus 로고
    • Linear-after-the-exponential (LATE)- PCR: Optimizing primer design for high yields of specific single-stranded DNA and improved real-time detection
    • Pierce KE, Sanchez JA, Rice JE, Wangh LJ (2005) Linear-after-the-exponential (LATE)- PCR: optimizing primer design for high yields of specific single-stranded DNA and improved real-time detection. Proc Natl Acad Sci U S A 102:8609–8614
    • (2005) Proc Natl Acad Sci U S A , vol.102 , pp. 8609-8614
    • Pierce, K.E.1    Sanchez, J.A.2    Rice, J.E.3    Wangh, L.J.4
  • 11
    • 38449116138 scopus 로고    scopus 로고
    • Monoplex/ multiplex linear-after-the-exponential-PCR assays combined with PrimeSafe and Dilute- 'N'-Go sequencing
    • Rice JE, Sanchez JA, Pierce KE, Reis AH Jr, Osborne A, Wangh LJ (2007) Monoplex/ multiplex linear-after-the-exponential-PCR assays combined with PrimeSafe and Dilute- 'N'-Go sequencing. Nat Protoc 2:2429–2438
    • (2007) Nat Protoc , vol.2 , pp. 2429-2438
    • Rice, J.E.1    Sanchez, J.A.2    Pierce, K.E.3    Reis, A.H.4    Osborne, A.5    Wangh, L.J.6
  • 13
    • 84867830461 scopus 로고    scopus 로고
    • Rapid detection of sequence variation in Clostridium difficile genes using LATE-PCR with multiple mismatch- tolerant hybridization probes
    • Pierce KE, Khan H, Mistry R, Goldenberg SD, French GL, Wangh LJ (2012) Rapid detection of sequence variation in Clostridium difficile genes using LATE-PCR with multiple mismatch- tolerant hybridization probes. J Microbiol Methods 91:269–275
    • (2012) J Microbiol Methods , vol.91 , pp. 269-275
    • Pierce, K.E.1    Khan, H.2    Mistry, R.3    Goldenberg, S.D.4    French, G.L.5    Wangh, L.J.6
  • 14
    • 84876503276 scopus 로고    scopus 로고
    • Rapid detection of TEM-type extended-spectrum β-lactamase (ESBL) mutations using lightson/ lights-off probes with single-stranded DNA amplification
    • Pierce KE, Peter H, Bachmann TT, Volpe C, Mistry R, Rice JE, Wangh LJ (2013) Rapid detection of TEM-type extended-spectrum β-lactamase (ESBL) mutations using lightson/ lights-off probes with single-stranded DNA amplification. J Mol Diagn 15:291–298
    • (2013) J Mol Diagn , vol.15 , pp. 291-298
    • Pierce, K.E.1    Peter, H.2    Bachmann, T.T.3    Volpe, C.4    Mistry, R.5    Rice, J.E.6    Wangh, L.J.7
  • 15
    • 0347362476 scopus 로고    scopus 로고
    • Growing group of extendedspectrum β-lactamases: The CTX-M enzymes
    • Bonnet R (2004) Growing group of extendedspectrum β-lactamases: the CTX-M enzymes. Antimicrob Agents Chemother 48:1–14
    • (2004) Antimicrob Agents Chemother , vol.48 , pp. 1-14
    • Bonnet, R.1
  • 16
    • 0030875847 scopus 로고    scopus 로고
    • Thermodynamics and NMR of internal G·T mismatches in DNA
    • Allawi HT, SantaLucia J (1997) Thermodynamics and NMR of internal G·T mismatches in DNA. Biochemistry 36:10581–10594
    • (1997) Biochemistry , vol.36 , pp. 10581-10594
    • Allawi, H.T.1    Santalucia, J.2
  • 17
    • 0032539693 scopus 로고    scopus 로고
    • A unified view of polymer, dumbbell, and oligonucleotide DNA nearest- neighbor thermodynamics
    • SantaLucia J (1998) A unified view of polymer, dumbbell, and oligonucleotide DNA nearest- neighbor thermodynamics. Proc Natl Acad Sci U S A 95:1460–1465
    • (1998) Proc Natl Acad Sci U S A , vol.95 , pp. 1460-1465
    • Santalucia, J.1
  • 19
    • 77953562685 scopus 로고    scopus 로고
    • Design and optimization of a novel reverse transcription linear-after-the- exponential PCR for the detection of foot-and- mouth disease virus
    • Pierce KE, Mistry R, Reid SM, Bharya S, Dukes JP, Hartshorn C, King DP, Wangh LJ (2010) Design and optimization of a novel reverse transcription linear-after-the- exponential PCR for the detection of foot-and- mouth disease virus. J Appl Microbiol 109:180–189
    • (2010) J Appl Microbiol , vol.109 , pp. 180-189
    • Pierce, K.E.1    Mistry, R.2    Reid, S.M.3    Bharya, S.4    Dukes, J.P.5    Hartshorn, C.6    King, D.P.7    Wangh, L.J.8
  • 21
    • 77957306871 scopus 로고    scopus 로고
    • Polymerization behavior of Klenow fragment and Taq DNA polymerase in short primer extension reactions
    • Zhao G, Guan Y (2010) Polymerization behavior of Klenow fragment and Taq DNA polymerase in short primer extension reactions. Acta Biochim Biophys Sin 42:722–728
    • (2010) Acta Biochim Biophys Sin , vol.42 , pp. 722-728
    • Zhao, G.1    Guan, Y.2
  • 22
    • 84883700420 scopus 로고    scopus 로고
    • Rapid detection and identification of Hepatitis C Virus sequences using a molecular assay with mismatch- tolerant hybridization probes: A general method for analysis of sequence variation
    • Pierce KE, Wangh LJ (2013) Rapid detection and identification of Hepatitis C Virus sequences using a molecular assay with mismatch- tolerant hybridization probes: a general method for analysis of sequence variation. Biotechniques 55(3):125–132
    • (2013) Biotechniques , vol.55 , Issue.3 , pp. 125-132
    • Pierce, K.E.1    Wangh, L.J.2
  • 23
    • 0002659517 scopus 로고
    • Methods for obtaining thermodynamic data on oligonucleotide transitions
    • In: Hinz H, Springer, New York
    • Breslauer KJ (1986) Methods for obtaining thermodynamic data on oligonucleotide transitions. In: Hinz H (ed) Thermodynamic data for biochemistry and biotechnology. Springer, New York, pp 402–427
    • (1986) Thermodynamic Data for Biochemistry and Biotechnology , pp. 402-427
    • Breslauer, K.J.1
  • 25
    • 0036835759 scopus 로고    scopus 로고
    • Efficiencies of fluorescence resonance energy transfer and contact-mediated quenching in oligonucleotide probes
    • Marras SA, Kramer FR, Tyagi S (2002) Efficiencies of fluorescence resonance energy transfer and contact-mediated quenching in oligonucleotide probes. Nucleic Acids Res 30:e122
    • (2002) Nucleic Acids Res , vol.30
    • Marras, S.A.1    Kramer, F.R.2    Tyagi, S.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.